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7QA9
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10bp DNA/DNA duplex
分子名称: DNA (5'-D(*CP*CP*AP*TP*TP*AP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3')
著者Li, Q, Trajkovski, M, Fan, C, Chen, J, Zhou, Y, Lu, K, Li, H, Su, X, Xi, Z, Plavec, J, Zhou, C.
登録日2021-11-16
公開日2022-11-16
最終更新日2022-11-23
実験手法SOLUTION NMR
主引用文献4'-SCF 3 -Labeling Constitutes a Sensitive 19 F NMR Probe for Characterization of Interactions in the Minor Groove of DNA.
Angew.Chem.Int.Ed.Engl., 61, 2022
7NWD
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Three-quartet c-kit2 G-quadruplex stabilized by a pyrene conjugate
分子名称: POTASSIUM ION, c-kit2_py1
著者Peterkova, K, Durnik, I, Marek, R, Plavec, J, Podbevsek, P.
登録日2021-03-16
公開日2021-08-04
最終更新日2021-10-06
実験手法SOLUTION NMR
主引用文献c-kit2 G-quadruplex stabilized via a covalent probe: exploring G-quartet asymmetry.
Nucleic Acids Res., 49, 2021
6ZRM
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G-quadruplex with a G-A bulge
分子名称: DNA (5'-D(*TP*GP*GP*GP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*TP*GP*GP*G)-3')
著者Lenarcic Zivkovic, M, Plavec, J.
登録日2020-07-13
公開日2021-05-26
実験手法SOLUTION NMR
主引用文献Structure of a DNA G-Quadruplex Related to Osteoporosis with a G-A Bulge Forming a Pseudo-loop .
Molecules, 25, 2020
5OPH
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G-quadruplex structure of DNA oligonucleotide containing GGGGCC repeats linked to ALS and FTD
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
著者Brcic, J, Plavec, J.
登録日2017-08-09
公開日2018-08-29
最終更新日2019-06-19
実験手法SOLUTION NMR
主引用文献NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism.
Nucleic Acids Res., 46, 2018
1XV6
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BU of 1xv6 by Molmil
The solution structure of 2',5'-linked 3'-O-(2-methoxyethyl)-RNA hairpin
分子名称: 5'-R(*(C2L)P*(G2L)P*(C2L)P*(G2L)P*(A2L)P*(A2L)P*(U2L)P*(U2L)P*(C2L)P*(G2L)P*(C2L)P*(G2L))-2'
著者Plevnik, M, Gdaniec, Z, Plavec, J.
登録日2004-10-27
公開日2005-04-05
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex
Nucleic Acids Res., 33, 2005
1LVS
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THE SOLUTION STRUCTURE OF D(G4T4G3)2
分子名称: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*G)-3'
著者Crnugelj, M, Hud, N.V, Plavec, J.
登録日2002-05-29
公開日2002-07-24
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold.
J.Mol.Biol., 320, 2002
1U64
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The Solution Structure of d(G3T4G4)2
分子名称: 5'-D(*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'
著者Sket, P, Crnugelj, M, Plavec, J.
登録日2004-07-29
公開日2004-10-26
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献d(G3T4G4) forms unusual dimeric G-quadruplex structure with the same general fold in the presence of K+, Na+ or NH4+ ions.
Bioorg.Med.Chem., 12, 2004
8PMB
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Minimal I-motif comprising three cytosine-cytosine+ base-pairs
分子名称: minimal I-motif C21T333
著者Ghezzo, M, Trajkovski, M, Plavec, J, Sissi, C.
登録日2023-06-28
公開日2023-09-13
最終更新日2023-10-18
実験手法SOLUTION NMR
主引用文献A Screening Protocol for Exploring Loop Length Requirements for the Formation of a Three Cytosine-Cytosine + Base-Paired i-Motif.
Angew.Chem.Int.Ed.Engl., 62, 2023
7A3Y
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RNA duplex with a cytosine bulge in complex with berberine
分子名称: BERBERINE, RNA-A chain A, RNA-A chain B
著者Podbevsek, P, Plavec, J.
登録日2020-08-19
公開日2021-03-10
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Interaction between berberine and RNA for the exploration of phytochemicals role
Nucleic Acids Res., 2021
8Q5Q
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d(ATTTC)3 dimeric structure
分子名称: DNA (5'-D(*AP*TP*TP*TP*(DNR)P*AP*TP*TP*TP*CP*AP*TP*TP*TP*C)-3')
著者Trajkovski, M, Pastore, A, Plavec, J.
登録日2023-08-09
公開日2024-02-07
最終更新日2024-03-06
実験手法SOLUTION NMR
主引用文献Dimeric structures of DNA ATTTC repeats promoted by divalent cations.
Nucleic Acids Res., 52, 2024
6IA4
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Human telomeric G-quadruplex with 8-oxo-G substitution in the outer G-quartet
分子名称: hTel-oxoG21
著者Bielskute, S, Plavec, J, Podbevsek, P.
登録日2018-11-26
公開日2019-01-30
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Impact of Oxidative Lesions on the Human Telomeric G-Quadruplex.
J. Am. Chem. Soc., 141, 2019
6IA0
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Human telomeric G-quadruplex with 8-oxo-G substitution in the central G-quartet
分子名称: hTel-oxoG10
著者Bielskute, S, Plavec, J, Podbevsek, P.
登録日2018-11-26
公開日2019-01-30
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Impact of Oxidative Lesions on the Human Telomeric G-Quadruplex.
J. Am. Chem. Soc., 141, 2019
7W0V
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C4'-SCF3-DT modifeid DNA-DNA duplex
分子名称: DNA (5'-D(*CP*CP*AP*TP*(DSW)P*AP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3')
著者Li, Q, Trajkovski, M, Fan, C, Chen, J, Zhou, Y, Lu, K, Li, H, Su, X, Xi, Z, Plavec, J, Zhou, C.
登録日2021-11-18
公開日2022-11-16
最終更新日2022-11-30
実験手法SOLUTION NMR
主引用文献4'-SCF 3 -Labeling Constitutes a Sensitive 19 F NMR Probe for Characterization of Interactions in the Minor Groove of DNA.
Angew.Chem.Int.Ed.Engl., 61, 2022
6GIR
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Arabidopsis thaliana cytosolic seryl-tRNA synthetase
分子名称: Serine--tRNA ligase, cytoplasmic
著者Kekez, I, Kekez, M, Rokov-Plavec, J, Matkovic-Calogovic, D.
登録日2018-05-15
公開日2019-01-02
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.343 Å)
主引用文献Arabidopsis seryl-tRNA synthetase: the first crystal structure and novel protein interactor of plant aminoacyl-tRNA synthetase.
FEBS J., 286, 2019
6ZX7
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Antiparallel basket-type G-quadruplex DNA structure formed in human Bcl-2 promoter
分子名称: bcl2ex
著者Bielskute, S, Plavec, J, Podbevsek, P.
登録日2020-07-29
公開日2021-03-10
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Oxidative lesions modulate G-quadruplex stability and structure in the human BCL2 promoter.
Nucleic Acids Res., 49, 2021
6ZX6
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Antiparallel basket-type G-quadruplex DNA structure formed in human Bcl-2 promoter containing 8-oxoG
分子名称: bcl2ex-oxoG19
著者Bielskute, S, Plavec, J, Podbevsek, P.
登録日2020-07-29
公開日2021-03-10
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Oxidative lesions modulate G-quadruplex stability and structure in the human BCL2 promoter.
Nucleic Acids Res., 49, 2021
6GZN
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Adenine-driven structural switch from two- to three-quartet DNA G-quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*AP*GP*GP*G)-3')
著者Lenarcic Zivkovic, M, Rozman, J, Plavec, J.
登録日2018-07-04
公開日2018-09-26
最終更新日2019-05-08
実験手法SOLUTION NMR
主引用文献Adenine-Driven Structural Switch from a Two- to Three-Quartet DNA G-Quadruplex.
Angew. Chem. Int. Ed. Engl., 57, 2018
6R8E
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SC14 G-hairpin
分子名称: DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3')
著者Lenarcic Zivkovic, M, Trantirek, L, Plavec, J.
登録日2019-04-01
公開日2021-02-03
最終更新日2021-08-18
実験手法SOLUTION NMR
主引用文献Insight into formation propensity of pseudocircular DNA G-hairpins.
Nucleic Acids Res., 49, 2021
7Z9L
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Phen-DC3 intercalation causes hybrid-to-antiparallel transformation of human telomeric DNA G-quadruplex
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N2,N9-bis(1-methylquinolin-3-yl)-1,10-phenanthroline-2,9-dicarboxamide
著者Ghosh, A, Trajkovski, M, Teulade-Fichou, M.P, Gabelica, V, Plavec, J.
登録日2022-03-21
公開日2022-08-31
最終更新日2022-10-05
実験手法SOLUTION NMR
主引用文献Phen-DC 3 Induces Refolding of Human Telomeric DNA into a Chair-Type Antiparallel G-Quadruplex through Ligand Intercalation.
Angew.Chem.Int.Ed.Engl., 61, 2022
2N2D
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Structure of DNA G-quadruplex adopted by ALS and FTD related GGGGCC repeat with G21 to Br-G21 substitution
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
著者Brcic, J, Plavec, J.
登録日2015-05-06
公開日2015-09-23
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution structure of a DNA quadruplex containing ALS and FTD related GGGGCC repeat stabilized by 8-bromodeoxyguanosine substitution.
Nucleic Acids Res., 43, 2015
8JIH
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human telomere two-quartet G-quadruplex at pH 5.0
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
著者Wang, B, Galer, P, Plavec, J.
登録日2023-05-26
公開日2024-04-03
実験手法SOLUTION NMR
主引用文献Unveiling the structural mechanism of a G-quadruplex pH-Driven switch
Biochimie, 214, 2023
8JIC
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human telomere two-quartet G-quadruplex at pH 7.0
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
著者Wang, B, Galer, P, Plavec, J.
登録日2023-05-26
公開日2024-04-03
実験手法SOLUTION NMR
主引用文献Unveiling the structural mechanism of a G-quadruplex pH-Driven switch
Biochimie, 214, 2023
8C7B
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Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
著者Wang, B, Zalar, M, Plavec, J, Sket, P.
登録日2023-01-14
公開日2023-11-22
実験手法SOLUTION NMR
主引用文献Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
8C7A
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Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
著者Wang, B, Zalar, M, Plavec, J, Sket, P.
登録日2023-01-14
公開日2023-11-22
実験手法SOLUTION NMR
主引用文献Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
6FNV
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Solution structure of mule deer prion protein with polymorphism S138
分子名称: Major prion protein
著者Slapsak, U, Ilc, G, Plavec, J.
登録日2018-02-05
公開日2019-08-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution structure of mule deer prion protein with polymorphism S138
To Be Published

 

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