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3UE1
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BU of 3ue1 by Molmil
Crystal strucuture of Acinetobacter baumanni PBP1A in complex with MC-1
Descriptor: (4S,7Z)-7-(2-amino-1,3-thiazol-4-yl)-1-[({4-[(2R)-2,3-dihydroxypropyl]-3-(4,5-dihydroxypyridin-2-yl)-5-oxo-4,5-dihydro- 1H-1,2,4-triazol-1-yl}sulfonyl)amino]-4-formyl-10,10-dimethyl-1,6-dioxo-9-oxa-2,5,8-triazaundec-7-en-11-oate, Penicillin-binding protein 1a
Authors:Han, S.
Deposit date:2011-10-28
Release date:2011-12-14
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Distinctive attributes of beta-lactam target proteins in Acinetobacter baumannii relevant to development of new antibiotics
J.Am.Chem.Soc., 133, 2011
3UE0
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BU of 3ue0 by Molmil
Crystal structure of Acinetobacter baumannii PBP1a in complex with Aztreonam
Descriptor: 2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid, Penicillin-binding protein 1a
Authors:Han, S.
Deposit date:2011-10-28
Release date:2011-12-14
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Distinctive attributes of beta-lactam target proteins in Acinetobacter baumannii relevant to development of new antibiotics
J.Am.Chem.Soc., 133, 2011
3UDX
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BU of 3udx by Molmil
Crystal structure of Acinetobacter baumannii PBP1a in complex with Imipenem
Descriptor: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carboxylic acid, Penicillin-binding protein 1a
Authors:Han, S.
Deposit date:2011-10-28
Release date:2011-12-14
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Distinctive attributes of beta-lactam target proteins in Acinetobacter baumannii relevant to development of new antibiotics
J.Am.Chem.Soc., 133, 2011
3VKA
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BU of 3vka by Molmil
Crystal structure of MoeO5 soaked for 3 hours in FsPP
Descriptor: (2R)-3-(phosphonooxy)-2-{[(2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]oxy}propanoic acid, MAGNESIUM ION, MoeO5
Authors:Ren, F, Ko, T.-P, Huang, C.-H, Guo, R.-T.
Deposit date:2011-11-11
Release date:2012-05-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Insights into the mechanism of the antibiotic-synthesizing enzyme MoeO5 from crystal structures of different complexes
Angew.Chem.Int.Ed.Engl., 51, 2012
6W74
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BU of 6w74 by Molmil
Structure of cIAP with compound 15
Descriptor: 14-{[(3S)-2-(N-methyl-L-alanyl-3-methyl-L-valyl)-3-{[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]carbamoyl}-1,2,3,4-tetrahydroisoquinolin-7-yl]oxy}-3,6,9,12-tetraoxatetradecan-1-yl (3R)-3-{5-amino-4-carbamoyl-3-[4-(2,4-difluorophenoxy)phenyl]-1H-pyrazol-1-yl}piperidine-1-carboxylate, Baculoviral IAP repeat-containing protein 2, ZINC ION
Authors:Calabrese, M.F, Schiemer, J.S.
Deposit date:2020-03-18
Release date:2020-11-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural Characterization of BTK:PROTAC:cIAP Ternary Complexes: From Snapshots to Ensembles
Nat.Chem.Biol., 2020
6W7O
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BU of 6w7o by Molmil
Ternary complex structure - BTK cIAP compound 17
Descriptor: Baculoviral IAP repeat-containing protein 2, Tyrosine-protein kinase BTK, ZINC ION, ...
Authors:Calabrese, M.F, Schiemer, J.S.
Deposit date:2020-03-19
Release date:2020-11-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structural Characterization of BTK:PROTAC:cIAP Ternary Complexes: From Snapshots to Ensembles
Nat.Chem.Biol., 2020
6WB9
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BU of 6wb9 by Molmil
Structure of the S. cerevisiae ER membrane complex
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, ER membrane protein complex subunit 1, ...
Authors:Bai, L, Li, H.
Deposit date:2020-03-26
Release date:2020-06-03
Last modified:2020-09-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the ER membrane complex, a transmembrane-domain insertase.
Nature, 584, 2020
6W8I
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BU of 6w8i by Molmil
Ternary complex structure - BTK cIAP compound 15
Descriptor: 14-{[(3S)-2-(N-methyl-L-alanyl-3-methyl-L-valyl)-3-{[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]carbamoyl}-1,2,3,4-tetrahydroisoquinolin-7-yl]oxy}-3,6,9,12-tetraoxatetradecan-1-yl (3R)-3-{5-amino-4-carbamoyl-3-[4-(2,4-difluorophenoxy)phenyl]-1H-pyrazol-1-yl}piperidine-1-carboxylate, Baculoviral IAP repeat-containing protein 2, Tyrosine-protein kinase BTK, ...
Authors:Calabrese, M.F, Schiemer, J.S.
Deposit date:2020-03-20
Release date:2020-11-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structural Characterization of BTK:PROTAC:cIAP Ternary Complexes: From Snapshots to Ensembles
Nat.Chem.Biol., 2020
2N7E
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BU of 2n7e by Molmil
Solution structure of the UBL domain of yeast Ddi1
Descriptor: DNA damage-inducible protein 1
Authors:Siva, M, Grantz Saskova, K, Veverka, V.
Deposit date:2015-09-09
Release date:2016-07-20
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural studies of the yeast DNA damage-inducible protein Ddi1 reveal domain architecture of this eukaryotic protein family.
Sci Rep, 6, 2016
4HOW
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BU of 4how by Molmil
The crystal structure of isomaltulose synthase from Erwinia rhapontici NX5
Descriptor: CALCIUM ION, GLYCEROL, Sucrose isomerase
Authors:Xu, Z, Li, S, Xu, H, Zhou, J.
Deposit date:2012-10-22
Release date:2013-10-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Structural Basis of Erwinia rhapontici Isomaltulose Synthase
Plos One, 8, 2013
4HPH
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BU of 4hph by Molmil
The crystal structure of isomaltulose synthase mutant E295Q from Erwinia rhapontici NX5 in complex with its natural substrate sucrose
Descriptor: CALCIUM ION, GLYCEROL, Sucrose isomerase, ...
Authors:Xu, Z, Li, S, Xu, H, Zhou, J.
Deposit date:2012-10-23
Release date:2013-10-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Structural Basis of Erwinia rhapontici Isomaltulose Synthase
Plos One, 8, 2013
4FGY
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BU of 4fgy by Molmil
Identification of a unique PPAR ligand with an unexpected binding mode and antibetic activity
Descriptor: (4R,6S,8S,12R,14R,16Z,18R,19R,20S,21S)-19,21-dihydroxy-22-{(2S,2'R,5S,5'S)-5'-[(1R)-1-hydroxyethyl]-2,5'-dimethyloctahydro-2,2'-bifuran-5-yl}-4,6,8,12,14,18,20-heptamethyl-9,11-dioxodocos-16-enoic acid, Nuclear receptor coactivator 1, Peroxisome proliferator-activated receptor gamma
Authors:Wang, R, Li, Y.
Deposit date:2012-06-05
Release date:2013-03-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Identification of the antibiotic ionomycin as an unexpected peroxisome proliferator-activated receptor Gamma (PPAR-gamma) ligand with a unique binding mode and effective glucose-lowering activity in a mouse model of diabetes.
Diabetologia, 56, 2013
4HOZ
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BU of 4hoz by Molmil
The crystal structure of isomaltulose synthase mutant D241A from Erwinia rhapontici NX5 in complex with D-glucose
Descriptor: CALCIUM ION, GLYCEROL, Sucrose isomerase, ...
Authors:Xu, Z, Li, S, Xu, H, Zhou, J.
Deposit date:2012-10-23
Release date:2013-10-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Structural Basis of Erwinia rhapontici Isomaltulose Synthase
Plos One, 8, 2013
6IH0
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BU of 6ih0 by Molmil
Aquifex aeolicus LpxC complex with ACHN-975
Descriptor: N-[(2S)-3-azanyl-3-methyl-1-(oxidanylamino)-1-oxidanylidene-butan-2-yl]-4-[4-[(1R,2R)-2-(hydroxymethyl)cyclopropyl]buta -1,3-diynyl]benzamide, UDP-3-O-acyl-N-acetylglucosamine deacetylase, ZINC ION, ...
Authors:Li, D.Y, Fan, S, Jin, Y.Y, Zhang, C, Lv, G.X, Wu, G.T, Yang, Z.Y.
Deposit date:2018-09-27
Release date:2019-01-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:The Complex Structure of Protein AaLpxC from Aquifex aeolicus with ACHN-975 Molecule Suggests an Inhibitory Mechanism at Atomic-Level against Gram-Negative Bacteria
Molecules, 26, 2021
7YOT
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BU of 7yot by Molmil
Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus
Descriptor: NDV P protein, RNA-directed RNA polymerase L
Authors:Chen, Y, Jingyuan, C.
Deposit date:2022-08-02
Release date:2023-02-15
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein.
Nat Commun, 14, 2023
7YOU
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BU of 7you by Molmil
Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus
Descriptor: NDV P protein, RNA-directed RNA polymerase L
Authors:Chen, Y, Jingyuan, C, Xiaoying, F.
Deposit date:2022-08-02
Release date:2023-02-15
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein.
Nat Commun, 14, 2023
7YOV
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BU of 7yov by Molmil
Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus
Descriptor: NDV P protein, RNA-directed RNA polymerase L
Authors:Chen, Y, Jingyuan, C, Xiaoying, F.
Deposit date:2022-08-02
Release date:2023-02-15
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein.
Nat Commun, 14, 2023
7D1L
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BU of 7d1l by Molmil
complex structure of two RRM domains
Descriptor: Embryonic developmental protein tofu-6, Uncharacterized protein
Authors:Wang, X, Liao, S, Xu, C.
Deposit date:2020-09-14
Release date:2021-08-25
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Molecular basis for PICS-mediated piRNA biogenesis and cell division.
Nat Commun, 12, 2021
7D2Y
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BU of 7d2y by Molmil
complex of two RRM domains
Descriptor: Embryonic developmental protein tofu-6, RRM2, SULFATE ION
Authors:Wang, X, Liao, S, Xu, C.
Deposit date:2020-09-17
Release date:2021-08-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Molecular basis for PICS-mediated piRNA biogenesis and cell division.
Nat Commun, 12, 2021
7EJS
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BU of 7ejs by Molmil
Structure of ERH-2 bound to PICS-1
Descriptor: Enhancer of rudimentary homolog 2,Protein pid-3
Authors:Wang, X, Xu, C.
Deposit date:2021-04-02
Release date:2021-08-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.387 Å)
Cite:Molecular basis for PICS-mediated piRNA biogenesis and cell division.
Nat Commun, 12, 2021
7EJO
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BU of 7ejo by Molmil
Structure of ERH-2 bound to TOST-1
Descriptor: Enhancer of rudimentary homolog 2, Enhancer of rudimentary homolog 2,Protein tost-1
Authors:Wang, X, Xu, C.
Deposit date:2021-04-02
Release date:2021-08-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.191 Å)
Cite:Molecular basis for PICS-mediated piRNA biogenesis and cell division.
Nat Commun, 12, 2021
7WLP
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BU of 7wlp by Molmil
Epstein-Barr virus protein BKRF4 restricts nucleosome assembly to suppress host antiviral responses
Descriptor: Histone H2B type 1-O,Histone H2A type 1-D, Tegument protein BKRF4
Authors:Chen, J, Shan, S, Zhou, Z.
Deposit date:2022-01-13
Release date:2022-11-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Epstein-Barr virus protein BKRF4 restricts nucleosome assembly to suppress host antiviral responses.
Proc.Natl.Acad.Sci.USA, 119, 2022
7DLX
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BU of 7dlx by Molmil
crystal structure of H2AM4>Z-H2B
Descriptor: Histone H2B,Histone H2A
Authors:Dai, L.C, Zhou, Z.
Deposit date:2020-11-30
Release date:2021-06-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:Recognition of the inherently unstable H2A nucleosome by Swc2 is a major determinant for unidirectional H2A.Z exchange.
Cell Rep, 35, 2021
7CMS
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BU of 7cms by Molmil
Crystal structure of Tryptophanyl-tRNA synthetase from Bacillus stearothermophilus in complex with chuangxinmycin
Descriptor: (5~{S},6~{R})-5-methyl-7-thia-2-azatricyclo[6.3.1.0^{4,12}]dodeca-1(12),3,8,10-tetraene-6-carboxylic acid, PHOSPHATE ION, Tryptophan--tRNA ligase
Authors:Lyu, G, Fan, S, Jin, Y, Zou, S, Wu, G, Yang, Z.
Deposit date:2020-07-28
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the specific interaction between Geobacillus stearothermophilus tryptophanyl-tRNA synthetase and antimicrobial Chuangxinmycin.
J.Biol.Chem., 298, 2022

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PDB entries from 2024-05-01

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