Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5FNA
DownloadVisualize
BU of 5fna by Molmil
Cryo-EM reconstruction of caspase-1 CARD
分子名称: Caspase-1
著者Li, Y, Lu, A, Schmidt, F.I, Yin, Q, Chen, S, Fu, T.M, Tong, A.B, Ploegh, H.L, Mao, Y, Wu, H.
登録日2015-11-11
公開日2016-03-30
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Molecular Basis of Caspase-1 Polymerization and its Inhibition by a Novel Capping Mechanism
Nat.Struct.Mol.Biol., 23, 2016
8EFN
DownloadVisualize
BU of 8efn by Molmil
Structure of Sp-STING3 from Stylophora pistillata coral in complex with 3',3'-cGAMP
分子名称: 1,2-ETHANEDIOL, 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, Stimulator of interferon genes protein
著者Li, Y, Slavik, K.M, Morehouse, B.R, Mears, K, Kranzusch, P.J.
登録日2022-09-08
公開日2023-07-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献cGLRs are a diverse family of pattern recognition receptors in innate immunity.
Cell, 186, 2023
8EFM
DownloadVisualize
BU of 8efm by Molmil
Structure of coral STING receptor from Stylophora pistillata in complex with 2',3'-cGAMP
分子名称: SULFATE ION, Stimulator of interferon genes protein, cGAMP
著者Li, Y, Slavik, K.M, Morehouse, B.R, Mears, K, Kranzusch, P.J.
登録日2022-09-08
公開日2023-07-05
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献cGLRs are a diverse family of pattern recognition receptors in innate immunity.
Cell, 186, 2023
2KTQ
DownloadVisualize
BU of 2ktq by Molmil
OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), ...
著者Li, Y, Waksman, G.
登録日1998-07-30
公開日1999-01-13
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998
2LS1
DownloadVisualize
BU of 2ls1 by Molmil
Structure of Sviceucin, an antibacterial type I lasso peptide from Streptomyces sviceus
分子名称: Uncharacterized protein
著者Li, Y, Ducasse, R, Blond, A, Zirah, S, Goulard, C, Lescop, E, Guittet, E, Pernodet, J, Rebuffat, S.
登録日2012-04-18
公開日2012-08-15
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure and biosynthesis of Sviceucin, an antibacterial type I lasso peptide from Streptomyces sviceus
To be Published
2MM4
DownloadVisualize
BU of 2mm4 by Molmil
Structure of a Conserved Golgi Complex-targeting Signal in Coronavirus Envelope Proteins
分子名称: Envelope small membrane protein
著者Li, Y, Surya, W, Claudine, S, Torres, J.
登録日2014-03-09
公開日2014-04-02
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of a conserved Golgi complex-targeting signal in coronavirus envelope proteins.
J.Biol.Chem., 289, 2014
2NB7
DownloadVisualize
BU of 2nb7 by Molmil
Solution structure of N-terminal extramembrane domain of SH protein
分子名称: Small hydrophobic protein
著者Li, Y, To, J, Surya, W, Torres, J.
登録日2016-01-26
公開日2016-02-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Inhibition of the human respiratory syncytial virus small hydrophobic protein and structural variations in a bicelle environment.
J.Virol., 88, 2014
2NB8
DownloadVisualize
BU of 2nb8 by Molmil
Solution structure of C-terminal extramembrane domain of SH protein
分子名称: Small hydrophobic protein
著者Li, Y, To, J, Surya, W, Torres, J.
登録日2016-01-26
公開日2016-02-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Inhibition of the human respiratory syncytial virus small hydrophobic protein and structural variations in a bicelle environment.
J.Virol., 88, 2014
6KXS
DownloadVisualize
BU of 6kxs by Molmil
Cryo-EM structure of human IgM-Fc in complex with the J chain and the ectodomain of pIgR
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin J chain, ...
著者Li, Y, Wang, G, Xiao, J.
登録日2019-09-12
公開日2020-02-05
最終更新日2021-12-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural insights into immunoglobulin M.
Science, 367, 2020
5VZT
DownloadVisualize
BU of 5vzt by Molmil
Crystal structure of the Skp1-FBXO31 complex
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, F-box only protein 31, PHOSPHATE ION, ...
著者Li, Y, Jin, K, Hao, B.
登録日2017-05-29
公開日2018-01-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis of the phosphorylation-independent recognition of cyclin D1 by the SCFFBXO31 ubiquitin ligase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VZU
DownloadVisualize
BU of 5vzu by Molmil
Crystal structure of the Skp1-FBXO31-cyclin D1 complex
分子名称: Cyclin D1, F-box only protein 31, PHOSPHATE ION, ...
著者Li, Y, Jin, K, Hao, B.
登録日2017-05-29
公開日2018-01-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis of the phosphorylation-independent recognition of cyclin D1 by the SCFFBXO31 ubiquitin ligase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3C0F
DownloadVisualize
BU of 3c0f by Molmil
Crystal Structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source
分子名称: Uncharacterized protein AF_1514
著者Li, Y, Bahti, P, Shaw, N, Song, G, Yin, J, Zhu, J.-Y, Zhang, H, Xu, H, Wang, B.-C, Liu, Z.-J.
登録日2008-01-20
公開日2008-02-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source.
Proteins, 71, 2008
3PV6
DownloadVisualize
BU of 3pv6 by Molmil
Crystal structure of NKp30 bound to its ligand B7-H6
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ig-like domain-containing protein DKFZp686O24166/DKFZp686I21167, ...
著者Li, Y.
登録日2010-12-06
公開日2011-03-16
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the activating natural killer cell receptor NKp30 bound to its ligand B7-H6 reveals basis for tumor cell recognition in humans
to be published
3PV7
DownloadVisualize
BU of 3pv7 by Molmil
Crystal structure of NKp30 ligand B7-H6
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ig-like domain-containing protein DKFZp686O24166/DKFZp686I21167
著者Li, Y.
登録日2010-12-06
公開日2011-03-16
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the activating natural killer cell receptor NKp30 bound to its ligand B7-H6 reveals basis for tumor cell recognition in humans
to be published
3Q98
DownloadVisualize
BU of 3q98 by Molmil
Structure of ygeW encoded protein from E. coli
分子名称: transcarbamylase
著者Li, Y, Jing, Z, Yu, X, Allewell, N.M, Tuchman, M, Shi, D.
登録日2011-01-07
公開日2011-05-04
最終更新日2018-06-06
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献The ygeW encoded protein from Escherichia coli is a knotted ancestral catabolic transcarbamylase.
Proteins, 79, 2011
2FJ2
DownloadVisualize
BU of 2fj2 by Molmil
Crystal Structure of Viral Macrophage Inflammatory Protein-II
分子名称: Viral macrophage inflammatory protein-II
著者Li, Y, Liu, D, Cao, R, Kumar, S, Dong, C.Z, wilson, S.R, Gao, Y.G, Huang, Z.
登録日2005-12-30
公開日2006-12-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of chemically synthesized vMIP-II.
Proteins, 67, 2007
2FHT
DownloadVisualize
BU of 2fht by Molmil
Crystal Structure of Viral Macrophage Inflammatory Protein-II
分子名称: Viral macrophage inflammatory protein-II
著者Li, Y, Liu, D, Cao, R, Kumar, S, Dong, C.Z, wilson, S.R, Gao, Y.G, Huang, Z.
登録日2005-12-27
公開日2006-12-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of chemically synthesized vMIP-II.
Proteins, 67, 2007
2FAT
DownloadVisualize
BU of 2fat by Molmil
An anti-urokinase plasminogen activator receptor (UPAR) antibody: Crystal structure and binding epitope
分子名称: FAB ATN-615, heavy chain, light chain
著者Li, Y, Parry, G, Shi, X, Chen, L, Callahan, J.A, Mazar, A.P, Huang, M.
