Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2UY6
DownloadVisualize
BU of 2uy6 by Molmil
Crystal structure of the P pilus rod subunit PapA
Descriptor: PAP FIMBRIAL MAJOR PILIN PROTEIN, PERIPLASMID CHAPERONE PAPD PROTEIN
Authors:Verger, D, Bullitt, E, Hultgren, S.J, Waksman, G.
Deposit date:2007-04-02
Release date:2007-05-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the P Pilus Rod Subunit Papa.
Plos Pathog., 3, 2007
2UY7
DownloadVisualize
BU of 2uy7 by Molmil
Crystal structure of the P pilus rod subunit PapA
Descriptor: PAP FIMBRIAL MAJOR PILIN PROTEIN, PERIPLASMID CHAPERONE PAPD PROTEIN, SULFATE ION
Authors:Verger, D, Bullitt, E, Hultgren, S.J, Waksman, G.
Deposit date:2007-04-02
Release date:2007-05-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the P Pilus Rod Subunit Papa.
Plos Pathog., 3, 2007
2VQI
DownloadVisualize
BU of 2vqi by Molmil
Structure of the P pilus usher (PapC) translocation pore
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, LAURYL DIMETHYLAMINE-N-OXIDE, OUTER MEMBRANE USHER PROTEIN PAPC
Authors:Remaut, H, Tang, C, Henderson, N.S, Pinkner, J.S, Wang, T, Hultgren, S.J, Thanassi, D.G, Li, H, Waksman, G.
Deposit date:2008-03-16
Release date:2008-05-27
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Fiber formation across the bacterial outer membrane by the chaperone/usher pathway.
Cell, 133, 2008
6SZ9
DownloadVisualize
BU of 6sz9 by Molmil
Type IV Coupling Complex (T4CC) from L. pneumophila.
Descriptor: DotY, DotZ, IcmJ (DotN), ...
Authors:Mace, K, Meir, A, Lukoyanova, N, Waksman, G.
Deposit date:2019-10-02
Release date:2020-05-13
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanism of effector capture and delivery by the type IV secretion system from Legionella pneumophila.
Nat Commun, 11, 2020
3JQO
DownloadVisualize
BU of 3jqo by Molmil
Crystal structure of the outer membrane complex of a type IV secretion system
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, LAURYL DIMETHYLAMINE-N-OXIDE, TraF protein, ...
Authors:Chandran, V, Fronzes, R, Duquerroy, S, Cronin, N, Navaza, J, Waksman, G.
Deposit date:2009-09-07
Release date:2009-12-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the outer membrane complex of a type IV secretion system
Nature, 462, 2009
3KTQ
DownloadVisualize
BU of 3ktq by Molmil
CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), ...
Authors:Li, Y, Waksman, G.
Deposit date:1998-07-28
Release date:1999-01-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998
3LFU
DownloadVisualize
BU of 3lfu by Molmil
Crystal Structure of E. coli UvrD
Descriptor: DNA helicase II, SULFATE ION
Authors:Korolev, S, Waksman, G, Lohman, T.M.
Deposit date:2010-01-18
Release date:2011-02-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Rotations of the 2B sub-domain of E. coli UvrD helicase/translocase coupled to nucleotide and DNA binding.
J.Mol.Biol., 411, 2011
1J8S
DownloadVisualize
BU of 1j8s by Molmil
PAPG ADHESIN RECEPTOR BINDING DOMAIN-UNBOUND FORM
Descriptor: PYELONEPHRITIC ADHESIN
Authors:Dodson, K.W, Pinkner, J.S, Rose, T, Magnusson, G, Hultgren, S.J, Waksman, G.
Deposit date:2001-05-22
Release date:2001-06-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of the interaction of the pyelonephritic E. coli adhesin to its human kidney receptor.
Cell(Cambridge,Mass.), 105, 2001
1J8R
DownloadVisualize
BU of 1j8r by Molmil
BINARY COMPLEX OF THE PAPG RECEPTOR-BINDING DOMAIN BOUND TO GBO4 RECEPTOR
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, PYELONEPHRITIC ADHESIN
Authors:Dodson, K.W, Pinkner, J.S, Rose, T, Magnusson, G, Hultgren, S.J, Waksman, G, Midwest Center for Structural Genomics (MCSG)
Deposit date:2001-05-22
Release date:2001-06-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of the interaction of the pyelonephritic E. coli adhesin to its human kidney receptor.
Cell(Cambridge,Mass.), 105, 2001
1KA8
DownloadVisualize
BU of 1ka8 by Molmil
Crystal Structure of the Phage P4 Origin-Binding Domain
Descriptor: putative P4-specific DNA primase
Authors:Yeo, H.J, Ziegelin, G, Korolev, S, Calendar, R, Lanka, E, Waksman, G.
Deposit date:2001-10-31
Release date:2002-04-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Phage P4 origin-binding domain structure reveals a mechanism for regulation of DNA-binding activity by homo- and heterodimerization of winged helix proteins.
Mol.Microbiol., 43, 2002
5O96
DownloadVisualize
BU of 5o96 by Molmil
Structure of the putative methyltransferase Lpg2936 from Legionella pneumophila in complex with the bound cofactor SAM
Descriptor: Ribosomal RNA small subunit methyltransferase E, S-ADENOSYLMETHIONINE
Authors:Pinotsis, N, Waksman, G.
Deposit date:2017-06-15
Release date:2017-11-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the Legionella pneumophila Lpg2936 in complex with the cofactor S-adenosyl-L-methionine reveals novel insights into the mechanism of RsmE family methyltransferases.
Protein Sci., 26, 2017
5O95
DownloadVisualize
BU of 5o95 by Molmil
Structure of the putative methyltransferase Lpg2936 from Legionella pneumophila
Descriptor: Ribosomal RNA small subunit methyltransferase E
Authors:Pinotsis, N, Waksman, G.
Deposit date:2017-06-15
Release date:2017-11-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.491 Å)
Cite:Crystal structure of the Legionella pneumophila Lpg2936 in complex with the cofactor S-adenosyl-L-methionine reveals novel insights into the mechanism of RsmE family methyltransferases.
Protein Sci., 26, 2017
5OH0
DownloadVisualize
BU of 5oh0 by Molmil
The Cryo-Electron Microscopy Structure of the Type 1 Chaperone-Usher Pilus Rod
Descriptor: Type-1 fimbrial protein, A chain
Authors:Hospenthal, M.K, Costa, T.R.D, Redzej, A, Waksman, G.
Deposit date:2017-07-13
Release date:2017-11-22
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:The Cryoelectron Microscopy Structure of the Type 1 Chaperone-Usher Pilus Rod.
Structure, 25, 2017
2GZA
DownloadVisualize
BU of 2gza by Molmil
Crystal structure of the VirB11 ATPase from the Brucella Suis type IV secretion system in complex with sulphate
Descriptor: SULFATE ION, Type IV secretion system protein VirB11
Authors:Hare, S, Bayliss, R, Baron, C, Waksman, G.
Deposit date:2006-05-11
Release date:2006-07-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Large Domain Swap in the VirB11 ATPase of Brucella suis Leaves the Hexameric Assembly Intact
J.Mol.Biol., 360, 2006
2J7L
DownloadVisualize
BU of 2j7l by Molmil
E. coli P Pilus chaperone PapD in complex with a pilus biogenesis inhibitor, pilicide 2c
Descriptor: (3R)-8-CYCLOPROPYL-6-(MORPHOLIN-4-YLMETHYL)-7-(1-NAPHTHYLMETHYL)-5-OXO-2,3-DIHYDRO-5H-[1,3]THIAZOLO[3,2-A]PYRIDINE-3-CARBOXYLIC ACID, CHAPERONE PROTEIN PAPD
Authors:Remaut, H, Pinkner, J.S, Hultgren, S.J, Almqvist, F, Waksman, G.
Deposit date:2006-10-12
Release date:2006-11-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Rationally Designed Small Compounds Inhibit Pilus Biogenesis in Uropathogenic Bacteria.
Proc.Natl.Acad.Sci.USA, 103, 2006
2CO7
DownloadVisualize
BU of 2co7 by Molmil
Salmonella enterica SafA pilin in complex with the SafB chaperone (Type II)
Descriptor: PUTATIVE FIMBRIAE ASSEMBLY CHAPERONE, SAFA PILUS SUBUNIT, SULFATE ION
Authors:Remaut, H, Rose, R.J, Hannan, T.J, Hultgren, S.J, Radford, S.E, Ashcroft, A.E, Waksman, G.
Deposit date:2006-05-25
Release date:2006-06-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Proceeds Through a Concerted Beta-Strand Displacement Mechanism
Mol.Cell, 22, 2006
2CO4
DownloadVisualize
BU of 2co4 by Molmil
Salmonella enterica SafA pilin in complex with a 19-residue SafA Nte peptide
Descriptor: PUTATIVE OUTER MEMBRANE PROTEIN
Authors:Remaut, H, Rose, R.J, Hannan, T.J, Hultgren, S.J, Radford, S.E, Ashcroft, A.E, Waksman, G.
Deposit date:2006-05-25
Release date:2006-06-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Proceeds Through a Concerted Beta-Strand Displacement Mechanism
Mol.Cell, 22, 2006
2CNZ
DownloadVisualize
BU of 2cnz by Molmil
Salmonella enterica SafA pilin in complex with a 19-residue SafA Nte peptide (V13A mutant)
Descriptor: PUTATIVE OUTER MEMBRANE PROTEIN
Authors:Remaut, H, Rose, R.J, Hannan, T.J, Hultgren, S.J, Radford, S.E, Ashcroft, A.E, Waksman, G.
Deposit date:2006-05-25
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Proceeds Through a Concerted Beta-Strand Displacement Mechanism
Mol.Cell, 22, 2006
2CO2
DownloadVisualize
BU of 2co2 by Molmil
Salmonella enterica SafA pilin in complex with a 19-residue SafA Nte peptide (F3A mutant)
Descriptor: SAFA N-TERMINAL EXTENSION, SAFA PILUS SUBUNIT
Authors:Remaut, H, Rose, R.J, Hannan, T.J, Hultgren, S.J, Radford, S.E, Ashcroft, A.E, Waksman, G.
Deposit date:2006-05-25
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Proceeds Through a Concerted Beta-Strand Displacement Mechanism
Mol.Cell, 22, 2006
2CNY
DownloadVisualize
BU of 2cny by Molmil
Salmonella enterica SafA pilin in complex with a 19-residue SafA Nte peptide (I15A mutant)
Descriptor: PUTATIVE OUTER MEMBRANE PROTEIN
Authors:Remaut, H, Rose, R.J, Hannan, T.J, Hultgren, S.J, Radford, S.E, Ashcroft, A.E, Waksman, G.
Deposit date:2006-05-25
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Proceeds Through a Concerted Beta-Strand Displacement Mechanism
Mol.Cell, 22, 2006
2CO1
DownloadVisualize
BU of 2co1 by Molmil
Salmonella enterica SafA pilin in complex with a 19-residue SafA Nte peptide (F17A mutant)
Descriptor: PUTATIVE OUTER MEMBRANE PROTEIN
Authors:Remaut, H, Rose, R.J, Hannan, T.J, Hultgren, S.J, Radford, S.E, Ashcroft, A.E, Waksman, G.
Deposit date:2006-05-25
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Proceeds Through a Concerted Beta-Strand Displacement Mechanism
Mol.Cell, 22, 2006
2CO3
DownloadVisualize
BU of 2co3 by Molmil
Salmonella enterica SafA pilin, head-to-tail swapped dimer of Ntd1 mutant
Descriptor: SAFA PILUS SUBUNIT
Authors:Remaut, H, Rose, R.J, Hannan, T.J, Hultgren, S.J, Radford, S.E, Ashcroft, A.E, Waksman, G.
Deposit date:2006-05-25
Release date:2006-06-27
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Proceeds Through a Concerted Beta-Strand Displacement Mechanism
Mol.Cell, 22, 2006
2J2Z
DownloadVisualize
BU of 2j2z by Molmil
X-Ray Structure of the Chaperone PapD in complex with the Pilus terminator subunit PapH at 2.3 Angstrom resolution
Descriptor: CHAPERONE PROTEIN PAPD, COBALT (II) ION, PAP FIMBRIAL MINOR PILIN PROTEIN, ...
Authors:Verger, D, Miller, E, Remaut, H, Waksman, G, Hultgren, S.
Deposit date:2006-08-17
Release date:2006-11-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular Mechanism of P Pilus Termination in Uropathogenic Escherichia Coli.
Embo Rep., 7, 2006
2CO6
DownloadVisualize
BU of 2co6 by Molmil
Salmonella enterica SafA pilin in complex with the SafB chaperone (Type I)
Descriptor: PUTATIVE FIMBRIAE ASSEMBLY CHAPERONE, PUTATIVE OUTER MEMBRANE PROTEIN
Authors:Remaut, H, Rose, R.J, Hannan, T.J, Hultgren, S.J, Radford, S.E, Ashcroft, A.E, Waksman, G.
Deposit date:2006-05-25
Release date:2006-06-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Proceeds Through a Concerted Beta-Strand Displacement Mechanism
Mol.Cell, 22, 2006
2KT6
DownloadVisualize
BU of 2kt6 by Molmil
Structural homology between the C-terminal domain of the PapC usher and its plug
Descriptor: Outer membrane usher protein papC
Authors:Ford, B, Rego, A, Ragan, T.J, Pinkner, J, Dodson, K, Driscoll, P.C, Hultgren, S, Waksman, G.
Deposit date:2010-01-19
Release date:2010-04-21
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structural Homology between the C-Terminal Domain of the PapC Usher and Its Plug.
J.Bacteriol., 192, 2010

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon