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8FMH
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BU of 8fmh by Molmil
Structure of CBASS Cap5 from Pseudomonas syringae as an activated tetramer with the cyclic dinucleotide 3'2'-c-dGAMP ligand (2 tetramers in the AU)
分子名称: 3'2'-cGAMP, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Rechkoblit, O, Kreitler, D.F, Aggarwal, A.K.
登録日2022-12-23
公開日2024-02-07
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Activation of CBASS Cap5 endonuclease immune effector by cyclic nucleotides.
Nat.Struct.Mol.Biol., 2024
6P1H
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BU of 6p1h by Molmil
Cryo-EM Structure of DNA Polymerase Delta Holoenzyme
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (30-MER), ...
著者Jain, R, Rice, W, Aggarwal, A.K.
登録日2019-05-19
公開日2019-10-02
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Cryo-EM structure and dynamics of eukaryotic DNA polymerase delta holoenzyme.
Nat.Struct.Mol.Biol., 26, 2019
6Q02
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BU of 6q02 by Molmil
Polymerase Eta-catalyzed insertion of the mismatched A opposite template cytarabine (AraC) residue
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA Primer Strand, DNA polymerase eta, ...
著者Rechkoblit, O, Aggarwal, A.K.
登録日2019-08-01
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase eta.
Sci Rep, 9, 2019
6PZ3
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BU of 6pz3 by Molmil
Polymerase Eta-catalyzed insertion of correct G opposite template cytarabine (AraC) residue
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA Primer strand, DNA polymerase eta, ...
著者Rechkoblit, O, Aggarwal, A.K.
登録日2019-07-31
公開日2019-11-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.395 Å)
主引用文献Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase eta.
Sci Rep, 9, 2019
1MX3
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BU of 1mx3 by Molmil
Crystal structure of CtBP dehydrogenase core holo form
分子名称: ACETIC ACID, C-terminal binding protein 1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Kumar, V, Carlson, J.E, Ohgi, K.E, Edwards, T.E, Rose, D.W, Escalante, C.R, Aggarwal, A.K.
登録日2002-10-01
公開日2002-12-18
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Transcription Corepressor CtBP Is an NAD+-Regulated Dehydrogenase
Mol.Cell, 10, 2002
1N72
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BU of 1n72 by Molmil
Structure and Ligand of a Histone Acetyltransferase Bromodomain
分子名称: HISTONE ACETYLTRANSFERASE
著者Dhalluin, C, Carlson, J.E, Zeng, L, He, C, Aggarwal, A.K, Zhou, M.-M.
登録日2002-11-12
公開日2002-12-11
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure and Ligand of a Histone Acetyltransferase Bromodomain
Nature, 399, 1999
3BJY
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BU of 3bjy by Molmil
Catalytic core of Rev1 in complex with DNA (modified template guanine) and incoming nucleotide
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*DAP*DTP*DCP*DCP*DTP*DCP*DCP*DCP*DCP*DTP*DAP*(DOC))-3'), DNA (5'-D(*DTP*DAP*DAP*(P)P*DGP*DTP*DAP*DGP*DGP*DGP*DGP*DAP*DGP*DGP*DAP*DT)-3'), ...
著者Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
登録日2007-12-05
公開日2008-10-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Protein-template-directed synthesis across an acrolein-derived DNA adduct by yeast Rev1 DNA polymerase
Structure, 16, 2008
1OXJ
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BU of 1oxj by Molmil
Crystal structure of the Smaug RNA binding domain
分子名称: RNA-binding protein Smaug
著者Green, J.B, Gardner, C.D, Wharton, R.P, Aggarwal, A.K.
登録日2003-04-02
公開日2003-07-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献RNA recognition via the SAM domain of Smaug.
Mol.Cell, 11, 2003
3BSB
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BU of 3bsb by Molmil
Crystal Structure of Human Pumilio1 in Complex with CyclinB reverse RNA
分子名称: 5'-R(*UP*UP*UP*AP*AP*UP*GP*UP*U)-3', Pumilio homolog 1
著者Gupta, Y.K, Nair, D.T, Wharton, R.P, Aggarwal, A.K.
登録日2007-12-23
公開日2008-04-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity.
Structure, 16, 2008
3BSX
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BU of 3bsx by Molmil
Crystal Structure of Human Pumilio 1 in complex with Puf5 RNA
分子名称: 5'-R(*UP*UP*GP*UP*AP*AP*UP*AP*UP*UP*A)-3', Pumilio homolog 1
著者Gupta, Y.K, Nair, D.T, Wharton, R.P, Aggarwal, A.K.
登録日2007-12-26
公開日2008-04-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity.
Structure, 16, 2008
1JGG
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BU of 1jgg by Molmil
Even-skipped Homeodomain Complexed to AT-rich DNA
分子名称: 5'-D(P*AP*AP*TP*TP*CP*AP*AP*TP*TP*A)-3', 5'-D(P*TP*AP*AP*TP*TP*GP*AP*AP*TP*T)-3', Segmentation Protein Even-Skipped
著者Hirsch, J.A, Aggarwal, A.K.
登録日2001-06-25
公開日2001-07-06
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the even-skipped homeodomain complexed to AT-rich DNA: new perspectives on homeodomain specificity.
EMBO J., 14, 1995
1JIH
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BU of 1jih by Molmil
Yeast DNA Polymerase ETA
分子名称: DNA Polymerase ETA
著者Trincao, J, Johnson, R.E, Escalante, C.R, Prakash, S, Prakash, L, Aggarwal, A.K.
登録日2001-07-02
公開日2002-01-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis
Mol.Cell, 8, 2001
5HR4
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BU of 5hr4 by Molmil
Structure of Type IIL restriction-modification enzyme MmeI in complex with DNA has implications for engineering of new specificities
分子名称: CALCIUM ION, DNA (5'-D(P*GP*TP*TP*AP*TP*GP*TP*CP*GP*GP*AP*TP*A)-3'), DNA (5'-D(P*TP*AP*TP*CP*CP*GP*AP*CP*AP*TP*AP*AP*C)-3'), ...
著者Callahan, S.J, Luyten, Y.A, Gupta, Y.K, Wilson, G.G, Roberts, R.J, Morgan, R.D, Aggarwal, A.K.
登録日2016-01-22
公開日2016-04-27
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.5964 Å)
主引用文献Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities.
Plos Biol., 14, 2016
5IUD
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BU of 5iud by Molmil
Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer
分子名称: DNA polymerase alpha catalytic subunit, DNA primer, DNA template
著者Coloma, J, Aggarwal, A.K.
登録日2016-03-17
公開日2016-04-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer.
Sci Rep, 6, 2016
5J18
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BU of 5j18 by Molmil
Solution structure of Ras Binding Domain (RBD) of B-Raf complexed with Rigosertib (Complex I)
分子名称: N-[2-methoxy-5-({[(E)-2-(2,4,6-trimethoxyphenyl)ethenyl]sulfonyl}methyl)phenyl]glycine, Serine/threonine-protein kinase B-raf
著者Dutta, K, Vasquez-Del Carpio, R, Aggarwal, A.K, Reddy, E.P.
登録日2016-03-29
公開日2016-05-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A Small Molecule RAS-Mimetic Disrupts RAS Association with Effector Proteins to Block Signaling.
Cell, 165, 2016
5J2R
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BU of 5j2r by Molmil
Solution structure of Ras Binding Domain (RBD) of B-Raf
分子名称: N-[2-methoxy-5-({[(E)-2-(2,4,6-trimethoxyphenyl)ethenyl]sulfonyl}methyl)phenyl]glycine, Serine/threonine-protein kinase B-raf
著者Dutta, K, Vasquez-Del Carpio, R, Aggarwal, A.K, Reddy, E.P.
登録日2016-03-29
公開日2016-05-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A Small Molecule RAS-Mimetic Disrupts RAS Association with Effector Proteins to Block Signaling.
