Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89111 results

8OJO
DownloadVisualize
BU of 8ojo by Molmil
Galectin-3 in complex with 2,6-Anhydro-5-S-(beta-D-galactopyranosyl)-5-thio-D-altritol
Descriptor: 1-deoxy-alpha-D-mannopyranose, 1-thio-beta-D-galactopyranose, Galectin-3, ...
Authors:Tsagkarakou, A.S, Leonidas, D.D.
Deposit date:2023-03-24
Release date:2023-09-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Strong Binding of C -Glycosylic1,2-Thiodisaccharides to Galectin-3─Enthalpy-Driven Affinity Enhancement by Water-Mediated Hydrogen Bonds.
J.Med.Chem., 66, 2023
5DIY
DownloadVisualize
BU of 5diy by Molmil
Thermobaculum terrenum O-GlcNAc hydrolase mutant - D120N
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hyaluronidase, TGF-beta-activated kinase 1 and MAP3K7-binding protein 1
Authors:Ostrowski, A, Gundogdu, M, Ferenbach, A.T, Lebedev, A, van Aalten, D.M.F.
Deposit date:2015-09-01
Release date:2015-10-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Evidence for a Functional O-Linked N-Acetylglucosamine (O-GlcNAc) System in the Thermophilic Bacterium Thermobaculum terrenum.
J.Biol.Chem., 290, 2015
5K19
DownloadVisualize
BU of 5k19 by Molmil
Crystal structure of WD repeat-containing protein 20
Descriptor: GLYCEROL, SULFATE ION, WD repeat-containing protein 20
Authors:Li, H, D'Andrea, A.D, Zheng, N.
Deposit date:2016-05-17
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Allosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20.
Mol.Cell, 63, 2016
5UNG
DownloadVisualize
BU of 5ung by Molmil
XFEL structure of human angiotensin II type 2 receptor (Orthorhombic form) in complex with compound 1 (N-benzyl-N-(2-ethyl-4-oxo-3-{[2'-(2H-tetrazol-5-yl)[1,1'-biphenyl]-4-yl] methyl}-3,4-dihydroquinazolin-6-yl)thiophene-2-carboxamide)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Chimera protein of Type-2 angiotensin II receptor and Soluble cytochrome b562, N-benzyl-N-(2-ethyl-4-oxo-3-{[2'-(2H-tetrazol-5-yl)[1,1'-biphenyl]-4-yl]methyl}-3,4-dihydroquinazolin-6-yl)thiophene-2-carboxamide, ...
Authors:Zhang, H, Han, G.W, Batyuk, A, Ishchenko, A, White, K.L, Patel, N, Sadybekov, A, Zamlynny, B, Rudd, M.T, Hollenstein, K, Tolstikova, A, White, T.A, Hunter, M.S, Weierstall, U, Liu, W, Babaoglu, K, Moore, E.L, Katz, R.D, Shipman, J.M, Garcia-Calvo, M, Sharma, S, Sheth, P, Soisson, S.M, Stevens, R.C, Katritch, V, Cherezov, V.
Deposit date:2017-01-30
Release date:2017-04-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for selectivity and diversity in angiotensin II receptors.
Nature, 544, 2017
8C3Q
DownloadVisualize
BU of 8c3q by Molmil
Crystal structure of DYRK1A in complex with rutin
Descriptor: Dual specificity tyrosine-phosphorylation-regulated kinase 1A, RUTIN
Authors:Grygier, P, Pustelny, K, Dubin, G, Czarna, A.
Deposit date:2022-12-28
Release date:2024-01-10
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Crystal structure of DYRK1A in complex with rutin
To Be Published
5DII
DownloadVisualize
BU of 5dii by Molmil
Structure of an engineered bacterial microcompartment shell protein binding a [4Fe-4S] cluster
Descriptor: IRON/SULFUR CLUSTER, Microcompartments protein
Authors:Sutter, M, Aussignargues, C, Turmo, A, Kerfeld, C.A.
Deposit date:2015-09-01
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.804 Å)
Cite:Structure and Function of a Bacterial Microcompartment Shell Protein Engineered to Bind a [4Fe-4S] Cluster.
J.Am.Chem.Soc., 138, 2016
9FJW
DownloadVisualize
BU of 9fjw by Molmil
Solution NMR structure of a peptide encompassing residues 2-36 of the human formin INF2
Descriptor: Inverted formin-2
Authors:Jimenez, M.A, Comas, L, Labat-de-Hoz, L, Correas, I, Alonso, M.A.
Deposit date:2024-05-31
Release date:2024-09-11
Method:SOLUTION NMR
Cite:Structure and function of the N-terminal extension of the formin INF2.
Cell Mol Life Sci, 79, 2022
6FZA
DownloadVisualize
BU of 6fza by Molmil
Crystal Structure of lipase from Geobacillus stearothermophilus T6 methanol stable variant A187F
Descriptor: CALCIUM ION, Lipase, ZINC ION
Authors:Gihaz, S, Kanteev, M, Pazy, Y, Fishman, A.
