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PDB: 88608 results

4TZ0
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BU of 4tz0 by Molmil
DEAD-box helicase Mss116 bound to ssRNA and GDP-BeF
Descriptor: ATP-dependent RNA helicase MSS116, mitochondrial, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Mallam, A.L, Sidote, D.J, Lambowitz, A.M.
Deposit date:2014-07-09
Release date:2014-12-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase.
Elife, 3, 2014
4TZ9
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BU of 4tz9 by Molmil
Structure of Metallo-beta-lactamase
Descriptor: CADMIUM ION, COBALT (II) ION, Class B metallo-beta-lactamase, ...
Authors:Ferguson, J.A, Brem, J, Makena, A, McDonough, A.M, Schofield, C.J.
Deposit date:2014-07-09
Release date:2015-07-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1269 Å)
Cite:Structure of Metallo-beta-lactamase
To Be Published
7P3R
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BU of 7p3r by Molmil
Helical structure of the toxin MakA from Vibrio cholera
Descriptor: MakA tetramer
Authors:Berg, A, Nadeem, A, Uhlin, B.E, Wai, S.N, Barandun, J.
Deposit date:2021-07-08
Release date:2022-02-23
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Protein-lipid interaction at low pH induces oligomerization of the MakA cytotoxin from Vibrio cholerae .
Elife, 11, 2022
4U1P
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BU of 4u1p by Molmil
Human Fyn-SH2 domain in complex with a synthetic high-affinity phospho-peptide
Descriptor: Middle T antigen, POLYETHYLENE GLYCOL (N=34), SODIUM ION, ...
Authors:Garcia-Pino, A, Huculeci, R, Lenaerts, T, van Nuland, N.A.J.
Deposit date:2014-07-16
Release date:2015-07-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Human Fyn-SH2 domain in complex with a synthetic high-affinity phospho-peptide
To Be Published
4TUF
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BU of 4tuf by Molmil
Catalytic domain of the major endoglucanase from Xanthomonas campestris pv. campestris
Descriptor: DIHYDROGENPHOSPHATE ION, Major extracellular endoglucanase
Authors:Puhl, A.C, Rosseto, F.R, Polikarpov, I.
Deposit date:2014-06-24
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Substrate cleavage pattern, biophysical characterization and crystallographic structure of the major endoglucanase from Xanthomonas campestris pv. campestris
To Be Published
4TVG
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BU of 4tvg by Molmil
HIV Protease (PR) dimer in closed form with pepstatin in active site and fragment AK-2097 in the outside/top of flap
Descriptor: 3-(morpholin-4-ylmethyl)-1H-indole-6-carboxylic acid, GLYCEROL, HIV Protease, ...
Authors:Tiefenbrunn, T, Kislukhin, A, Finn, M.G, Stout, C.D.
Deposit date:2014-06-26
Release date:2014-09-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Distinguishing Binders from False Positives by Free Energy Calculations: Fragment Screening Against the Flap Site of HIV Protease.
J.Phys.Chem.B, 119, 2015
4TWW
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BU of 4tww by Molmil
Structure of SARS-3CL protease complex with a Bromobenzoyl (S,R)-N-decalin type inhibitor
Descriptor: (2S)-2-({[(3S,4aR,8aS)-2-(4-bromobenzoyl)decahydroisoquinolin-3-yl]methyl}amino)-3-(1H-imidazol-5-yl)propanal, 3C-like proteinase
Authors:Akaji, K, Teruya, K, Shimamoto, Y, Sanjho, A, Yamashita, E, Nakagawa, A.
Deposit date:2014-07-02
Release date:2015-02-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Fused-ring structure of decahydroisoquinolin as a novel scaffold for SARS 3CL protease inhibitors
Bioorg.Med.Chem., 23, 2015
4U0A
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BU of 4u0a by Molmil
Hexameric HIV-1 CA in complex with CPSF6 peptide, P6 crystal form
Descriptor: CHLORIDE ION, Capsid protein p24, Cleavage and polyadenylation specificity factor subunit 6
Authors:Price, A.J, Jacques, D.A, James, L.C.