Cell, 165, 2016
1B8I
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BU of 1b8i by Molmil
STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
分子名称: DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3'), PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE), ...
著者Passner, J.M, Ryoo, H.-D, Shen, L, Mann, R.S, Aggarwal, A.K.
登録日1999-02-01
公開日1999-04-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex.
Nature, 397, 1999
1AU7
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BU of 1au7 by Molmil
PIT-1 MUTANT/DNA COMPLEX
分子名称: CONSENSUS DNA 25-MER, DNA (5'-D(*CP*TP*TP*CP*CP*TP*CP*AP*TP*GP*TP*AP*TP*AP*TP*AP*C P*AP*TP*GP*AP*GP* GP*A)-3'), PROTEIN PIT-1
著者Jacobson, E.M, Li, P, Leon-Del-Rio, A, Rosenfeld, M.G, Aggarwal, A.K.
登録日1997-09-12
公開日1998-01-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility.
Genes Dev., 11, 1997
1D2I
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BU of 1d2i by Molmil
CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER
分子名称: DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3'), MAGNESIUM ION, PROTEIN (RESTRICTION ENDONUCLEASE BGLII)
著者Lukacs, C.M, Kucera, R, Schildkraut, I, Aggarwal, A.K.
登録日1999-09-23
公開日2000-02-21
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution.
Nat.Struct.Biol., 7, 2000
1DFM
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BU of 1dfm by Molmil
Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer
分子名称: CALCIUM ION, DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3'), ENDONUCLEASE BGLII
著者Lukacs, C.M, Kucera, R, Schildkraut, I, Aggarwal, A.K.
登録日1999-12-06
公開日2000-02-21
最終更新日2018-01-31
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution.
Nat.Struct.Biol., 7, 2000
1ES8
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BU of 1es8 by Molmil
Crystal structure of free BglII
分子名称: ACETIC ACID, RESTRICTION ENDONUCLEASE BGLII
著者Lukacs, C.M, Aggarwal, A.K.
登録日2000-04-07
公開日2001-01-17
最終更新日2012-05-09
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of free BglII reveals an unprecedented scissor-like motion for opening an endonuclease.
Nat.Struct.Biol., 8, 2001
2FOK
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BU of 2fok by Molmil
STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI
分子名称: FOKI RESTRICTION ENDONUCLEASE
著者Wah, D.A, Bitinaite, J, Schildkraut, I, Aggarwal, A.K.
登録日1998-03-30
公開日1998-06-17
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of FokI has implications for DNA cleavage.
Proc.Natl.Acad.Sci.Usa, 95, 1998
1Q7F
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BU of 1q7f by Molmil
Brain Tumor NHL domain
分子名称: brain tumor CG10719-PA
著者Edwards, T.A, Wilkinson, B.D, Wharton, R.P, Aggarwal, A.K.
登録日2003-08-18
公開日2003-10-21
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Model of the Brain Tumor-Pumilio translation repressor complex
Genes Dev., 17, 2003
5J17
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BU of 5j17 by Molmil
Solution structure of Ras Binding Domain (RBD) of B-Raf
分子名称: Serine/threonine-protein kinase B-raf
著者Dutta, K, Vasquez-Del Carpio, R, Aggarwal, A.K, Reddy, E.P.
登録日2016-03-29
公開日2016-10-05
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A Small Molecule RAS-Mimetic Disrupts RAS Association with Effector Proteins to Block Signaling.
Cell, 165, 2016
5JRZ
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BU of 5jrz by Molmil
Structure of the NS3 helicase from the French Polynesia strain of the Zika virus
分子名称: ACETATE ION, Helicase, PYROPHOSPHATE 2-
著者Jain, R, Coloma, J, Aggarwal, A.K.
登録日2016-05-06
公開日2016-07-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Structure of the NS3 helicase from Zika virus.
Nat.Struct.Mol.Biol., 23, 2016

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