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8OFC
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BU of 8ofc by Molmil
Structure of an i-motif domain with the cytosine analog 1,3-diaza-2-oxophenoxacione (tC) at neutral pH
Descriptor: DNA (5'-D(*CP*(YCO)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*(DNR)P*GP*T)-3')
Authors:Mir, B, Serrano-Chacon, I, Terrazas, M, Gandioso, A, Garavis, M, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2023-03-15
Release date:2024-02-07
Last modified:2024-04-24
Method:SOLUTION NMR
Cite:Site-specific incorporation of a fluorescent nucleobase analog enhances i-motif stability and allows monitoring of i-motif folding inside cells.
Nucleic Acids Res., 52, 2024
5NIP
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BU of 5nip by Molmil
An i-motif containing the neutral cytidine protonated analogue pseudoisocytidine
Descriptor: DNA (5'-D(*TP*(DCP)P*CP*GP*TP*TP*TP*CP*(PSC)P*GP*T)-3')
Authors:Mir, B, Soles, X, Gonzalez, C, Escaja, N.
Deposit date:2017-03-24
Release date:2017-06-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The effect of the neutral cytidine protonated analogue pseudoisocytidine on the stability of i-motif structures.
Sci Rep, 7, 2017
5OGA
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BU of 5oga by Molmil
Structure of minimal i-motif domain
Descriptor: DNA (5'-D(*TP*(DCP)P*GP*TP*TP*CP*(DCP)P*GP*TP*TP*TP*TP*TP*CP*GP*TP*TP*CP*CP*GP*T)-3')
Authors:Mir, B, Serrano, I, Buitrago, D, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2017-07-12
Release date:2017-11-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Prevalent Sequences in the Human Genome Can Form Mini i-Motif Structures at Physiological pH.
J. Am. Chem. Soc., 139, 2017
7O5E
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BU of 7o5e by Molmil
The structure of an i-motif/duplex junction at neutral pH
Descriptor: I-motif/duplex junction (IDJ)
Authors:Serrano-Chacon, I, Mir, B, Escaja, N, Gonzalez, C.
Deposit date:2021-04-08
Release date:2021-09-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of i-Motif/Duplex Junctions at Neutral pH.
J.Am.Chem.Soc., 143, 2021
8BV6
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BU of 8bv6 by Molmil
An i-motif domain able to undergo pH-dependent conformational transitions (neutral structure)
Descriptor: DNA (5'-D(*CP*(DNR)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*CP*GP*T)-3')
Authors:Serrano-Chacon, I, Mir, B, Cupellini, L, Colizzi, F, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2022-12-01
Release date:2023-02-22
Method:SOLUTION NMR
Cite:pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.
J.Am.Chem.Soc., 145, 2023
8BQY
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BU of 8bqy by Molmil
An i-motif domain able to undergo pH-dependent conformational transitions (acidic structure)
Descriptor: DNA (5'-D(*CP*(DNR)P*GP*TP*TP*(DNR)P*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*(DNR)P*CP*GP*T)-3')
Authors:Serrano-Chacon, I, Mir, B, Cupellini, L, Colizzi, F, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2022-11-22
Release date:2023-02-22
Method:SOLUTION NMR
Cite:pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.
J.Am.Chem.Soc., 145, 2023

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PDB entries from 2024-06-12

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