Deposit date:2014-07-11
Release date:2014-11-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Host Cofactors and Pharmacologic Ligands Share an Essential Interface in HIV-1 Capsid That Is Lost upon Disassembly.
Plos Pathog., 10, 2014
4U0E
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BU of 4u0e by Molmil
Hexameric HIV-1 CA in complex with PF3450074
Descriptor: CHLORIDE ION, Capsid protein p24, N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE
Authors:Price, A.J, Jacques, D.A, James, L.C.
Deposit date:2014-07-11
Release date:2014-11-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.043 Å)
Cite:Host Cofactors and Pharmacologic Ligands Share an Essential Interface in HIV-1 Capsid That Is Lost upon Disassembly.
Plos Pathog., 10, 2014
4TYW
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BU of 4tyw by Molmil
DEAD-box helicase Mss116 bound to ssRNA and ADP-BeF
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase MSS116, mitochondrial, ...
Authors:Mallam, A.L, Sidote, D.J, Lambowitz, A.M.
Deposit date:2014-07-09
Release date:2014-12-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.197 Å)
Cite:Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase.
Elife, 3, 2014
4U12
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BU of 4u12 by Molmil
Crystal structure of protein HP0242 from Helicobacter pylori at 1.94 A resolution: a knotted homodimer
Descriptor: Uncharacterized protein HP0242
Authors:Grabowski, M, Shabalin, I.G, Chruszcz, M, Skarina, T, Onopriyenko, O, Guthrie, J, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-07-14
Release date:2014-07-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of protein HP0242 from Helicobacter pylori at 1.94 A resolution: a knotted homodimer
to be published
4TZ6
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BU of 4tz6 by Molmil
DEAD-box helicase Mss116 bound to ssRNA and UDP-BeF
Descriptor: ATP-dependent RNA helicase MSS116, mitochondrial, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Mallam, A.L, Sidote, D.J, Lambowitz, A.M.
Deposit date:2014-07-09
Release date:2015-01-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.209 Å)
Cite:Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase.
Elife, 3, 2014
4U06
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BU of 4u06 by Molmil
Structure of Leptospira interrogans LRR protein LIC10831
Descriptor: CHLORIDE ION, LIC10831, ZINC ION
Authors:Shepard, W, Saul, F.A, Haouz, A, Picardeau, M.
Deposit date:2014-07-11
Release date:2015-06-03
Last modified:2015-06-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural characterization of a novel subfamily of leucine-rich repeat proteins from the human pathogen Leptospira interrogans.
Acta Crystallogr.,Sect.D, 71, 2015
4U08
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BU of 4u08 by Molmil
Structure of Leptospira interrogans LRR protein LIC11098
Descriptor: CALCIUM ION, LIC11098, SULFATE ION, ...
Authors:Shepard, W, Saul, F.A, Haouz, A, Picardeau, M.
Deposit date:2014-07-11
Release date:2015-06-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization of a novel subfamily of leucine-rich repeat proteins from the human pathogen Leptospira interrogans.
Acta Crystallogr.,Sect.D, 71, 2015
4U0B
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BU of 4u0b by Molmil
Hexamer HIV-1 CA in complex with CPSF6 peptide, P212121 crystal form
Descriptor: Capsid protein p24, Cleavage and polyadenylation specificity factor subunit 6
Authors:Price, A.J, Jacques, D.A, James, L.C.
Deposit date:2014-07-11
Release date:2014-11-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Host Cofactors and Pharmacologic Ligands Share an Essential Interface in HIV-1 Capsid That Is Lost upon Disassembly.
Plos Pathog., 10, 2014
4TZA
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BU of 4tza by Molmil
TGP, an extremely thermostable green fluorescent protein created by structure-guided surface engineering
Descriptor: Fluorescent Protein
Authors:Close, D.W, Bradbury, A.R.M.
Deposit date:2014-07-09
Release date:2014-10-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Thermal green protein, an extremely stable, nonaggregating fluorescent protein created by structure-guided surface engineering.
Proteins, 83, 2015
4U09
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BU of 4u09 by Molmil
Structure of Leptospira interrogans LRR protein LIC12759
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Shepard, W, Saul, F.A, Haouz, A, Picardeau, M.
Deposit date:2014-07-11
Release date:2015-06-03
Last modified:2015-06-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization of a novel subfamily of leucine-rich repeat proteins from the human pathogen Leptospira interrogans.
Acta Crystallogr.,Sect.D, 71, 2015
4U0F
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BU of 4u0f by Molmil
Hexameric HIV-1 CA in Complex with BI-2
Descriptor: (4S)-4-(4-hydroxyphenyl)-3-phenyl-4,5-dihydropyrrolo[3,4-c]pyrazol-6(1H)-one, 1,2-ETHANEDIOL, Capsid protein p24
Authors:Price, A.J, Jacques, D.A, James, L.C.
Deposit date:2014-07-11
Release date:2014-11-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Host Cofactors and Pharmacologic Ligands Share an Essential Interface in HIV-1 Capsid That Is Lost upon Disassembly.
Plos Pathog., 10, 2014
4U27
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BU of 4u27 by Molmil
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D.
Deposit date:2014-07-16
Release date:2014-07-30
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Synergy of streptogramin antibiotics occurs independently of their effects on translation.
Antimicrob.Agents Chemother., 58, 2014
4U4W
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BU of 4u4w by Molmil
Structure of a nitrate/nitrite antiporter NarK in nitrate-bound occluded state
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, NITRATE ION, Nitrate/nitrite transporter NarK, ...
Authors:Fukuda, M, Takeda, H, Kato, H.E, Doki, S, Ito, K, Maturana, A.D, Ishitani, R, Nureki, O.
Deposit date:2014-07-24
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK
Nat Commun, 6, 2015
7OLW
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BU of 7olw by Molmil
Structure of the N-terminal domain of BC2L-C lectin (1-131) in complex with a synthetic beta-N-fucoside ligand
Descriptor: 5-(3-aminophenyl)furan-2-carboxamido-(beta-L-fucopyranose), Lectin
Authors:Bermeo, R, Varrot, A.
Deposit date:2021-05-20
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Targeting a Multidrug-Resistant Pathogen: First Generation Antagonists of Burkholderia cenocepacia 's BC2L-C Lectin.
Acs Chem.Biol., 17, 2022
7P8P
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BU of 7p8p by Molmil
Crystal structure of Fhit covalently bound to a nucleotide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bis(5'-adenosyl)-triphosphatase, SODIUM ION, ...
Authors:Herzog, D, Missun, M, Diederichs, K, Marx, A.
Deposit date:2021-07-23
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Chemical Proteomics of the Tumor Suppressor Fhit Covalently Bound to the Cofactor Ap 3 A Elucidates Its Inhibitory Action on Translation.
J.Am.Chem.Soc., 144, 2022
4TZB
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BU of 4tzb by Molmil
Structure of NDM-Metallo-beta-lactamase
Descriptor: CADMIUM ION, COBALT (II) ION, Metallo-beta-lactamase, ...
Authors:Ferguson, J.A, Makena, A, Brem, J, McDonough, M.A, Schofield, C.J.
Deposit date:2014-07-09
Release date:2015-07-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.029 Å)
Cite:Structure of Metallo-beta-lactamase
To Be Published
4TZG
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BU of 4tzg by Molmil
Crystal structure of eCGP123, an extremely thermostable green fluorescent protein
Descriptor: Fluorescent Protein
Authors:Close, D.W, Don Paul, C, Traore, D.A.K, Wilce, M.C.J, Prescott, M, Bradbury, A.R.M.
Deposit date:2014-07-10
Release date:2014-10-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Thermal green protein, an extremely stable, nonaggregating fluorescent protein created by structure-guided surface engineering.
Proteins, 83, 2015
4U0D
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BU of 4u0d by Molmil
Hexameric HIV-1 CA in complex with Nup153 peptide, P212121 crystal form
Descriptor: CHLORIDE ION, Gag polyprotein, Nuclear pore complex protein Nup153
Authors:Price, A.J, Jacques, D.A, James, L.C.
Deposit date:2014-07-11
Release date:2014-11-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Host Cofactors and Pharmacologic Ligands Share an Essential Interface in HIV-1 Capsid That Is Lost upon Disassembly.
Plos Pathog., 10, 2014

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