Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1RH9
DownloadVisualize
BU of 1rh9 by Molmil
Family GH5 endo-beta-mannanase from Lycopersicon esculentum (tomato)
Descriptor: endo-beta-mannanase
Authors:Oakley, A.J, Bourgault, R, Bewley, J.D, Wilce, M.C.J.
Deposit date:2003-11-14
Release date:2005-04-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Three-dimensional structure of (1,4)-beta-D-mannan mannanohydrolase from tomato fruit.
Protein Sci., 14, 2005
4XR0
DownloadVisualize
BU of 4xr0 by Molmil
Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- G/T mismatch.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*TP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3'), ...
Authors:Oakley, A.J.
Deposit date:2015-01-20
Release date:2015-08-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Replisome speed determines the efficiency of the Tus-Ter replication termination barrier.
Nature, 525, 2015
4XR1
DownloadVisualize
BU of 4xr1 by Molmil
Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- AG/AT mismatch.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*GP*TP*AP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*G)-3'), ...
Authors:Oakley, A.J.
Deposit date:2015-01-20
Release date:2015-08-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Replisome speed determines the efficiency of the Tus-Ter replication termination barrier.
Nature, 525, 2015
4XR2
DownloadVisualize
BU of 4xr2 by Molmil
Escherichia Coli Replication Terminator Protein (Tus) H114A mutant Complexed With DNA- TerA lock.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, DNA (5'-D(*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*C)-3'), ...
Authors:Oakley, A.J.
Deposit date:2015-01-20
Release date:2015-08-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Replisome speed determines the efficiency of the Tus-Ter replication termination barrier.
Nature, 525, 2015
4XR3
DownloadVisualize
BU of 4xr3 by Molmil
Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- GC(6) swapped.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*TP*AP*CP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*GP*T)-3'), ...
Authors:Oakley, A.J.
Deposit date:2015-01-20
Release date:2015-08-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Replisome speed determines the efficiency of the Tus-Ter replication termination barrier.
Nature, 525, 2015
2EWJ
DownloadVisualize
BU of 2ewj by Molmil
Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- Locked form
Descriptor: 5'-D(*T*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3', 5'-D(*TP*G*AP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3', DNA replication terminus site-binding protein, ...
Authors:Oakley, A.J, Mulcair, M.D, Schaeffer, P.M, Dixon, N.E.
Deposit date:2005-11-03
Release date:2006-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A molecular mousetrap determines polarity of termination of DNA replication in E. coli.
Cell(Cambridge,Mass.), 125, 2006
3EE2
DownloadVisualize
BU of 3ee2 by Molmil
Structure of human prostaglandin D-synthase (hGSTS1-1) in complex with nocodazole
Descriptor: GLUTATHIONE, Glutathione-requiring prostaglandin D synthase, MAGNESIUM ION, ...
Authors:Oakley, A.J.
Deposit date:2008-09-04
Release date:2008-09-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Identification and characterisation of new inhibitors for the human hematopoietic prostaglandin D(2) synthase
Eur.J.Med.Chem., 45, 2010
6PNN
DownloadVisualize
BU of 6pnn by Molmil
Human GSTO1-1 complexed with 2-chloro-N-(4-chloro-3-(N-(2-methoxyethyl)-N-methylsulfamoyl)phenyl)acetamide
Descriptor: 2-chloro-N-{4-chloro-3-[(2-methoxyethyl)(methyl)sulfamoyl]phenyl}acetamide, Glutathione S-transferase omega-1, L(+)-TARTARIC ACID, ...
Authors:Oakley, A.J.
Deposit date:2019-07-02
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Development of Benzenesulfonamide Derivatives as Potent Glutathione Transferase Omega-1 Inhibitors.
J.Med.Chem., 63, 2020
6PNM
DownloadVisualize
BU of 6pnm by Molmil
Human GSTO1-1 complexed with 2-chloro-N-(4-chloro-3-(morpholinosulfonyl)phenyl)acetamide
Descriptor: 2-chloro-N-{4-chloro-3-[(morpholin-4-yl)sulfonyl]phenyl}acetamide, Glutathione S-transferase omega-1, L(+)-TARTARIC ACID, ...
Authors:Oakley, A.J.