Deposit date:2018-03-14
Release date:2018-10-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Filling the Void: Introducing Aromatic Interactions into Solvent Tunnels To Enhance Lipase Stability in Methanol.
Appl.Environ.Microbiol., 84, 2018
4RLG
DownloadVisualize
BU of 4rlg by Molmil
The clear crystal structure of pyridoxal-dependent decarboxylase from sphaerobacter thermophilus dsm 20745
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, GAMMA-AMINO-BUTANOIC ACID, GLYCEROL, ...
Authors:Wu, R, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-10-16
Release date:2014-10-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:The clear crystal structure of pyridoxal-dependent decarboxylase from sphaerobacter thermophilus dsm 20745
TO BE PUBLISHED
4TL1
DownloadVisualize
BU of 4tl1 by Molmil
GCN4-p1 with mutation to 1-Aminocyclohexanecarboxylic acid at residue 10
Descriptor: General control protein GCN4, ISOPROPYL ALCOHOL
Authors:Tavenor, N.A, Silva, K.I, Saxena, S, Horne, W.S.
Deposit date:2014-05-28
Release date:2014-08-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Origins of Structural Flexibility in Protein-Based Supramolecular Polymers Revealed by DEER Spectroscopy.
J.Phys.Chem.B, 118, 2014
4RML
DownloadVisualize
BU of 4rml by Molmil
Crystal structure of the Olfactomedin domain of latrophilin 3 in C2221 crystal form
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Latrophilin-3, MAGNESIUM ION
Authors:Ranaivoson, F.M, Liu, Q, Martini, F, Bergami, F, Von daake, S, Li, S, Demeler, B, Hendrickson, W.A, Comoletti, D.
Deposit date:2014-10-21
Release date:2015-08-19
Last modified:2015-10-07
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Structural and Mechanistic Insights into the Latrophilin3-FLRT3 Complex that Mediates Glutamatergic Synapse Development.
Structure, 23, 2015
4TL6
DownloadVisualize
BU of 4tl6 by Molmil
Crystal structure of N-terminal domain of KaiC
Descriptor: CHLORIDE ION, Circadian clock protein kinase KaiC, MAGNESIUM ION, ...
Authors:Abe, J, Hiyama, T.B, Mukaiyama, A, Son, S, Akiyama, S.
Deposit date:2014-05-29
Release date:2015-07-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.763 Å)
Cite:Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock.
Science, 349, 2015
5DJI
DownloadVisualize
BU of 5dji by Molmil
Structure of M. tuberculosis CysQ, a PAP phosphatase with AMP, PO4, and 2Mg bound
Descriptor: 3'-phosphoadenosine 5'-phosphate phosphatase, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Fisher, A.J, Erickson, A.I.
Deposit date:2015-09-02
Release date:2015-11-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.659 Å)
Cite:Crystal Structures of Mycobacterium tuberculosis CysQ, with Substrate and Products Bound.
Biochemistry, 54, 2015
5UQ3
DownloadVisualize
BU of 5uq3 by Molmil
Crystal structure of human Cdk2-Spy1-P27 ternary complex
Descriptor: Cyclin-dependent kinase 2, Cyclin-dependent kinase inhibitor 1B, Speedy protein A
Authors:McGrath, D.A, Tripathi, S.M, Rubin, S.M.
Deposit date:2017-02-06
Release date:2017-07-05
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis of divergent cyclin-dependent kinase activation by Spy1/RINGO proteins.
EMBO J., 36, 2017
2XJ8
DownloadVisualize
BU of 2xj8 by Molmil
The structure of ferrous cytochrome c peroxidase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CYTOCHROME C PEROXIDASE, MITOCHONDRIAL, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2010-07-02
Release date:2010-07-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Nature of the ferryl heme in compounds I and II.
J. Biol. Chem., 286, 2011
7PP1
DownloadVisualize
BU of 7pp1 by Molmil
Crystal structure of the P2Y12 receptor in complex with the inverse agonist selatogrel.
Descriptor: CHOLESTEROL, P2Y purinoceptor 12,Soluble cytochrome b562,P2Y purinoceptor 12, Selatogrel
Authors:Mac Sweeney, A, Tidten-Luksch, N.
Deposit date:2021-09-13
Release date:2022-11-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Inverse agonist efficacy of selatogrel blunts constitutive P2Y12 receptor signaling by inducing the inactive receptor conformation.
Biochem Pharmacol, 206, 2022
6G0S
DownloadVisualize
BU of 6g0s by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with an acetylated SIRT7 peptide (K272ac/K275ac)
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, NAD-dependent protein deacetylase sirtuin-7
Authors:Filippakopoulos, P, Picaud, S, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C.
Deposit date:2018-03-19
Release date:2018-11-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains.
Mol. Cell, 73, 2019
8OYL
DownloadVisualize
BU of 8oyl by Molmil
Coiled-Coil Domain of Human STIL, Q729L Mutant
Descriptor: CADMIUM ION, CHLORIDE ION, SCL-interrupting locus protein, ...
Authors:Martin, F.J.O, Shamir, M, Woolfson, D.N, Friedler, A.
Deposit date:2023-05-05
Release date:2023-10-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Molecular Mechanism of STIL Coiled-Coil Domain Oligomerization.
Int J Mol Sci, 24, 2023
5DQF
DownloadVisualize
BU of 5dqf by Molmil
Horse Serum Albumin (ESA) in complex with Cetirizine
Descriptor: (2-{4-[(R)-(4-chlorophenyl)(phenyl)methyl]piperazin-1-yl}ethoxy)acetic acid, (2-{4-[(S)-(4-chlorophenyl)(phenyl)methyl]piperazin-1-yl}ethoxy)acetic acid, CHLORIDE ION, ...
Authors:Handing, K.B, Shabalin, I.G, Majorek, K.A, Chruszcz, M, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2015-09-14
Release date:2015-12-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of equine serum albumin in complex with cetirizine reveals a novel drug binding site.
Mol.Immunol., 71, 2016
6C5A
DownloadVisualize
BU of 6c5a by Molmil
Human UDP-Glucose Dehydrogenase with UDP- Glc and NADH bound
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, DIMETHYL SULFOXIDE, UDP-glucose 6-dehydrogenase, ...
Authors:Gross, P.G, Fallah, J, Wood, Z.A.
Deposit date:2018-01-15
Release date:2019-01-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The A225L Substitution of hUGDH alters structure and function
To Be Published
8VJ1
DownloadVisualize
BU of 8vj1 by Molmil
Structure of C-terminal domain of telomere resolvase, ResT, from Borrelia garinii
Descriptor: Telomere resolvase ResT
Authors:Semper, C, Savchenko, A, Watanabe, N, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2024-01-05
Release date:2024-07-17
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structure analysis of the telomere resolvase from the Lyme disease spirochete Borrelia garinii reveals functional divergence of its C-terminal domain.
Nucleic Acids Res., 52, 2024
7XPN
DownloadVisualize
BU of 7xpn by Molmil
Structure of the Spring Viraemia of Carp Virus Nucleoprotein
Descriptor: Nucleoprotein
Authors:Wang, Z.X, Liu, B, Zhang, Y.A, Ouyang, S.Y.
Deposit date:2022-05-04
Release date:2023-05-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.98 Å)
Cite:Structure of the Spring Viraemia of Carp Virus Ribonucleoprotein Complex Reveals Its Assembly Mechanism and Application in Antiviral Drug Screening.
J.Virol., 97, 2023
3MB2
DownloadVisualize
BU of 3mb2 by Molmil
Kinetic and Structural Characterization of a Heterohexamer 4-Oxalocrotonate Tautomerase from Chloroflexus aurantiacus J-10-fl: Implications for Functional and Structural Diversity in the Tautomerase Superfamily
Descriptor: 4-oxalocrotonate tautomerase family enzyme - alpha subunit, 4-oxalocrotonate tautomerase family enzyme - beta subunit, SULFATE ION
Authors:Burks, E.A, Fleming, C.D, Mesecar, A.D, Whitman, C.P, Pegan, S.D.
Deposit date:2010-03-24
Release date:2010-06-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Kinetic and structural characterization of a heterohexamer 4-oxalocrotonate tautomerase from Chloroflexus aurantiacus J-10-fl: implications for functional and structural diversity in the tautomerase superfamily
Biochemistry, 49, 2010
4RS3
DownloadVisualize
BU of 4rs3 by Molmil
Crystal structure of carbohydrate transporter A0QYB3 from Mycobacterium smegmatis str. MC2 155, target EFI-510969, in complex with xylitol
Descriptor: ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, periplasmic sugar-binding protein, ...
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Morisco, L.L, Wasserman, S.R, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Hillerich, B, Siedel, R.D, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-11-06
Release date:2014-11-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A General Strategy for the Discovery of Metabolic Pathways: d-Threitol, l-Threitol, and Erythritol Utilization in Mycobacterium smegmatis.
J.Am.Chem.Soc., 137, 2015
6BWC
DownloadVisualize
BU of 6bwc by Molmil
X-ray structure of Pen from Bacillus thuringiensis
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Polysaccharide biosynthesis protein CapD, SULFATE ION, ...
Authors:Delvaux, N.A, Thoden, J.B, Holden, H.M.
Deposit date:2017-12-14
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular architectures of Pen and Pal: Key enzymes required for CMP-pseudaminic acid biosynthesis in Bacillus thuringiensis.
Protein Sci., 27, 2018

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon