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8C5U
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BU of 8c5u by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 8-mer RNA, pppGpGpUpApApApUpG (IC8)
Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
Deposit date:2023-01-10
Release date:2023-08-30
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
8C5S
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BU of 8c5s by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 7-mer RNA, pppGpGpUpApApApU (IC7)
Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
Deposit date:2023-01-10
Release date:2023-08-30
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
8Q63
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BU of 8q63 by Molmil
Cryo-EM structure of IC8', a second state of yeast mitochondrial RNA polymerase transcription initiation complex with 8-mer RNA, pppGpGpUpApApApUpG
Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
Deposit date:2023-08-10
Release date:2023-08-30
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.68 Å)
Cite:Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
8AP1
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BU of 8ap1 by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with two GTP molecules poised for de novo initiation (IC2)
Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
Deposit date:2022-08-09
Release date:2023-08-23
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
8ATV
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BU of 8atv by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 5-mer RNA, pppGpGpApApA (IC5)
Descriptor: DNA (36-MER), DNA-directed RNA polymerase, mitochondrial, ...
Authors:Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
Deposit date:2022-08-24
Release date:2023-08-30
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
8ATT
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BU of 8att by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 4-mer RNA, pppGpGpUpA (IC4)
Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
Deposit date:2022-08-24
Release date:2023-08-30
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
8ATW
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BU of 8atw by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 6-mer RNA, pppGpGpApApApU (IC6)
Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
Deposit date:2022-08-24
Release date:2023-08-30
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
6YMV
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BU of 6ymv by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase partially-melted transcription initiation complex (PmIC)
Descriptor: DNA (33-MER) NON-TEMPLATE, DNA (33-MER) template, DNA-directed RNA polymerase, ...
Authors:Das, K, Patel, S.S.
Deposit date:2020-04-10
Release date:2020-12-02
Last modified:2023-10-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM Structures Reveal Transcription Initiation Steps by Yeast Mitochondrial RNA Polymerase.
Mol.Cell, 81, 2021
6YMW
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BU of 6ymw by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex
Descriptor: Chains: N, Chains: T, DNA-directed RNA polymerase, ...
Authors:Das, K, Patel, S.S.
Deposit date:2020-04-10
Release date:2020-12-09
Last modified:2023-10-18
Method:ELECTRON MICROSCOPY (3.71 Å)
Cite:Cryo-EM Structures Reveal Transcription Initiation Steps by Yeast Mitochondrial RNA Polymerase.
Mol.Cell, 81, 2021
4ZTU
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BU of 4ztu by Molmil
Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (25-MER), DNA (5'-D(P*AP*AP*GP*AP*CP*GP*AP*GP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*GP*TP*AP*C)-3'), ...
Authors:Szymanski, M.R, Kuznestov, V.B, Shumate, C.K, Meng, Q, Lee, Y.-S, Patel, G, Patel, S.S, Yin, Y.W.
Deposit date:2015-05-15
Release date:2015-09-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.299 Å)
Cite:Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase
EMBO J., 34, 2015
5E3H
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BU of 5e3h by Molmil
Structural Basis for RNA Recognition and Activation of RIG-I
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, GLYCEROL, ...
Authors:Jiang, F, Miller, M.T, Marcotrigiano, J.
Deposit date:2015-10-02
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of RNA recognition and activation by innate immune receptor RIG-I.
Nature, 479, 2011
5F98
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BU of 5f98 by Molmil
Crystal structure of RIG-I in complex with Cap-0 RNA
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable ATP-dependent RNA helicase DDX58, ...
Authors:Wang, C, Marcotrigiano, J, Miller, M, Jiang, F.
Deposit date:2015-12-09
Release date:2016-01-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.28 Å)
Cite:Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I.
Proc.Natl.Acad.Sci.USA, 113, 2016
5F9F
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BU of 5f9f by Molmil
Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA
Descriptor: (R,R)-2,3-BUTANEDIOL, MAGNESIUM ION, Probable ATP-dependent RNA helicase DDX58, ...
Authors:Wang, C, Marcotrigiano, J, Miller, M.T, Jiang, F.
Deposit date:2015-12-09
Release date:2016-01-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I.
Proc.Natl.Acad.Sci.USA, 113, 2016
5F9H
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BU of 5f9h by Molmil
Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Probable ATP-dependent RNA helicase DDX58, ...
Authors:Wang, C, Marcotrigiano, J, Miller, M, Jiang, F.
Deposit date:2015-12-09
Release date:2016-01-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I.
Proc.Natl.Acad.Sci.USA, 113, 2016
4ZTZ
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BU of 4ztz by Molmil
Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (25-MER), DNA (5'-D(P*AP*AP*GP*AP*CP*GP*AP*GP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*GP*TP*AP*C)-3'), ...
Authors:Szymanski, M.R, Yin, Y.W.
Deposit date:2015-05-15
Release date:2015-09-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.442 Å)
Cite:Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase
EMBO J., 34, 2015
2PL9
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BU of 2pl9 by Molmil
Crystal Structure of CheY-Mg(2+)-BeF(3)(-) in Complex with CheZ(C19) Peptide solved from a P2(1)2(1)2 Crystal
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BERYLLIUM TRIFLUORIDE ION, Chemotaxis protein cheY, ...
Authors:Guhaniyogi, J, Stock, A.M.
Deposit date:2007-04-19
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Interaction of CheY with the C-terminal peptide of CheZ.
J.Bacteriol., 190, 2008
2PMC
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BU of 2pmc by Molmil
Crystal Structure of CheY-Mg(2+) in Complex with CheZ(C15) Peptide solved from a P1 Crystal
Descriptor: Chemotaxis protein cheY, Chemotaxis protein cheZ, MAGNESIUM ION
Authors:Guhaniyogi, J, Stock, A.M.
Deposit date:2007-04-20
Release date:2008-01-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.688 Å)
Cite:Interaction of CheY with the C-terminal peptide of CheZ.
J.Bacteriol., 190, 2008

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PDB entries from 2024-11-13

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