5NGD

Crystal structure of the V325G mutant of the bacteriophage G20C portal protein

Summary for 5NGD

Related4ZJN
DescriptorPortal protein (2 entities in total)
Functional Keywordsg20c, portal protein, bacteriophage, transport protein
Biological sourceThermus phage P7426
Total number of polymer chains4
Total molecular weight183926.91
Authors
Pascoa, T.,Jenkins, H.T.,Chechik, M.,Greive, S.J.,Antson, A.A. (deposition date: 2017-03-17, release date: 2017-03-29, Last modification date: 2018-08-01)
Primary citation
Cressiot, B.,Greive, S.J.,Si, W.,Pascoa, T.C.,Mojtabavi, M.,Chechik, M.,Jenkins, H.T.,Lu, X.,Aksimentiev, A.,Antson, A.A.,Wanunu, M.
Porphyrin-Assisted Docking of a Thermophage Portal Protein into Lipid Bilayers: Nanopore Engineering and Characterization
Acs Nano, 11:11931-11945, 2017
DOI: 10.1021/acsnano.7b06980
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.9 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.228000.5%0.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5ngd
no rotation
Molmil generated image of 5ngd
rotated about x axis by 90°
Molmil generated image of 5ngd
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 5ngd
no rotation
Molmil generated image of 5ngd
rotated about x axis by 90°
Molmil generated image of 5ngd
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5ngd.pdb1.gz [1.52 MB])