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1AFX
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BU of 1afx by Molmil
UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES
分子名称: RNA (5'-R(*GP*GP*UP*GP*UP*GP*AP*AP*CP*AP*CP*C)-3')
著者Butcher, S.E, Dieckmann, T, Feigon, J.
登録日1997-03-15
公開日1997-05-15
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Solution structure of the loop B domain from the hairpin ribozyme.
Nat.Struct.Biol., 6, 1999
1B36
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BU of 1b36 by Molmil
SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR, 10 STRUCTURES
分子名称: RNA (RNA LOOP B)
著者Butcher, S.E, Dieckmann, T, Feigon, J.
登録日1998-12-17
公開日1998-12-23
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the loop B domain from the hairpin ribozyme.
Nat.Struct.Biol., 6, 1999
1TLR
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BU of 1tlr by Molmil
SOLUTION STRUCTURE OF TETRALOOP RECEPTOR RNA, NMR, 20 STRUCTURES
分子名称: RNA TETRALOOP RECEPTOR (5'-R(GGCCUAAGACUUCGGUUAUGGCC)-3')
著者Butcher, S.E, Dieckmann, T, Feigon, J.
登録日1997-09-11
公開日1997-11-12
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of a GAAA tetraloop receptor RNA.
EMBO J., 16, 1997
8TNS
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BU of 8tns by Molmil
Solution structure of poly(UG) RNA (GU)12 G-quadruplex
分子名称: RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*U)-3')
著者Escobar, C.A, Petersen, R, Butcher, S.E.
登録日2023-08-02
公開日2023-11-15
最終更新日2023-11-22
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献Solution Structure of Poly(UG) RNA.
J.Mol.Biol., 435, 2023
6D30
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BU of 6d30 by Molmil
Structure of human Usb1 with uridine-uridine, inactive H208Q mutant
分子名称: CHLORIDE ION, RNA (5'-R(UP*U)-3'), U6 snRNA phosphodiesterase
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2018-04-14
公開日2018-09-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
6E7L
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BU of 6e7l by Molmil
Structure of a dimerized UUCG motif
分子名称: RNA (5'-R(*GP*GP*GP*CP*UP*GP*CP*AP*CP*UP*UP*CP*GP*GP*UP*GP*CP*UP*GP*CP*CP*C)-3')
著者Montemayor, E.J, Butcher, S.E.
登録日2018-07-26
公開日2019-07-31
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Structure of an RNA helix with pyrimidine mismatches and cross-strand stacking.
Acta Crystallogr.,Sect.F, 75, 2019
5UQJ
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BU of 5uqj by Molmil
Structure of yeast Usb1
分子名称: ACETATE ION, GLYCEROL, SULFATE ION, ...
著者Didychuk, A.L, Montemayor, E.J, Butcher, S.E.
登録日2017-02-08
公開日2017-08-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
5V1M
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BU of 5v1m by Molmil
Structure of human Usb1 with uridine 5'-monophosphate
分子名称: CHLORIDE ION, GLYCEROL, U6 snRNA phosphodiesterase, ...
著者Montemayor, E.J, Didychuk, A.L, Butcher, S.E.
登録日2017-03-02
公開日2017-08-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
5TF6
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BU of 5tf6 by Molmil
Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core
分子名称: CHLORIDE ION, GLYCEROL, POTASSIUM ION, ...
著者Montemayor, E.J, Brow, D.A, Butcher, S.E.
登録日2016-09-24
公開日2017-01-11
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core.
Acta Crystallogr D Struct Biol, 73, 2017
6ASO
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BU of 6aso by Molmil
Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA
分子名称: MAGNESIUM ION, MANGANESE (II) ION, POTASSIUM ION, ...
著者Montemayor, E.J, Brow, D.A, Butcher, S.E.
登録日2017-08-25
公開日2018-05-09
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA.
Nat Commun, 9, 2018
6D31
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BU of 6d31 by Molmil
Structure of human Usb1 with adenosine 5'-monophosphate
分子名称: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, GLYCEROL, ...
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2018-04-14
公開日2018-09-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
6D2Z
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BU of 6d2z by Molmil
Structure of human Usb1 with uridine-adenosine, inactive H208Q mutant
分子名称: 5'-R(UP*A)-3'), CHLORIDE ION, U6 snRNA phosphodiesterase
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2018-04-14
公開日2018-09-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
1XHP
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BU of 1xhp by Molmil
Solution Structure of the Extended U6 ISL as Observed in the U2/U6 complex from Saccharomyces cerevisiae
分子名称: U6 snRNA
著者Sashital, D.G, Cornilescu, G, Butcher, S.E.
登録日2004-09-20
公開日2004-11-23
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献U2-U6 RNA folding reveals a group II intron-like domain and a four-helix junction
Nat.Struct.Mol.Biol., 11, 2004
1Z2J
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BU of 1z2j by Molmil
Solution structure of the HIV-1 frameshift inducing element
分子名称: HIV-1 frameshift site RNA
著者Staple, D.W, Butcher, S.E.
登録日2005-03-08
公開日2005-06-14
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure and Thermodynamic Investigation of the HIV-1 Frameshift Inducing Element.
J.Mol.Biol., 349, 2005
4N0T
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BU of 4n0t by Molmil
Core structure of the U6 small nuclear ribonucleoprotein at 1.7 Angstrom resolution
分子名称: SULFATE ION, U4/U6 snRNA-associated-splicing factor PRP24, U6 snRNA
著者Montemayor, E.J, Curran, E.C, Liao, H, Andrews, K.L, Treba, C.N, Butcher, S.E, Brow, D.A.
登録日2013-10-02
公開日2014-05-14
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Core structure of the U6 small nuclear ribonucleoprotein at 1.7- angstrom resolution.
Nat.Struct.Mol.Biol., 21, 2014
6PPN
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BU of 6ppn by Molmil
Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA
分子名称: Mimic of unprocessed U6 snRNA, Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, ...
著者Montemayor, E.J, Butcher, S.E.
登録日2019-07-08
公開日2020-06-17
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020
6PFQ
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BU of 6pfq by Molmil
Structure of Kluyveromyces marxianus Usb1
分子名称: GLYCEROL, Uncharacterized protein YLR132C
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2019-06-21
公開日2019-12-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for the evolution of cyclic phosphodiesterase activity in the U6 snRNA exoribonuclease Usb1.
Nucleic Acids Res., 48, 2020
6PPQ
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BU of 6ppq by Molmil
Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' adenosine
分子名称: Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, RNA (5'-R(*UP*UP*UP*UP*UP*A)-3'), ...
著者Montemayor, E.J, Butcher, S.E.
登録日2019-07-08
公開日2020-06-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020
6PGL
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BU of 6pgl by Molmil
Structure of Kluyveromyces marxianus Usb1 with uridine monophosphate
分子名称: 1,2-ETHANEDIOL, 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, GLYCEROL, ...
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2019-06-24
公開日2019-12-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.845 Å)
主引用文献Structural basis for the evolution of cyclic phosphodiesterase activity in the U6 snRNA exoribonuclease Usb1.
Nucleic Acids Res., 48, 2020
6PPV
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BU of 6ppv by Molmil
Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' guanosine
分子名称: Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, RNA (5'-R(*AP*UP*UP*UP*UP*G)-3'), ...
著者Montemayor, E.J, Butcher, S.E.
登録日2019-07-08
公開日2020-06-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020
6PPP
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BU of 6ppp by Molmil
Structure of S. pombe Lsm2-8 with processed U6 snRNA
分子名称: Mimic of processed U6 snRNA, Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, ...
著者Montemayor, E.J, Butcher, S.E.
登録日2019-07-08
公開日2020-06-17
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020
2L9W
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BU of 2l9w by Molmil
Solution Structure of the C-terminal domain of Prp24
分子名称: U4/U6 snRNA-associated-splicing factor PRP24
著者Martin-Tumasz, S.A, Butcher, S.E.
登録日2011-02-25
公開日2011-06-29
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献A novel occluded RNA recognition motif in Prp24 unwinds the U6 RNA internal stem loop.
Nucleic Acids Res., 39, 2011
2O32
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Solution structure of U2 snRNA stem I from human, containing modified nucleotides
分子名称: 5'-R(*(PSU)P*CP*UP*CP*(OMG)P*(OMG)P*CP*CP*(PSU)P*UP*UP*UP*(OMG)P*GP*CP*UP*AP*AP*(OMG)P*A)-3'
著者Sashital, D.G, Venditti, V, Angers, C.G, Cornilescu, G, Butcher, S.E.
登録日2006-11-30
公開日2007-02-06
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human.
Rna, 13, 2007
2O33
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BU of 2o33 by Molmil
Solution structure of U2 snRNA stem I from S. cerevisiae
分子名称: U2 snRNA
著者Sashital, D.G, Venditti, V, Angers, C.A, Cornilescu, G, Butcher, S.E.
登録日2006-11-30
公開日2007-02-06
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human.
Rna, 13, 2007
2N8V
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An NMR/SAXS structure of the PKI domain of the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV) IRES
分子名称: RNA (70-MER)
著者Au, H.H, Cornilescu, G, Mouzakis, K.D, Burke, J.E, Ren, Q, Lee, S, Butcher, S.E, Jan, E.
登録日2015-10-27
公開日2015-11-11
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection.
Proc.Natl.Acad.Sci.USA, 112, 2015

 

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