Deposit date:2019-07-02
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Development of Benzenesulfonamide Derivatives as Potent Glutathione Transferase Omega-1 Inhibitors.
J.Med.Chem., 63, 2020
6PNO
DownloadVisualize
BU of 6pno by Molmil
Human GSTO1-1 complexed with 2-chloro-N-(4-chloro-3-(N-isopropylsulfamoyl)phenyl)acetamide
Descriptor: 2-chloro-N-{4-chloro-3-[(propan-2-yl)sulfamoyl]phenyl}acetamide, Glutathione S-transferase omega-1, L(+)-TARTARIC ACID, ...
Authors:Oakley, A.J.
Deposit date:2019-07-02
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Development of Benzenesulfonamide Derivatives as Potent Glutathione Transferase Omega-1 Inhibitors.
J.Med.Chem., 63, 2020
8GJ2
DownloadVisualize
BU of 8gj2 by Molmil
E. coli clamp loader with closed clamp on primed template DNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ...
Authors:Oakley, A.J, Xu, Z.-Q, Dixon, N.E.
Deposit date:2023-03-14
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural characterisation of the complete cycle of sliding clamp loading in E. coli
To Be Published
8GJ0
DownloadVisualize
BU of 8gj0 by Molmil
E. coli clamp loader with open clamp on primed template DNA (form 1)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ...
Authors:Oakley, A.J, Xu, Z.-Q, Dixon, N.E.
Deposit date:2023-03-14
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural characterisation of the complete cycle of sliding clamp loading in E. coli
To Be Published
8GJ3
DownloadVisualize
BU of 8gj3 by Molmil
E. coli clamp loader on primed template DNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ...
Authors:Oakley, A.J, Xu, Z.-Q, Dixon, N.E.
Deposit date:2023-03-14
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural characterisation of the complete cycle of sliding clamp loading in E. coli
To Be Published
8GIY
DownloadVisualize
BU of 8giy by Molmil
E. coli clamp loader with closed clamp
Descriptor: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ...
Authors:Oakley, A.J, Xu, Z.-Q, Dixon, N.E.
Deposit date:2023-03-14
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural characterisation of the complete cycle of sliding clamp loading in E. coli
To Be Published
8GJ1
DownloadVisualize
BU of 8gj1 by Molmil
E. coli clamp loader with open clamp on primed template DNA (form 2)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ...
Authors:Oakley, A.J, Xu, Z.-Q, Dixon, N.E.
Deposit date:2023-03-14
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural characterisation of the complete cycle of sliding clamp loading in E. coli
To Be Published
8GIZ
DownloadVisualize
BU of 8giz by Molmil
E. coli clamp loader with open clamp
Descriptor: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ...
Authors:Oakley, A.J, Xu, Z.-Q, Dixon, N.E.
Deposit date:2023-03-14
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural characterisation of the complete cycle of sliding clamp loading in E. coli
To Be Published
3IBT
DownloadVisualize
BU of 3ibt by Molmil
Structure of 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase (QDO)
Descriptor: 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase
Authors:Oakley, A.J.
Deposit date:2009-07-16
Release date:2010-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for cofactor-independent dioxygenation of N-heteroaromatic compounds at the alpha/beta-hydrolase fold.
Proc.Natl.Acad.Sci.USA, 107, 2010
4MZ9
DownloadVisualize
BU of 4mz9 by Molmil
Revised structure of E. coli SSB
Descriptor: Single-stranded DNA-binding protein
Authors:Oakley, A.J.
Deposit date:2013-09-29
Release date:2013-12-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Intramolecular binding mode of the C-terminus of Escherichia coli single-stranded DNA binding protein determined by nuclear magnetic resonance spectroscopy.
Nucleic Acids Res., 42, 2014
4UXV
DownloadVisualize
BU of 4uxv by Molmil
Cytoplasmic domain of bacterial cell division protein EzrA
Descriptor: SEPTATION RING FORMATION REGULATOR EZRA
Authors:Cleverley, R.M, Barrett, J.R, Basle, A, Khai-Bui, N, Hewitt, L, Solovyova, A, Xu, Z, Daniela, R.A, Dixon, N.E, Harry, E.J, Oakley, A.J, Vollmer, W, Lewis, R.J.
Deposit date:2014-08-27
Release date:2014-10-22
Last modified:2014-12-03
Method:X-RAY DIFFRACTION (3.961 Å)
Cite:Structure and Function of a Spectrin-Like Regulator of Bacterial Cytokinesis.
Nat.Commun., 5, 2014
4UY3
DownloadVisualize
BU of 4uy3 by Molmil
Cytoplasmic domain of bacterial cell division protein ezra
Descriptor: SEPTATION RING FORMATION REGULATOR EZRA
Authors:Cleverley, R.M, Barrett, J.R, Basle, A, Khai-Bui, N, Hewitt, L, Solovyova, A, Xu, Z, Daniela, R.A, Dixon, N.E, Harry, E.J, Oakley, A.J, Vollmer, W, Lewis, R.J.
Deposit date:2014-08-28
Release date:2014-10-22
Last modified:2014-12-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and Function of a Spectrin-Like Regulator of Bacterial Cytokinesis.
Nat.Commun., 5, 2014
3VLN
DownloadVisualize
BU of 3vln by Molmil
Human Glutathione Transferase O1-1 C32S Mutant in Complex with Ascorbic Acid
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ASCORBIC ACID, ...
Authors:Brock, J, Board, P.G, Oakley, A.J.
Deposit date:2011-12-02
Release date:2012-05-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into the dehydroascorbate reductase activity of human omega-class glutathione transferases.
J.Mol.Biol., 420, 2012
6WVJ
DownloadVisualize
BU of 6wvj by Molmil
Cryo-EM structure of Bacillus subtilis RNA Polymerase elongation complex
Descriptor: DNA (5'-D(*TP*GP*TP*CP*GP*GP*GP*CP*GP*TP*CP*CP*GP*CP*GP*CP*GP*CP*C)-3'), DNA (5'-D(P*AP*CP*GP*CP*CP*CP*GP*AP*CP*A)-3'), DNA-directed RNA polymerase subunit alpha, ...
Authors:Newing, T, Tolun, G, Oakley, A.J.
Deposit date:2020-05-06
Release date:2020-11-18
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Molecular basis for RNA polymerase-dependent transcription complex recycling by the helicase-like motor protein HelD.
Nat Commun, 11, 2020
6WVK
DownloadVisualize
BU of 6wvk by Molmil
Cryo-EM structure of Bacillus subtilis RNA Polymerase in complex with HelD
Descriptor: DNA helicase IV, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Newing, T, Tolun, G, Oakley, A.J.
Deposit date:2020-05-06
Release date:2020-11-18
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Molecular basis for RNA polymerase-dependent transcription complex recycling by the helicase-like motor protein HelD.
Nat Commun, 11, 2020
1UIS
DownloadVisualize
BU of 1uis by Molmil
The 2.0 crystal structure of eqFP611, a far-red fluorescent protein from the sea anemone Entacmaea quadricolor
Descriptor: ACETIC ACID, CALCIUM ION, red fluorescent protein FP611
Authors:Petersen, J, Wilmann, P.G, Beddoe, T, Oakley, A.J, Devenish, R.J, Prescott, M, Rossjohn, J.
Deposit date:2003-07-21
Release date:2003-10-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The 2.0A crystal structure of eqFP611, a far-red fluorescent protein from the sea anemone Entacmaea quadricolor
J.Biol.Chem., 278, 2003
4ZW2
DownloadVisualize
BU of 4zw2 by Molmil
Crystal structure of the Mouse voltage gated calcium channel beta subunit isoform 1a in complex with Alpha Interaction Domain peptide.
Descriptor: TRIETHYLENE GLYCOL, Voltage-dependent L-type calcium channel subunit alpha-1S, Voltage-dependent L-type calcium channel subunit beta-1,Voltage-dependent L-type calcium channel subunit beta-1
Authors:Norris, N.C, Oakley, A.J.
Deposit date:2015-05-19
Release date:2016-06-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural and biophysical analyses of the skeletal dihydropyridine receptor beta subunit beta 1a reveal critical roles of domain interactions for stability.
J. Biol. Chem., 292, 2017

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon