5DNV
| Crystal structure of KAI2-like protein from Striga (apo state 2) | Descriptor: | BENZOIC ACID, FORMIC ACID, ShKAI2iB | Authors: | Xu, Y, Miyakawa, T, Nakamura, A, Tanokura, M. | Deposit date: | 2015-09-10 | Release date: | 2016-08-17 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Structural basis of unique ligand specificity of KAI2-like protein from parasitic weed Striga hermonthica Sci Rep, 6, 2016
|
|
1WDF
| crystal structure of MHV spike protein fusion core | Descriptor: | E2 glycoprotein | Authors: | Xu, Y, Liu, Y, Lou, Z, Qin, L, Li, X, Bai, Z, Tien, P, Gao, G.F, Rao, Z. | Deposit date: | 2004-05-14 | Release date: | 2004-06-15 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural Basis for Coronavirus-mediated Membrane Fusion: CRYSTAL STRUCTURE OF MOUSE HEPATITIS VIRUS SPIKE PROTEIN FUSION CORE J.Biol.Chem., 279, 2004
|
|
1WDG
| crystal structure of MHV spike protein fusion core | Descriptor: | E2 glycoprotein | Authors: | Xu, Y, Liu, Y, Lou, Z, Qin, L, Li, X, Bai, Z, Tien, P, Gao, G.F, Rao, Z. | Deposit date: | 2004-05-14 | Release date: | 2004-06-15 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.06 Å) | Cite: | Structural Basis for Coronavirus-mediated Membrane Fusion: CRYSTAL STRUCTURE OF MOUSE HEPATITIS VIRUS SPIKE PROTEIN FUSION CORE J.Biol.Chem., 279, 2004
|
|
1WP7
| crystal structure of Nipah Virus fusion core | Descriptor: | fusion protein | Authors: | Xu, Y, Liu, Y, Lou, Z, Su, N, Bai, Z, Gao, G.F, Rao, Z. | Deposit date: | 2004-08-31 | Release date: | 2005-11-15 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of Nipah Virus fusion core To be Published
|
|
1WNC
| Crystal structure of the SARS-CoV Spike protein fusion core | Descriptor: | E2 glycoprotein | Authors: | Xu, Y, Lou, Z, Liu, Y, Pang, H, Tien, P, Gao, G.F, Rao, Z. | Deposit date: | 2004-07-29 | Release date: | 2004-09-07 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of severe acute respiratory syndrome coronavirus spike protein fusion core J.Biol.Chem., 279, 2004
|
|
1U9I
| Crystal Structure of Circadian Clock Protein KaiC with Phosphorylation Sites | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, KaiC, MAGNESIUM ION | Authors: | Xu, Y, Mori, T, Pattanayek, R, Pattanayek, S, Egli, M, Johnson, C.H. | Deposit date: | 2004-08-09 | Release date: | 2005-04-19 | Last modified: | 2023-08-23 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses PROC.NATL.ACAD.SCI.USA, 101, 2004
|
|
4J0E
| |
4J0F
| |
1UL3
| Crystal Structure of PII from Synechocystis sp. PCC 6803 | Descriptor: | CALCIUM ION, GLYCEROL, Nitrogen regulatory protein P-II | Authors: | Xu, Y, Carr, P.D, Clancy, P, Garcia-Dominguez, M, Forchhammer, K, Florencio, F, Tandeau de Marsac, N, Vasudevan, S.G, Ollis, D.L. | Deposit date: | 2003-09-09 | Release date: | 2003-12-16 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The structures of the PII proteins from the cyanobacteria Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803. Acta Crystallogr.,Sect.D, 59, 2003
|
|
1V4A
| Structure of the N-terminal Domain of Escherichia coli Glutamine Synthetase adenylyltransferase | Descriptor: | Glutamate-ammonia-ligase adenylyltransferase | Authors: | Xu, Y, Zhang, R, Joachimiak, A, Carr, P.D, Ollis, D.L, Vasudevan, S.G. | Deposit date: | 2003-11-12 | Release date: | 2004-07-27 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure of the n-terminal domain of Escherichia coli glutamine synthetase adenylyltransferase Structure, 12, 2004
|
|
1UX4
| Crystal structures of a Formin Homology-2 domain reveal a tethered-dimer architecture | Descriptor: | BNI1 PROTEIN | Authors: | Xu, Y, Moseley, J.B, Sagot, I, Poy, F, Pellman, D, Goode, B.L, Eck, M.J. | Deposit date: | 2004-02-19 | Release date: | 2004-03-11 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Crystal Structures of a Formin Homology-2 Domain Reveal a Tethered Dimer Architecture Cell(Cambridge,Mass.), 116, 2004
|
|
1UX5
| Crystal Structures of a Formin Homology-2 domain reveal a flexibly tethered dimer architecture | Descriptor: | BNI1 PROTEIN | Authors: | Xu, Y, Moseley, J.B, Sagot, I, Poy, F, Pellman, D, Goode, B.L, Eck, M.J. | Deposit date: | 2004-02-19 | Release date: | 2004-03-11 | Last modified: | 2019-05-08 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal Structures of a Formin Homology-2 Domain Reveal a Tethered Dimer Architecture Cell(Cambridge,Mass.), 116, 2004
|
|
4DK0
| |
4DK1
| |
4U7L
| LRIG1 extracellular domain: Structure and Function Analysis | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... | Authors: | Xu, Y. | Deposit date: | 2014-07-31 | Release date: | 2015-04-08 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | LRIG1 Extracellular Domain: Structure and Function Analysis. J.Mol.Biol., 427, 2015
|
|
3K7D
| C-terminal (adenylylation) domain of E.coli Glutamine Synthetase Adenylyltransferase | Descriptor: | Glutamate-ammonia-ligase adenylyltransferase, SULFATE ION | Authors: | Xu, Y, Carr, P.D, Vasudevan, S.G, Ollis, D.L. | Deposit date: | 2009-10-12 | Release date: | 2009-12-15 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structure of the Adenylylation Domain of E. coli Glutamine Synthetase Adenylyl Transferase: Evidence for Gene Duplication and Evolution of a New Active Site. J.Mol.Biol., 396, 2010
|
|
4U7M
| LRIG1 extracellular domain: Structure and Function Analysis | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeats and immunoglobulin-like domains protein 1 | Authors: | Xu, Y. | Deposit date: | 2014-07-31 | Release date: | 2015-04-08 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (2.757 Å) | Cite: | LRIG1 Extracellular Domain: Structure and Function Analysis. J.Mol.Biol., 427, 2015
|
|
3K6N
| Crystal structure of the S225E mutant Kir3.1 cytoplasmic pore domain | Descriptor: | G protein-activated inward rectifier potassium channel 1, SODIUM ION | Authors: | Xu, Y, Shin, H.G, Szep, S, Lu, Z. | Deposit date: | 2009-10-09 | Release date: | 2009-11-17 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Physical determinants of strong voltage sensitivity of K(+) channel block. Nat.Struct.Mol.Biol., 16, 2009
|
|
2GNK
| GLNK, A SIGNAL PROTEIN FROM E. COLI | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, PROTEIN (NITROGEN REGULATORY PROTEIN) | Authors: | Xu, Y, Cheah, E, Carr, P.D, van Heeswijk, W.C, Westerhoff, H.V, Vasudevan, S.G, Ollis, D.L. | Deposit date: | 1998-07-14 | Release date: | 1999-07-23 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | GlnK, a PII-homologue: structure reveals ATP binding site and indicates how the T-loops may be involved in molecular recognition. J.Mol.Biol., 282, 1998
|
|
3FTJ
| |
2KI7
| The solution structure of RPP29-RPP21 complex from Pyrococcus furiosus | Descriptor: | Ribonuclease P protein component 1, Ribonuclease P protein component 4, ZINC ION | Authors: | Xu, Y, Foster, M.P. | Deposit date: | 2009-04-28 | Release date: | 2009-09-15 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution structure of an archaeal RNase P binary protein complex: formation of the 30-kDa complex between Pyrococcus furiosus RPP21 and RPP29 is accompanied by coupled protein folding and highlights critical features for protein-protein and protein-RNA interactions. J.Mol.Biol., 393, 2009
|
|
2MP2
| Solution structure of SUMO dimer in complex with SIM2-3 from RNF4 | Descriptor: | E3 ubiquitin-protein ligase RNF4, Small ubiquitin-related modifier 3 | Authors: | Xu, Y, Plechanovov, A, Simpson, P, Marchant, J, Leidecker, O, Sebastian, K, Hay, R.T, Matthews, S.J. | Deposit date: | 2014-05-09 | Release date: | 2014-07-02 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4. Nat Commun, 5, 2014
|
|
5H3E
| Crystal structure of mouse isocitrate dehydrogenases 2 K256Q mutant complexed with isocitrate | Descriptor: | ISOCITRIC ACID, Isocitrate dehydrogenase [NADP], mitochondrial, ... | Authors: | Xu, Y, Liu, L, Miyakawa, T, Nakamura, A, Tanokura, M. | Deposit date: | 2016-10-23 | Release date: | 2017-08-30 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Studies on the regulatory mechanism of isocitrate dehydrogenase 2 using acetylation mimics Sci Rep, 7, 2017
|
|
5H3F
| Crystal structure of mouse isocitrate dehydrogenases 2 complexed with isocitrate | Descriptor: | ISOCITRIC ACID, Isocitrate dehydrogenase [NADP], mitochondrial, ... | Authors: | Xu, Y, Liu, L, Miyakawa, T, Nakamura, A, Tanokura, M. | Deposit date: | 2016-10-23 | Release date: | 2017-08-30 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.29 Å) | Cite: | Studies on the regulatory mechanism of isocitrate dehydrogenase 2 using acetylation mimics Sci Rep, 7, 2017
|
|
8HDZ
| Monkeypox virus DNA replication holoenzyme F8, A22 and E4 complex in an apo form | Descriptor: | A22 DNA replication processivity factor, E4 uracil-DNA glycosylase, F8 DNA polymerase | Authors: | Xu, Y, Wu, Y, Zhang, Y, Fan, R, Yang, Y, Li, D, Yang, B, Zhang, Z, Dong, C. | Deposit date: | 2022-11-07 | Release date: | 2023-11-15 | Method: | ELECTRON MICROSCOPY (3.05 Å) | Cite: | Cryo-EM structures of human monkeypox viral replication complexes with and without DNA duplex. Cell Res., 33, 2023
|
|