Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2FAQ
DownloadVisualize
BU of 2faq by Molmil
Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with ATP and Manganese
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
Authors:Zhu, H, Nandakumar, J, Aniukwu, J, Wang, L.K, Glickman, M.S, Lima, C.D, Shuman, S.
Deposit date:2005-12-07
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
2FAO
DownloadVisualize
BU of 2fao by Molmil
Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain
Descriptor: SULFATE ION, probable ATP-dependent DNA ligase
Authors:Zhu, H, Nandakumar, J, Aniukwu, J, Wang, L.K, Glickman, M.S, Lima, C.D, Shuman, S.
Deposit date:2005-12-07
Release date:2006-05-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
2FAR
DownloadVisualize
BU of 2far by Molmil
Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with dATP and Manganese
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
Authors:Zhu, H, Nandakumar, J, Aniukwu, J, Wang, L.K, Glickman, M.S, Lima, C.D, Shuman, S.
Deposit date:2005-12-07
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
7MLV
DownloadVisualize
BU of 7mlv by Molmil
Cryo-EM reveals partially and fully assembled native glycine receptors,homomeric tetramer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3D1 Fab Heavy Chain, 3D1 Fab Light Chain, ...
Authors:Zhu, H, Gouaux, E.
Deposit date:2021-04-29
Release date:2021-09-29
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Architecture and assembly mechanism of native glycine receptors.
Nature, 599, 2021
7MLU
DownloadVisualize
BU of 7mlu by Molmil
Cryo-EM reveals partially and fully assembled native glycine receptors,homomeric pentamer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3D1 Fab Heavy Chain, 3D1 Fab Light Chain, ...
Authors:Zhu, H, Gouaux, E.
Deposit date:2021-04-29
Release date:2021-09-29
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Architecture and assembly mechanism of native glycine receptors.
Nature, 599, 2021
7MLY
DownloadVisualize
BU of 7mly by Molmil
Cryo-EM reveals partially and fully assembled native glycine receptors,heteromeric pentamer
Descriptor: 3D1 Fab Heavy Chain, 3D1 Fab Light Chain, DECANE, ...
Authors:Zhu, H, Gouaux, E.
Deposit date:2021-04-29
Release date:2021-09-29
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Architecture and assembly mechanism of native glycine receptors.
Nature, 599, 2021
3CEQ
DownloadVisualize
BU of 3ceq by Molmil
The TPR domain of Human Kinesin Light Chain 2 (hKLC2)
Descriptor: Kinesin light chain 2
Authors:Zhu, H, Shen, Y, MacKenzie, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2008-02-29
Release date:2008-08-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The TPR domain of Human Kinesin Light Chain 2 (hKLC2)
To be Published
3EDT
DownloadVisualize
BU of 3edt by Molmil
Crystal structure of the mutated S328N hKLC2 TPR domain
Descriptor: Kinesin light chain 2, UNKNOWN ATOM OR ION
Authors:Zhu, H, Shen, Y, MacKenzie, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2008-09-03
Release date:2009-02-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of mutated S328N TPR domain of human kinesin light chain 2
To be published
3NWN
DownloadVisualize
BU of 3nwn by Molmil
Crystal structure of the human KIF9 motor domain in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, Kinesin-like protein KIF9, ...
Authors:Zhu, H, Tempel, W, He, H, Shen, Y, Wang, J, Brothers, G, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2010-07-09
Release date:2010-07-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the human KIF9 motor domain in complex with ADP
To be Published
3B6V
DownloadVisualize
BU of 3b6v by Molmil
Crystal structure of the motor domain of human kinesin family member 3C in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF3C, MAGNESIUM ION, ...
Authors:Zhu, H, Tempel, W, Shen, Y, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2007-10-29
Release date:2007-11-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Motor domain of human kinesin family member 3C in complex with ADP.
To be Published
3B6U
DownloadVisualize
BU of 3b6u by Molmil
Crystal structure of the motor domain of human kinesin family member 3B in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF3B, MAGNESIUM ION, ...
Authors:Zhu, H, Shen, Y, Tempel, W, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2007-10-29
Release date:2007-11-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Motor domain of human kinesin family member 3B in complex with ADP.
To be Published
1R1N
DownloadVisualize
BU of 1r1n by Molmil
Tri-nuclear oxo-iron clusters in the ferric binding protein from N. gonorrhoeae
Descriptor: Ferric-iron Binding Protein, OXO-IRON CLUSTER 1, OXO-IRON CLUSTER 2, ...
Authors:Zhu, H, Alexeev, D, Hunter, D.J, Campopiano, D.J, Sadler, P.J.
Deposit date:2003-09-24
Release date:2004-03-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Oxo-iron clusters in a bacterial iron-trafficking protein: new roles for a conserved motif.
Biochem.J., 376, 2003
8FO8
DownloadVisualize
BU of 8fo8 by Molmil
Cryo-EM structure of Rab29-LRRK2 complex in the LRRK2 dimer state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2, ...
Authors:Zhu, H, Sun, J.
Deposit date:2022-12-29
Release date:2024-01-03
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Rab29-dependent asymmetrical activation of leucine-rich repeat kinase 2.
Science, 382, 2023
7U2N
DownloadVisualize
BU of 7u2n by Molmil
A novel compound mimics the structural and functional effects of the full agonist glycine on glycine channels-open state
Descriptor: Glycine receptor subunit alphaZ1, aminomethanesulfonic acid, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Zhu, H, Gouaux, E.
Deposit date:2022-02-24
Release date:2023-03-08
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:A novel compound mimics the structural and functional effects of the full agonist glycine on glycine channels-open state
To Be Published
7U2M
DownloadVisualize
BU of 7u2m by Molmil
A novel compound mimics the structural and functional effects of the full agonist glycine on glycine channels-desenstized state
Descriptor: Glycine receptor subunit alphaZ1, aminomethanesulfonic acid, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Zhu, H, Gouaux, E.
Deposit date:2022-02-24
Release date:2023-03-08
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A novel compound mimics the structural and functional effects of the full agonist glycine on glycine channels-desenstized state
To Be Published
8FO2
DownloadVisualize
BU of 8fo2 by Molmil
Cryo-EM structure of Rab29-LRRK2 complex in the LRRK2 monomer state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2, ...
Authors:Zhu, H, Sun, J.
Deposit date:2022-12-29
Release date:2024-01-03
Method:ELECTRON MICROSCOPY (4.13 Å)
Cite:Rab29-dependent asymmetrical activation of leucine-rich repeat kinase 2.
Science, 382, 2023
8FO9
DownloadVisualize
BU of 8fo9 by Molmil
Cryo-EM structure of Rab29-LRRK2 complex in the LRRK2 tetramer state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2, ...
Authors:Zhu, H, Sun, J.
Deposit date:2022-12-30
Release date:2024-01-03
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Rab29-dependent asymmetrical activation of leucine-rich repeat kinase 2.
Science, 382, 2023
8FO7
DownloadVisualize
BU of 8fo7 by Molmil
Cryo-EM structure of LRRK2 bound to type I inhibitor LRRK2-IN-1
Descriptor: 2-[(2-methoxy-4-{[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl}phenyl)amino]-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2
Authors:Zhu, H, Sun, J.
Deposit date:2022-12-29
Release date:2024-01-17
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Pharmacology of LRRK2 with type I and II kinase inhibitors revealed by cryo-EM.
Cell Discov, 10, 2024
7U2O
DownloadVisualize
BU of 7u2o by Molmil
A novel compound mimics the structural and functional effects of the full agonist glycine on glycine channels-Expanded-open state
Descriptor: Glycine receptor subunit alphaZ1, aminomethanesulfonic acid, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Zhu, H, Gouaux, E.
Deposit date:2022-02-24
Release date:2023-03-01
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A novel compound mimics the structural and functional effects of the full agonist glycine on glycine channels-Expanded-open state
To Be Published
8U7L
DownloadVisualize
BU of 8u7l by Molmil
Cryo-EM structure of LRRK2 bound to type II inhibitor GZD824
Descriptor: 4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}-3-[(1H-pyrazolo[3,4-b]pyridin-5-yl)ethynyl]benzamide, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2
Authors:Zhu, H, Sun, J.
Deposit date:2023-09-15
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Pharmacology of LRRK2 with type I and II kinase inhibitors revealed by cryo-EM.
Cell Discov, 10, 2024
8U7H
DownloadVisualize
BU of 8u7h by Molmil
Cryo-EM structure of LRRK2 bound to type I inhibitor GNE-7915
Descriptor: GUANOSINE-5'-DIPHOSPHATE, [4-[[4-(ethylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino]-2-fluoranyl-5-methoxy-phenyl]-morpholin-4-yl-methanone, non-specific serine/threonine protein kinase
Authors:Zhu, H, Sun, J.
Deposit date:2023-09-15
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Pharmacology of LRRK2 with type I and II kinase inhibitors revealed by cryo-EM.
Cell Discov, 10, 2024
8U8A
DownloadVisualize
BU of 8u8a by Molmil
Cryo-EM structure of LRRK2 bound to type II inhibitor ponatinib
Descriptor: 3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2
Authors:Zhu, H, Sun, J.
Deposit date:2023-09-16
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Pharmacology of LRRK2 with type I and II kinase inhibitors revealed by cryo-EM.
Cell Discov, 10, 2024
8U8B
DownloadVisualize
BU of 8u8b by Molmil
Cryo-EM structure of LRRK2 bound to type II inhibitor rebastinib
Descriptor: 4-[4-({[3-tert-butyl-1-(quinolin-6-yl)-1H-pyrazol-5-yl]carbamoyl}amino)-3-fluorophenoxy]-N-methylpyridine-2-carboxamide, GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2
Authors:Zhu, H, Sun, J.
Deposit date:2023-09-16
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Pharmacology of LRRK2 with type I and II kinase inhibitors revealed by cryo-EM.
Cell Discov, 10, 2024
6JLQ
DownloadVisualize
BU of 6jlq by Molmil
Crystal structure of human USP46-WDR48-WDR20 complex
Descriptor: GLYCEROL, PHOSPHATE ION, Ubiquitin carboxyl-terminal hydrolase 46, ...
Authors:Zhu, H, Zhang, T, Ding, J.
Deposit date:2019-03-06
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:Structural insights into the activation of USP46 by WDR48 and WDR20.
Cell Discov, 5, 2019
2IA5
DownloadVisualize
BU of 2ia5 by Molmil
T4 polynucleotide kinase/phosphatase with bound sulfate and magnesium.
Descriptor: ARSENIC, MAGNESIUM ION, Polynucleotide kinase, ...
Authors:Zhu, H, Smith, P.C, Wang, L.K, Lima, C.D, Shuman, S.
Deposit date:2006-09-07
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-function analysis of the 3' phosphatase component of T4 polynucleotide kinase/phosphatase.
Virology, 366, 2007

227561

PDB entries from 2024-11-20

PDB statisticsPDBj update infoContact PDBjnumon