登録日2005-12-07
公開日2006-11-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献An anti-urokinase plasminogen activator receptor (uPAR) antibody: crystal structure and binding epitope
J.Mol.Biol., 365, 2007
2HQ4
DownloadVisualize
BU of 2hq4 by Molmil
Crystal Structure of ORF 1580 a hypothetical protein from Pyrococcus horikoshii
分子名称: Hypothetical protein PH1570
著者Li, Y, Marshall, M, Chang, J, Zhao, M, Zhang, M, Xu, H, Liu, Z.J, Rose, J.P, Wang, B.C, Southeast Collaboratory for Structural Genomics, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2006-07-18
公開日2006-09-19
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Crystal Structure of ORF 1580 a hypothetical protein from Pyrococcus horikoshii
To be Published
8GZ1
DownloadVisualize
BU of 8gz1 by Molmil
Cryo-EM structure of human NaV1.6/beta1/beta2,apo state
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, Sodium channel protein type 8 subunit alpha, ...
著者Li, Y, Jiang, D.
登録日2022-09-24
公開日2023-03-08
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of human Na V 1.6 channel reveals Na + selectivity and pore blockade by 4,9-anhydro-tetrodotoxin.
Nat Commun, 14, 2023
8GZ2
DownloadVisualize
BU of 8gz2 by Molmil
Cryo-EM structure of human NaV1.6/beta1/beta2-4,9-anhydro-tetrodotoxin
分子名称: (1R,2S,3S,4R,5R,9S,11S,12S,14R)-7-amino-2,4,12-trihydroxy-2-(hydroxymethyl)-10,13,15-trioxa-6,8-diazapentacyclo[7.4.1.1~3,12~.0~5,11~.0~5,14~]pentadec-7-en-8-ium (non-preferred name), 2-acetamido-2-deoxy-beta-D-glucopyranose, Sodium channel protein type 8 subunit alpha, ...
著者Li, Y, Jiang, D.
登録日2022-09-24
公開日2023-03-08
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure of human Na V 1.6 channel reveals Na + selectivity and pore blockade by 4,9-anhydro-tetrodotoxin.
Nat Commun, 14, 2023
3IWP
DownloadVisualize
BU of 3iwp by Molmil
Crystal structure of human copper homeostasis protein CutC
分子名称: Copper homeostasis protein cutC homolog
著者Li, Y, Du, J, Zhang, P, Ding, J.
登録日2009-09-03
公開日2009-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of human copper homeostasis protein CutC reveals a potential copper-binding site
To be Published
3IBP
DownloadVisualize
BU of 3ibp by Molmil
The Crystal Structure of the Dimerization Domain of Escherichia coli Structural Maintenance of Chromosomes Protein MukB
分子名称: AMMONIUM ION, Chromosome partition protein mukB
著者Li, Y, Schoeffler, A.J, Berger, J.M, Oakley, M.G.
登録日2009-07-16
公開日2010-01-26
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (3.099 Å)
主引用文献The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB.
J.Mol.Biol., 395, 2010
3L2O
DownloadVisualize
BU of 3l2o by Molmil
Structure-Based Mechanism of Dimerization-Dependent Ubiquitination by the SCFFbx4 Ubiquitin Ligase
分子名称: F-box only protein 4, S-phase kinase-associated protein 1
著者Li, Y, Hao, B.
登録日2009-12-15
公開日2010-02-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis of dimerization-dependent ubiquitination by the SCF(Fbx4) ubiquitin ligase.
J.Biol.Chem., 285, 2010
3KTQ
DownloadVisualize
BU of 3ktq by Molmil
CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), ...
著者Li, Y, Waksman, G.
登録日1998-07-28
公開日1999-01-13
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998

219869

件を2024-05-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon