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PDB: 88608 results

3EBC
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BU of 3ebc by Molmil
Structure of N141A HincII with Cognate DNA
Descriptor: 5'-D(*DGP*DCP*DCP*DCP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3', 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DGP*DGP*DGP*DC)-3', MANGANESE (II) ION, ...
Authors:Little, E.J, Babic, A.C, Horton, N.C.
Deposit date:2008-08-27
Release date:2008-12-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Early Interrogation and Recognition of DNA Sequence by Indirect Readout
Structure, 16, 2008
6IUE
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BU of 6iue by Molmil
DNA helical wire containing Hg(II)
Descriptor: DNA (5'-D(*TP*TP*TP*GP*C)-3'), MERCURY (II) ION
Authors:Ono, A, Kanazawa, H, Ito, H, Goto, M, Nakamura, K, Saneyoshi, H, Kondo, J.
Deposit date:2018-11-28
Release date:2019-10-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:A Novel DNA Helical Wire Containing HgII-Mediated T:T and T:G Pairs.
Angew.Chem.Int.Ed.Engl., 58, 2019
4UWT
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BU of 4uwt by Molmil
Hypocrea jecorina Cel7A E212Q mutant in complex with p-nitrophenyl cellobioside
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CELLOBIOHYDROLASE CEL7A, COBALT (II) ION, ...
Authors:Nutt, A, Momeni, M.H, Johansson, G, Stahlberg, J.
Deposit date:2014-08-14
Release date:2015-08-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Enzyme kinetics by GH7 cellobiohydrolases on chromogenic substrates is dictated by non-productive binding: insights from crystal structures and MD simulation.
Febs J., 2022
2HGF
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BU of 2hgf by Molmil
HAIRPIN LOOP CONTAINING DOMAIN OF HEPATOCYTE GROWTH FACTOR, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: HEPATOCYTE GROWTH FACTOR
Authors:Zhou, H, Mazzulla, M.J, Kaufman, J.D, Stahl, S.J, Wingfield, P.T, Rubin, J.S, Bottaro, D.P, Byrd, R.A.
Deposit date:1997-12-18
Release date:1998-06-24
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The solution structure of the N-terminal domain of hepatocyte growth factor reveals a potential heparin-binding site.
Structure, 6, 1998
1T6H
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BU of 1t6h by Molmil
Crystal Structure T4 Lysozyme incorporating an unnatural amino acid p-iodo-L-phenylalanine at position 153
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, Lysozyme
Authors:Spraggon, G, Xie, J, Wang, L, Wu, N, Brock, A, Schultz, P.G.
Deposit date:2004-05-06
Release date:2004-10-26
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The site-specific incorporation of p-iodo-L-phenylalanine into proteins for structure determination.
Nat.Biotechnol., 22, 2004
4QPP
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BU of 4qpp by Molmil
The Crystal Structure of Human HMT1 hnRNP methyltransferase-like protein 6 in complex with compound DS-421 (2-{4-[3-CHLORO-2-(2-METHOXYPHENYL)-1H-INDOL-5-YL]PIPERIDIN-1-YL}-N-METHYLETHANAMINE
Descriptor: 2-{4-[3-chloro-2-(2-methoxyphenyl)-1H-indol-5-yl]piperidin-1-yl}-N-methylethanamine, POLY-UNK, Protein arginine N-methyltransferase 6, ...
Authors:Dong, A, Zeng, H, Smil, D, Walker, J.R, He, H, Eram, M, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Vedadi, M, Brown, P.J, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2014-06-24
Release date:2014-08-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:The Crystal Structure of Human HMT1 hnRNP methyltransferase-like protein 6 in complex with compound DS-421
To be Published
8A0E
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BU of 8a0e by Molmil
CryoEM structure of DHS-eIF5A1 complex
Descriptor: Deoxyhypusine synthase, Eukaryotic translation initiation factor 5A, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Wator, E, Wilk, P, Biela, A.P, Rawski, M, Grudnik, P.
Deposit date:2022-05-27
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of human eIF5A-DHS complex reveals the molecular basis of hypusination-associated neurodegenerative disorders.
Nat Commun, 14, 2023
1T8H
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BU of 1t8h by Molmil
1.8 A CRYSTAL STRUCTURE OF AN UNCHARACTERIZED B. STEAROTHERMOPHILUS PROTEIN
Descriptor: BETA-MERCAPTOETHANOL, YlmD protein sequence homologue, ZINC ION
Authors:Minasov, G, Shuvalova, L, Mondragon, A, Taneja, B, Moy, S.F, Collart, F.R, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-05-12
Release date:2004-05-18
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1.8 A CRYSTAL STRUCTURE OF AN UNCHARACTERIZED B. STEAROTHERMOPHILUS PROTEIN
To be Published
5CR3
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BU of 5cr3 by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS V104E/L125E at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Skerritt, L.A, Bell-Upp, P.C, Schlessman, J.L, Garcia-Moreno E, B.
Deposit date:2015-07-22
Release date:2015-08-05
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Staphylococcal nuclease variant Delta+PHS V104E/L125E at cryogenic temperature
To be Published
6IEY
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BU of 6iey by Molmil
Crystal structure of Chloramphenicol-Metabolizaing Enzyme EstDL136-Chloramphenicol complex
Descriptor: CHLORAMPHENICOL, Esterase
Authors:Kim, S.H, Kang, P.A, Han, K.T, Lee, S.W, Rhee, S.K.
Deposit date:2018-09-18
Release date:2019-02-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.097 Å)
Cite:Crystal structure of chloramphenicol-metabolizing enzyme EstDL136 from a metagenome.
PLoS ONE, 14, 2019
1TFZ
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BU of 1tfz by Molmil
Structural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and mammalian 4-hydroxyphenylpyruvate dioxygenases
Descriptor: (1-TERT-BUTYL-5-HYDROXY-1H-PYRAZOL-4-YL)[6-(METHYLSULFONYL)-4'-METHOXY-2-METHYL-1,1'-BIPHENYL-3-YL]METHANONE, 4-hydroxyphenylpyruvate dioxygenase, FE (III) ION
Authors:Yang, C, Pflugrath, J.W, Camper, D.L, Foster, M.L, Pernich, D.J, Walsh, T.A.
Deposit date:2004-05-27
Release date:2004-08-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and Mammalian 4-hydroxyphenylpyruvate dioxygenases
Biochemistry, 43, 2004
3EPV
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BU of 3epv by Molmil
X-ray Structure of the Metal-sensor CnrX in both the Apo- and Copper-bound Forms
Descriptor: COPPER (II) ION, Nickel and cobalt resistance protein cnrR
Authors:Pompidor, G, Maillard, A.P, Girard, E, Gambarelli, S, Kahn, R, Coves, J.
Deposit date:2008-09-30
Release date:2008-11-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.742 Å)
Cite:X-ray structure of the metal-sensor CnrX in both the apo- and copper-bound forms.
Febs Lett., 2008
6PA4
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BU of 6pa4 by Molmil
E. coli L-asparaginase II double mutant (T89V,K162T) in complex with L-Asp at pH 7.0
Descriptor: ASPARTIC ACID, GLYCEROL, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-06-11
Release date:2019-09-04
Last modified:2020-08-19
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase.
Protein Sci., 28, 2019
8I4F
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BU of 8i4f by Molmil
Omicron spike variant XBB with n3130v-Fc
Descriptor: Spike glycoprotein, n3130v-Fc
Authors:Hao, A.H, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2023-01-19
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Defining a highly conserved cryptic epitope for antibody recognition of SARS-CoV-2 variants.
Signal Transduct Target Ther, 8, 2023
8I4G
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BU of 8i4g by Molmil
Omicron spike variant BQ.1.1 with n3130v-Fc
Descriptor: Spike glycoprotein, n3130v-Fc
Authors:Hao, A.H, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2023-01-19
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.68 Å)
Cite:Defining a highly conserved cryptic epitope for antibody recognition of SARS-CoV-2 variants.
Signal Transduct Target Ther, 8, 2023
6IDR
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BU of 6idr by Molmil
Crystal structure of Vibrio cholerae MATE transporter VcmN in the bent form
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, MATE family efflux transporter
Authors:Kusakizako, T, Claxton, D.P, Tanaka, Y, Maturana, A.D, Kuroda, T, Ishitani, R, Mchaourab, H.S, Nureki, O.
Deposit date:2018-09-11
Release date:2019-01-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter.
Structure, 27, 2019
5D55
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BU of 5d55 by Molmil
Crystal structure of the E. coli Hda pilus minor tip subunit, HdaB
Descriptor: CITRATE ANION, HdaB,HdaA (Adhesin), HUS-associated diffuse adherence, ...
Authors:Lee, W.-C, Garnett, J.A, Matthews, S.J.
Deposit date:2015-08-10
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and analysis of HdaB: The enteroaggregative Escherichia coli AAF/IV pilus tip protein.
Protein Sci., 25, 2016
8I4E
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BU of 8i4e by Molmil
Omicron spike variant XBB with Bn03
Descriptor: Bn03, Spike glycoprotein
Authors:Hao, A.H, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2023-01-19
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.98 Å)
Cite:Defining a highly conserved cryptic epitope for antibody recognition of SARS-CoV-2 variants.
Signal Transduct Target Ther, 8, 2023
2IH4
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BU of 2ih4 by Molmil
Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing pyrrolo-dC at the target base partner position
Descriptor: 5'-D(*GP*AP*CP*AP*(4PC)P*CP*GP*(6MA)P*AP*C)-3', 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE, ...
Authors:Lenz, T, Scheidig, A.J, Weinhold, E.
Deposit date:2006-09-25
Release date:2007-11-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Influence of the target base partner on the methylation rate of the adenine-specific DNA methyltransferase M.TaqI
To be Published
3EUW
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BU of 3euw by Molmil
Crystal Structure of a Myo-inositol dehydrogenase from Corynebacterium glutamicum ATCC 13032
Descriptor: Myo-inositol dehydrogenase, SODIUM ION
Authors:Kumaran, D, Mahmood, A, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-10-11
Release date:2008-10-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of a Myo-inositol dehydrogenase from Corynebacterium glutamicum ATCC 13032
To be Published
3EBQ
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BU of 3ebq by Molmil
Crystal structure of human PPPDE1
Descriptor: MERCURY (II) ION, MOLECULE: PPPDE1 (PERMUTED PAPAIN FOLD PEPTIDASES OF DSRNA VIRUSES AND EUKARYOTES 1), UPF0326 protein FAM152B
Authors:Walker, J.R, Akutsu, M, Qiu, L, Li, Y, Slessarev, Y, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Botchkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2008-08-28
Release date:2008-11-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Human PPPDE1
To be Published
4REX
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BU of 4rex by Molmil
Crystal structure of the first WW domain of human YAP2 isoform
Descriptor: SULFATE ION, Yorkie homolog
Authors:Camara-Artigas, A.
Deposit date:2014-09-24
Release date:2015-08-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the first WW domain of human YAP2 isoform.
J.Struct.Biol., 191, 2015
2IT7
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BU of 2it7 by Molmil
Solution structure of the squash trypsin inhibitor EETI-II
Descriptor: Trypsin inhibitor 2
Authors:Chiche, L, Heitz, A, Le-Nguyen, D.
Deposit date:2006-10-19
Release date:2007-10-02
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Knottin cyclization: Structure and stability of cyclic and linear squash inhibitors do not differ significantly
To be Published
3EB1
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BU of 3eb1 by Molmil
Crystal structure PTP1B complex with small molecule inhibitor LZP-25
Descriptor: 4-[3-(dibenzylamino)phenyl]-2,4-dioxobutanoic acid, Tyrosine-protein phosphatase non-receptor type 1
Authors:Liu, S, Zheng, L.-F, Wu, L, Yu, X, Xue, T, Gunawan, A.M, Long, Y.-Q, Zhang, Z.-Y.
Deposit date:2008-08-26
Release date:2009-07-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Targeting inactive enzyme conformation: aryl diketoacid derivatives as a new class of PTP1B inhibitors.
J.Am.Chem.Soc., 130, 2008
7ZOM
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BU of 7zom by Molmil
Crystal structure of N-terminal catalytic domain of human PLAAT3
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Phospholipase A and acyltransferase 3
Authors:von Castelmur, E, Perrakis, A.
Deposit date:2022-04-26
Release date:2023-04-26
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Crystal structure of N-terminal catalytic domain of human PLAAT3
To Be Published

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