Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6V1D
DownloadVisualize
BU of 6v1d by Molmil
Crystal structure of human trefoil factor 1
Descriptor: Trefoil factor 1
Authors:Jarva, M.A, Lingford, J.P, John, A, Scott, N.E, Goddard-Borger, E.D.
Deposit date:2019-11-20
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Trefoil factors share a lectin activity that defines their role in mucus.
Nat Commun, 11, 2020
6V1C
DownloadVisualize
BU of 6v1c by Molmil
Crystal structure of human trefoil factor 3 in complex with its cognate ligand
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-beta-D-galactopyranose, Trefoil factor 3
Authors:Jarva, M.A, Lingford, J.P, John, A, Scott, N.E, Goddard-Borger, E.D.
Deposit date:2019-11-20
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Trefoil factors share a lectin activity that defines their role in mucus.
Nat Commun, 11, 2020
6V4V
DownloadVisualize
BU of 6v4v by Molmil
The crystal structure of BonA from Acinetobacter baumannii
Descriptor: BON domain protein, ZINC ION
Authors:Grinter, R.
Deposit date:2019-12-02
Release date:2021-06-02
Last modified:2021-08-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:BonA from Acinetobacter baumannii Forms a Divisome-Localized Decamer That Supports Outer Envelope Function.
Mbio, 2021
6PLH
DownloadVisualize
BU of 6plh by Molmil
FAB fragment complexed with C-mannosylated tryptophan peptide
Descriptor: Fab 5G12 heavy chain, Fab 5G12 light chain, Interleukin-21 receptor, ...
Authors:John, A, Jarva, M.A, Goddard-Borger, E.D.
Deposit date:2019-06-30
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Yeast- and antibody-based tools for studying tryptophan C-mannosylation.
Nat.Chem.Biol., 17, 2021
7ZLG
DownloadVisualize
BU of 7zlg by Molmil
Cryo-EM structure of C-mannosyltransferase CeDPY19, in complex with acceptor peptide and bound to CMT2-Fab and anti-Fab nanobody
Descriptor: Anti-Fab nanobody, C-mannosyltransferase dpy-19, CMT2-Fab heavy chain, ...
Authors:Bloch, J.S, Mukherjee, S, Mao, R, Irobalieva, R, Kossiakoff, A.A, Goddard-Borger, E.D, Locher, K.P.
Deposit date:2022-04-15
Release date:2023-01-11
Last modified:2023-05-10
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase.
Nat.Chem.Biol., 19, 2023
7ZLH
DownloadVisualize
BU of 7zlh by Molmil
Cryo-EM structure of C-mannosyltransferase CeDPY19, in apo state, bound to CMT2-Fab and anti-Fab nanobody
Descriptor: Anti-Fab nanobody, C-mannosyltransferase dpy-19, CMT2-Fab heavy chain, ...
Authors:Bloch, J.S, Mukherjee, S, Irobalieva, R, Kossiakoff, A.A, Goddard-Borger, E.D, Locher, K.P.
Deposit date:2022-04-15
Release date:2023-01-11
Last modified:2023-05-10
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase.
Nat.Chem.Biol., 19, 2023
7ZLJ
DownloadVisualize
BU of 7zlj by Molmil
Cryo-EM structure of C-mannosyltransferase CeDPY19, in ternary complex with Dol25-P-C-Man and acceptor peptide, bound to CMT2-Fab and anti-Fab nanobody
Descriptor: Anti-Fab nanobody, C-mannosyltransferase dpy-19, CMT2-Fab heavy chain, ...
Authors:Bloch, J.S, Mao, R, Mukherjee, S, Boilevin, J, Irobalieva, R, Darbre, T, Reymond, J.L, Kossiakoff, A.A, Goddard-Borger, E.D, Locher, K.P.
Deposit date:2022-04-15
Release date:2023-01-11
Last modified:2023-05-10
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase.
Nat.Chem.Biol., 19, 2023
7ZLI
DownloadVisualize
BU of 7zli by Molmil
Cryo-EM structure of C-mannosyltransferase CeDPY19, in complex with Dol25-P-Man and bound to CMT2-Fab and anti-Fab nanobody
Descriptor: Anti-Fab nanobody, C-mannosyltransferase dpy-19, CMT2-Fab heavy chain, ...
Authors:Bloch, J.S, Mukherjee, S, Boilevin, J, Irobalieva, R, Darbre, T, Reymond, J.L, Kossiakoff, A.A, Goddard-Borger, E.D, Locher, K.P.
Deposit date:2022-04-15
Release date:2023-01-11
Last modified:2023-05-10
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase.
Nat.Chem.Biol., 19, 2023
7NBZ
DownloadVisualize
BU of 7nbz by Molmil
Crystal structure of ligand free open conformation of sulfoquinovosyl binding protein (SQBP) from Agrobacterium tumefaciens
Descriptor: ACETATE ION, Sulfoquinovosyl binding protein
Authors:Snow, A, Sharma, M, Davies, G.J.
Deposit date:2021-01-28
Release date:2022-01-19
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7OH2
DownloadVisualize
BU of 7oh2 by Molmil
Crystal structure of FMNH2-dependent monooxygenase for oxidative desulfurization of sulfoquinovose
Descriptor: Alkanesulfonate monooxygenase
Authors:Sharma, M, Davies, G.J.
Deposit date:2021-05-08
Release date:2022-01-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7OFX
DownloadVisualize
BU of 7ofx by Molmil
Crystal structure of a GH31 family sulfoquinovosidase mutant D455N from Agrobacterium tumefaciens in complex with sulfoquinovosyl glycerol (SQGro)
Descriptor: Alpha-glucosidase yihQ, [(2S,3S,4S,5R,6S)-6-[(2R)-2,3-bis(oxidanyl)propoxy]-3,4,5-tris(oxidanyl)oxan-2-yl]methanesulfonic acid
Authors:Sharma, M, Davies, G.J.
Deposit date:2021-05-05
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7OFY
DownloadVisualize
BU of 7ofy by Molmil
Crystal structure of SQ binding protein from Agrobacterium tumefaciens in complex with sulfoquinovosyl glycerol (SQGro)
Descriptor: 1,2-ETHANEDIOL, Sulfoquinovosyl binding protein, [(2S,3S,4S,5R,6S)-6-[(2R)-2,3-bis(oxidanyl)propoxy]-3,4,5-tris(oxidanyl)oxan-2-yl]methanesulfonic acid
Authors:Jarva, M.A, Sharma, M, Goddard-Borger, E.D, Davies, G.J.
Deposit date:2021-05-05
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7OLF
DownloadVisualize
BU of 7olf by Molmil
Crystal structure of FMNH2-dependent monooxygenase from Agrobacterium tumefaciens for oxidative desulfurization of sulfoquinovose
Descriptor: Methanesulfonate sulfonatase
Authors:Sharma, M, Davies, G.J.
Deposit date:2021-05-19
Release date:2022-02-02
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7LX5
DownloadVisualize
BU of 7lx5 by Molmil
The SARS-CoV-2 spike protein receptor binding domain bound to neutralizing nanobodies WNb 2 and WNb 10
Descriptor: Spike glycoprotein, WNb 10, WNb 2
Authors:Pymm, P, Glukhova, A, Tham, W.-H.
Deposit date:2021-03-03
Release date:2021-05-05
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Nanobody cocktails potently neutralize SARS-CoV-2 D614G N501Y variant and protect mice.
Proc.Natl.Acad.Sci.USA, 118, 2021
7LDJ
DownloadVisualize
BU of 7ldj by Molmil
SARS-CoV-2 receptor binding domain in complex with WNb-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody 2, ...
Authors:Pymm, P, Dietrich, M.H, Tan, L.L, Adair, A, Tham, W.H.
Deposit date:2021-01-13
Release date:2021-05-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:SARS-CoV-2 receptor binding domain in complex with WNb-2
Proc.Natl.Acad.Sci.USA, 2021
6CGI
DownloadVisualize
BU of 6cgi by Molmil
Structure of Salmonella Effector SseK3
Descriptor: Type III secretion system effector protein, URIDINE-5'-DIPHOSPHATE
Authors:Chung, I.Y.W, Cygler, M.
Deposit date:2018-02-20
Release date:2018-02-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Salmonella Effectors SseK1 and SseK3 Target Death Domain Proteins in the TNF and TRAIL Signaling Pathways.
Mol.Cell Proteomics, 18, 2019
7TZK
DownloadVisualize
BU of 7tzk by Molmil
EPS8 SH3 Domain with NleH1 PxxDY Motif
Descriptor: Epidermal growth factor receptor kinase substrate 8, T3SS secreted effector NleH homolog
Authors:Grishin, A.M, Cygler, M.
Deposit date:2022-02-15
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Targeting of microvillus protein Eps8 by the NleH effector kinases from enteropathogenic E. coli
Proc.Natl.Acad.Sci.USA, 119, 2022
6DUS
DownloadVisualize
BU of 6dus by Molmil
Structure of Salmonella Effector SseK3 E258Q mutant
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Chung, I.Y.W, Cygler, M.
Deposit date:2018-06-21
Release date:2018-07-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Salmonella Effectors SseK1 and SseK3 Target Death Domain Proteins in the TNF and TRAIL Signaling Pathways.
Mol.Cell Proteomics, 18, 2019
7BBZ
DownloadVisualize
BU of 7bbz by Molmil
Crystal structure of apo aldo-keto reductase from Agrobacterium tumefaciens
Descriptor: Aryl-alcohol dehydrogenase
Authors:Snow, A, Sharma, M, Davies, G.J.
Deposit date:2020-12-18
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7BC0
DownloadVisualize
BU of 7bc0 by Molmil
Crystal structure of aldo-keto reductase from Agrobacterium tumefaciens in a binary complex with NADPH
Descriptor: Aryl-alcohol dehydrogenase, PHOSPHATE ION
Authors:Snow, A, Sharma, M, Davies, G.J.
Deposit date:2020-12-18
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7BC1
DownloadVisualize
BU of 7bc1 by Molmil
Crystal structure of aldo-keto reductase from Agrobacterium tumefaciens in a ternary complex with NADPH and glucose
Descriptor: Aryl-alcohol dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, alpha-D-glucopyranose
Authors:Snow, A, Sharma, M, Davies, G.J.
Deposit date:2020-12-18
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7BBY
DownloadVisualize
BU of 7bby by Molmil
Crystal structure of aldo-keto reductase with C-terminal His tag from Agrobacterium tumefaciens
Descriptor: Aryl-alcohol dehydrogenase, PHOSPHATE ION
Authors:Snow, A, Sharma, M, Davies, G.J.
Deposit date:2020-12-18
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
5BO8
DownloadVisualize
BU of 5bo8 by Molmil
Structure of human sialyltransferase ST8SiaIII
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CITRIC ACID, ...
Authors:Volkers, G, Worrall, L, Strynadka, N.C.J.
Deposit date:2015-05-27
Release date:2015-07-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of human ST8SiaIII sialyltransferase provides insight into cell-surface polysialylation.
Nat.Struct.Mol.Biol., 22, 2015
5BO9
DownloadVisualize
BU of 5bo9 by Molmil
Structure of human sialyltransferase ST8SiaIII in complex with CMP-3FNeu5Ac and Sia-6S-LacNAc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Volkers, G, Worrall, L, Strynadka, N.C.J.
Deposit date:2015-05-27
Release date:2015-07-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of human ST8SiaIII sialyltransferase provides insight into cell-surface polysialylation.
Nat.Struct.Mol.Biol., 22, 2015
5BO6
DownloadVisualize
BU of 5bo6 by Molmil
Structure of human sialyltransferase ST8SiaIII in complex with CDP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Volkers, G, Worrall, L, Strynadka, N.C.J.
Deposit date:2015-05-27
Release date:2015-07-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structure of human ST8SiaIII sialyltransferase provides insight into cell-surface polysialylation.
Nat.Struct.Mol.Biol., 22, 2015

 

12>

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon