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8POP
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BU of 8pop by Molmil
HK97 small terminase in complex with DNA
分子名称: DNA (31-MER), Terminase small subunit
著者Chechik, M, Greive, S.J, Antson, A.A, Jenkins, H.T.
登録日2023-07-05
公開日2023-08-09
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of HK97 small terminase:DNA complex unveils a novel DNA binding mechanism by a circular protein.
Biorxiv, 2023
3ZQO
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BU of 3zqo by Molmil
Crystal structure of the small terminase oligomerization core domain from a SPP1-like bacteriophage (crystal form 3)
分子名称: POTASSIUM ION, TERMINASE SMALL SUBUNIT
著者Buttner, C.R, Chechik, M, Ortiz-Lombardia, M, Smits, C, Chechik, V, Jeschke, G, Dykeman, E, Benini, S, Alonso, J.C, Antson, A.A.
登録日2011-06-10
公開日2011-12-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Structural Basis for DNA Recognition and Loading Into a Viral Packaging Motor.
Proc.Natl.Acad.Sci.USA, 109, 2012
3ZQP
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BU of 3zqp by Molmil
Crystal structure of the small terminase oligomerization domain from a SPP1-like bacteriophage
分子名称: TERMINASE SMALL SUBUNIT
著者Buttner, C.R, Chechik, M, Ortiz-Lombardia, M, Smits, C, Chechik, V, Jeschke, G, Dykeman, E, Benini, S, Alonso, J.C, Antson, A.A.
登録日2011-06-10
公開日2011-12-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural Basis for DNA Recognition and Loading Into a Viral Packaging Motor.
Proc.Natl.Acad.Sci.USA, 109, 2012
3ZQQ
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BU of 3zqq by Molmil
Crystal structure of the full-length small terminase from a SPP1-like bacteriophage
分子名称: TERMINASE SMALL SUBUNIT
著者Buttner, C.R, Chechik, M, Ortiz-Lombardia, M, Smits, C, Chechik, V, Jeschke, G, Dykeman, E, Benini, S, Alonso, J.C, Antson, A.A.
登録日2011-06-10
公開日2011-12-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Structural Basis for DNA Recognition and Loading Into a Viral Packaging Motor.
Proc.Natl.Acad.Sci.USA, 109, 2012
3ZQM
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BU of 3zqm by Molmil
Crystal structure of the small terminase oligomerization core domain from a SPP1-like bacteriophage (crystal form 1)
分子名称: TERMINASE SMALL SUBUNIT
著者Buttner, C.R, Chechik, M, Ortiz-Lombardia, M, Smits, C, Chechik, V, Jeschke, G, Dykeman, E, Benini, S, Alonso, J.C, Antson, A.A.
登録日2011-06-10
公開日2011-12-28
最終更新日2012-02-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural Basis for DNA Recognition and Loading Into a Viral Packaging Motor.
Proc.Natl.Acad.Sci.USA, 109, 2012
3ZQN
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BU of 3zqn by Molmil
Crystal structure of the small terminase oligomerization core domain from a SPP1-like bacteriophage (crystal form 2)
分子名称: TERMINASE SMALL SUBUNIT
著者Buttner, C.R, Chechik, M, Ortiz-Lombardia, M, Smits, C, Chechik, V, Jeschke, G, Dykeman, E, Benini, S, Alonso, J.C, Antson, A.A.
登録日2011-06-10
公開日2011-12-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Basis for DNA Recognition and Loading Into a Viral Packaging Motor.
Proc.Natl.Acad.Sci.USA, 109, 2012
2CMP
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BU of 2cmp by Molmil
crystal structure of the DNA binding domain of G1P SMALL TERMINASE SUBUNIT from bacteriophage SF6
分子名称: TERMINASE SMALL SUBUNIT
著者Benini, S, Chechik, M, Ortiz-Lombardia, M, Polier, S, Shevtsov, M.B, DeLuchi, D, Alonso, J.C, Antson, A.A.
登録日2006-05-11
公開日2007-05-15
最終更新日2019-05-15
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献The 1.58 A Resolution Structure of the DNA-Binding Domain of Bacteriophage Sf6 Small Terminase Provides New Hints on DNA Binding
Acta Crystallogr.,Sect.F, 69, 2013
4ZC3
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BU of 4zc3 by Molmil
DNA binding domain of small terminase SF6 phage
分子名称: Terminase small subunit
著者Antson, A.A, Chechik, M, Jenkins, H.T, Greive, S.J.
登録日2015-04-15
公開日2015-12-30
最終更新日2016-02-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献DNA recognition for virus assembly through multiple sequence-independent interactions with a helix-turn-helix motif.
Nucleic Acids Res., 44, 2016
4XVN
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BU of 4xvn by Molmil
Crystal structure of the small terminase from thermophilic phage G20C
分子名称: Small terminase
著者Loredo-Varela, J, Jenkins, H.T, Chechik, M, Greive, S.J, Antson, A.A.
登録日2015-01-27
公開日2016-02-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of the small terminase from thermophilic phage G20C
To Be Published
6Z6E
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BU of 6z6e by Molmil
Crystal structure of the HK97 bacteriophage small terminase
分子名称: IODIDE ION, Terminase small subunit
著者Fung, H.K.H, Chechik, M, Baumann, C.G, Antson, A.A.
登録日2020-05-28
公開日2021-06-09
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system.
Nucleic Acids Res., 50, 2022
6Z6D
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BU of 6z6d by Molmil
Crystal structure of the HK97 bacteriophage large terminase
分子名称: BROMIDE ION, Terminase large subunit
著者Fung, H.K.H, Chechik, M, Baumann, C.G, Antson, A.A.
登録日2020-05-28
公開日2021-06-09
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system.
Nucleic Acids Res., 50, 2022
5NGD
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BU of 5ngd by Molmil
Crystal structure of the V325G mutant of the bacteriophage G20C portal protein
分子名称: Portal protein
著者Pascoa, T, Jenkins, H.T, Chechik, M, Greive, S.J, Antson, A.A.
登録日2017-03-17
公開日2017-03-29
最終更新日2018-08-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Porphyrin-Assisted Docking of a Thermophage Portal Protein into Lipid Bilayers: Nanopore Engineering and Characterization
Acs Nano, 11, 2017
6I9E
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BU of 6i9e by Molmil
Thermophage P23-45 empty expanded capsid
分子名称: Auxiliary protein, Major head protein
著者Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A.
登録日2018-11-23
公開日2019-02-06
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (3.74 Å)
主引用文献Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6IBC
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BU of 6ibc by Molmil
Thermophage P23-45 procapsid
分子名称: Major head protein
著者Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A.
登録日2018-11-29
公開日2019-02-13
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (4.39 Å)
主引用文献Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6IBG
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BU of 6ibg by Molmil
Bacteriophage G20c portal protein crystal structure for construct with intact N-terminus
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Portal protein
著者Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A.
登録日2018-11-30
公開日2019-01-23
最終更新日2022-03-30
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
2WBN
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BU of 2wbn by Molmil
Crystal structure of the g2p (large terminase) nuclease domain from the bacteriophage SPP1
分子名称: TERMINASE LARGE SUBUNIT
著者Smits, C, Chechik, M, Kovalevskiy, O.V, Shevtsov, M.B, Foster, A.W, Alonso, J.C, Antson, A.A.
登録日2009-03-02
公開日2009-03-24
最終更新日2011-10-12
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Basis for the Nuclease Activity of a Bacteriophage Large Terminase.
Embo Rep., 10, 2009
2WC9
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BU of 2wc9 by Molmil
Crystal structure of the g2p (large terminase) nuclease domain from the bacteriophage SPP1 with bound Mn
分子名称: MANGANESE (II) ION, SULFATE ION, TERMINASE LARGE SUBUNIT
著者Smits, C, Chechik, M, Kovalevskiy, O.V, Shevtsov, M.B, Foster, A.W, Alonso, J.C, Antson, A.A.
登録日2009-03-10
公開日2009-03-24
最終更新日2017-06-28
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Basis for the Nuclease Activity of a Bacteriophage Large Terminase.
Embo Rep., 10, 2009
5MFX
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BU of 5mfx by Molmil
Zika NS3 helicase:RNA complex
分子名称: ACETATE ION, CITRATE ANION, Genome polyprotein, ...
著者Jenkins, H.T, Ge, M, Chechik, M, Greive, S.J, Antson, A.A.
登録日2016-11-18
公開日2017-01-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.598 Å)
主引用文献How Zika virus NS3 helicase grips the first nucleotide of the leading RNA strand
To Be Published
2YCB
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BU of 2ycb by Molmil
Structure of the archaeal beta-CASP protein with N-terminal KH domains from Methanothermobacter thermautotrophicus
分子名称: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, PHOSPHATE ION, POTASSIUM ION, ...
著者Silva, A.P.G, Chechik, M, Byrne, R.T, Waterman, D.G, Ng, C.L, Dodson, E.J, Koonin, E.V, Antson, A.A, Smits, C.
登録日2011-03-13
公開日2011-05-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structure and Activity of a Novel Archaeal Beta-Casp Protein with N-Terminal Kh Domains.
Structure, 19, 2011
5M1O
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BU of 5m1o by Molmil
Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Cobalt
分子名称: COBALT (II) ION, Phage terminase large subunit
著者Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A.
登録日2016-10-09
公開日2016-10-26
最終更新日2017-05-03
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45, 2017
5M1F
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BU of 5m1f by Molmil
Crystal structure of the large terminase nuclease from thermophilic phage G20c
分子名称: Phage terminase large subunit
著者Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A.
登録日2016-10-07
公開日2016-10-26
最終更新日2017-05-03
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45, 2017
5M1Q
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BU of 5m1q by Molmil
Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Zinc
分子名称: Phage terminase large subunit, ZINC ION
著者Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A.
登録日2016-10-09
公開日2016-10-26
最終更新日2017-05-03
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45, 2017
5M1K
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BU of 5m1k by Molmil
Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Magnesium
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Phage terminase large subunit, ...
著者Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A.
登録日2016-10-09
公開日2016-10-26
最終更新日2017-05-03
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45, 2017
5M1P
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BU of 5m1p by Molmil
Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Calcium
分子名称: CALCIUM ION, Terminase large subunit
著者Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A.
登録日2016-10-09
公開日2016-10-26
最終更新日2017-05-03
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45, 2017
5M1N
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BU of 5m1n by Molmil
Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Manganese
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MANGANESE (II) ION, Phage terminase large subunit, ...
著者Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A.
登録日2016-10-09
公開日2016-10-26
最終更新日2017-05-03
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45, 2017

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件を2024-04-24に公開中

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