Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5MZN
DownloadVisualize
BU of 5mzn by Molmil
Helicase Sen1
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Leonaite, B, Basquin, J, Conti, E.
Deposit date:2017-02-01
Release date:2017-04-19
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (1.787 Å)
Cite:Sen1 has unique structural features grafted on the architecture of the Upf1-like helicase family.
EMBO J., 36, 2017
5NKK
DownloadVisualize
BU of 5nkk by Molmil
SMG8-SMG9 complex GDP bound
Descriptor: 1,2-ETHANEDIOL, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Li, L, Basquin, J, Conti, E.
Deposit date:2017-03-31
Release date:2017-04-19
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structure of a SMG8-SMG9 complex identifies a G-domain heterodimer in the NMD effector proteins.
RNA, 23, 2017
7PW8
DownloadVisualize
BU of 7pw8 by Molmil
Human SMG1-8-9 kinase complex bound to AMPPNP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, MAGNESIUM ION, ...
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
7PW5
DownloadVisualize
BU of 7pw5 by Molmil
Human SMG1-8-9 kinase complex with AlphaFold predicted SMG8 C-terminus, bound to a SMG1 inhibitor
Descriptor: 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea, ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
7PW9
DownloadVisualize
BU of 7pw9 by Molmil
Human SMG1-9 kinase complex bound to AMPPNP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, MAGNESIUM ION, ...
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
7PW7
DownloadVisualize
BU of 7pw7 by Molmil
Human SMG1-9 kinase complex bound to a SMG1 inhibitor
Descriptor: 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea, ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
7PW4
DownloadVisualize
BU of 7pw4 by Molmil
Human SMG1-8-9 kinase complex bound to a SMG1 inhibitor
Descriptor: 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea, ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
7PW6
DownloadVisualize
BU of 7pw6 by Molmil
Human SMG1-8-9 kinase complex bound to a SMG1 inhibitor - SMG1 body
Descriptor: 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea, INOSITOL HEXAKISPHOSPHATE, Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
2HWX
DownloadVisualize
BU of 2hwx by Molmil
Structure of human SMG6 E1282C PIN domain mutant.
Descriptor: Telomerase-binding protein EST1A
Authors:Glavan, F, Behm-Ansmant, I, Izaurralde, E, Conti, E.
Deposit date:2006-08-02
Release date:2006-11-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex.
Embo J., 25, 2006
2HWW
DownloadVisualize
BU of 2hww by Molmil
Structure of PIN domain of human SMG6
Descriptor: Telomerase-binding protein EST1A
Authors:Glavan, F, Behm-Ansmant, I, Izaurralde, E, Conti, E.
Deposit date:2006-08-02
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex.
Embo J., 25, 2006
2HWY
DownloadVisualize
BU of 2hwy by Molmil
Structure of PIN domain of human SMG5.
Descriptor: Protein SMG5
Authors:Glavan, F, Behm-Ansmant, I, Izaurralde, E, Conti, E.
Deposit date:2006-08-02
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex.
Embo J., 25, 2006
2J0Q
DownloadVisualize
BU of 2j0q by Molmil
The crystal structure of the Exon Junction Complex at 3.2 A resolution
Descriptor: 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3', ATP-DEPENDENT RNA HELICASE DDX48, MAGNESIUM ION, ...
Authors:Bono, F, Ebert, J, Lorentzen, E, Conti, E.
Deposit date:2006-08-04
Release date:2006-08-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The Crystal Structure of the Exon Junction Complex Reveals How It Maintains a Stable Grip on Mrna.
Cell(Cambridge,Mass.), 126, 2006
2J0S
DownloadVisualize
BU of 2j0s by Molmil
The crystal structure of the Exon Junction Complex at 2.2 A resolution
Descriptor: 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP *UP*UP*UP*UP*U)-3', ATP-DEPENDENT RNA HELICASE DDX48, MAGNESIUM ION, ...
Authors:Bono, F, Ebert, J, Lorentzen, E, Conti, E.
Deposit date:2006-08-04
Release date:2006-09-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The Crystal Structure of the Exon Junction Complex Reveals How It Mantains a Stable Grip on Mrna
Cell(Cambridge,Mass.), 126, 2006
2J0U
DownloadVisualize
BU of 2j0u by Molmil
The crystal structure of eIF4AIII-Barentsz complex at 3.0 A resolution
Descriptor: ATP-DEPENDENT RNA HELICASE DDX48, PROTEIN CASC3
Authors:Bono, F, Ebert, J, Lorentzen, E, Conti, E.
Deposit date:2006-08-04
Release date:2006-09-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Crystal Structure of the Exon Junction Complex Reveals How It Mantains a Stable Grip on Mrna
Cell(Cambridge,Mass.), 126, 2006
2JA9
DownloadVisualize
BU of 2ja9 by Molmil
Structure of the N-terminal deletion of yeast exosome component Rrp40
Descriptor: EXOSOME COMPLEX EXONUCLEASE RRP40
Authors:Oddone, A, Lorentzen, E, Basquin, J, Gasch, A, Rybin, V, Conti, E, Sattler, M.
Deposit date:2006-11-24
Release date:2006-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Biochemical Characterization of the Yeast Exosome Component Rrp40
Embo Rep., 8, 2007
2JEA
DownloadVisualize
BU of 2jea by Molmil
Structure of a 9-subunit archaeal exosome bound to RNA
Descriptor: EXOSOME COMPLEX EXONUCLEASE 1, EXOSOME COMPLEX EXONUCLEASE 2, EXOSOME COMPLEX RNA-BINDING PROTEIN 1, ...
Authors:Lorentzen, E, Conti, E.
Deposit date:2007-01-16
Release date:2007-04-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:RNA Channelling by the Archaeal Exosome.
Embo Rep., 8, 2007
2JEB
DownloadVisualize
BU of 2jeb by Molmil
Structure of a 9-subunit archaeal exosome bound to Mn ions
Descriptor: CHLORIDE ION, EXOSOME COMPLEX EXONUCLEASE 1, EXOSOME COMPLEX EXONUCLEASE 2, ...
Authors:Lorentzen, E, Conti, E.
Deposit date:2007-01-16
Release date:2007-04-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:RNA Channelling by the Archaeal Exosome.
Embo Rep., 8, 2007
2JE6
DownloadVisualize
BU of 2je6 by Molmil
Structure of a 9-subunit archaeal exosome
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, EXOSOME COMPLEX EXONUCLEASE 1, ...
Authors:Lorentzen, E, Conti, E.
Deposit date:2007-01-15
Release date:2007-01-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:RNA Channelling by the Archaeal Exosome.
Embo Rep., 8, 2007
2X1G
DownloadVisualize
BU of 2x1g by Molmil
Crystal structure of Importin13 - Mago-Y14 complex
Descriptor: CADMUS, PROTEIN MAGO NASHI, RNA-BINDING PROTEIN 8A
Authors:Bono, F, Cook, A.G, Gruenwald, M, Ebert, J, Conti, E.
Deposit date:2009-12-23
Release date:2010-02-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Nuclear Import Mechanism of the Ejc Component Mago- Y14 Revealed by Structural Studies of Importin 13.
Mol.Cell, 37, 2010
2X19
DownloadVisualize
BU of 2x19 by Molmil
Crystal structure of Importin13 - RanGTP complex
Descriptor: GTP-BINDING NUCLEAR PROTEIN GSP1/CNR1, GUANOSINE-5'-TRIPHOSPHATE, IMPORTIN-13, ...
Authors:Bono, F, Cook, A.G, Gruenwald, M, Ebert, J, Conti, E.
Deposit date:2009-12-23
Release date:2010-02-16
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Nuclear Import Mechanism of the Ejc Component Mago- Y14 Revealed by Structural Studies of Importin 13.
Mol.Cell, 37, 2010
2XB2
DownloadVisualize
BU of 2xb2 by Molmil
Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machinery
Descriptor: EUKARYOTIC INITIATION FACTOR 4A-III, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Buchwald, G, Ebert, J, Basquin, C, Sauliere, J, Jayachandran, U, Bono, F, Le Hir, H, Conti, E.
Deposit date:2010-04-03
Release date:2010-05-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Insights Into the Recruitment of the Nmd Machinery from the Crystal Structure of a Core Ejc-Upf3B Complex.
Proc.Natl.Acad.Sci.USA, 107, 2010
2XGJ
DownloadVisualize
BU of 2xgj by Molmil
Structure of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-DEPENDENT RNA HELICASE DOB1, RNA (5'-(*AP*AP*AP*AP*A)-3')
Authors:Weir, J.R, Bonneau, F, Hentschel, J, Conti, E.
Deposit date:2010-06-04
Release date:2010-06-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Analysis Reveals the Characteristic Features of Mtr4, a Dexh Helicase Involved in Nuclear RNA Processing and Surveillance.
Proc.Natl.Acad.Sci.USA, 107, 2010
2XZO
DownloadVisualize
BU of 2xzo by Molmil
Upf1 helicase - RNA complex
Descriptor: 5'-R(*UP*UP*UP*UP*UP*UP*UP)-3', ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Chakrabarti, S, Jayachandran, U, Bonneau, F, Fiorini, F, Basquin, C, Domcke, S, Le Hir, H, Conti, E.
Deposit date:2010-11-26
Release date:2011-03-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:Molecular Mechanisms for the RNA-Dependent ATPase Activity of Upf1 and its Regulation by Upf2.
Mol.Cell, 41, 2011
2XZP
DownloadVisualize
BU of 2xzp by Molmil
Upf1 helicase
Descriptor: GLYCEROL, MALONATE ION, REGULATOR OF NONSENSE TRANSCRIPTS 1
Authors:Chakrabarti, S, Jayachandran, U, Bonneau, F, Fiorini, F, Basquin, C, Domcke, S, Le Hir, H, Conti, E.
Deposit date:2010-11-26
Release date:2011-03-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Molecular Mechanisms for the RNA-Dependent ATPase Activity of Upf1 and its Regulation by Upf2.
Mol.Cell, 41, 2011
2XZL
DownloadVisualize
BU of 2xzl by Molmil
Upf1-RNA complex
Descriptor: 5- R(*UP*UP*UP*UP*UP*UP*UP*UP*U) -3, ADENOSINE-5'-DIPHOSPHATE, ATP-DEPENDENT HELICASE NAM7, ...
Authors:Chakrabarti, S, Jayachandran, U, Bonneau, F, Fiorini, F, Basquin, C, Domcke, S, Le Hir, H, Conti, E.
Deposit date:2010-11-26
Release date:2011-03-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Mechanisms for the RNA-Dependent ATPase Activity of Upf1 and its Regulation by Upf2.
Mol.Cell, 41, 2011

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon