2VQI

Structure of the P pilus usher (PapC) translocation pore

Summary for 2VQI

DescriptorOUTER MEMBRANE USHER PROTEIN PAPC, LAURYL DIMETHYLAMINE-N-OXIDE, (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, ... (4 entities in total)
Functional Keywordstransmembrane, outer membrane, transport, usher, p pilus, membrane, fimbrium, om translocation pore, pilus assembly platform
Biological sourceESCHERICHIA COLI
Total number of polymer chains2
Total molecular weight116329.65
Authors
Remaut, H.,Tang, C.,Henderson, N.S.,Pinkner, J.S.,Wang, T.,Hultgren, S.J.,Thanassi, D.G.,Li, H.,Waksman, G. (deposition date: 2008-03-16, release date: 2008-05-27, Last modification date: 2019-01-16)
Primary citation
Remaut, H.,Tang, C.,Henderson, N.S.,Pinkner, J.S.,Wang, T.,Hultgren, S.J.,Thanassi, D.G.,Waksman, G.,Li, H.
Fiber formation across the bacterial outer membrane by the chaperone/usher pathway.
Cell, 133:640-652, 2008
PubMed: 18485872 (PDB entries with the same primary citation)
DOI: 10.1016/j.cell.2008.03.033
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (3.2 Å)
?

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.30032 1.4% 16.6% 0.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2vqi
no rotation
Molmil generated image of 2vqi
rotated about x axis by 90°
Molmil generated image of 2vqi
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 2vqi
no rotation
Molmil generated image of 2vqi
rotated about x axis by 90°
Molmil generated image of 2vqi
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2vqi.pdb1.gz [155.05 KB])
Coordinate files for Biological unit (2vqi.pdb2.gz [157.4 KB])
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2019 Protein Data Bank Japan