Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6A6A
DownloadVisualize
BU of 6a6a by Molmil
VanYB in complex with D-Alanine
Descriptor: ACETATE ION, D-ALANINE, D-alanyl-D-alanine carboxypeptidase, ...
Authors:Kim, H.S, Hahn, H.
Deposit date:2018-06-27
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural basis for the substrate recognition of peptidoglycan pentapeptides by Enterococcus faecalis VanYB.
Int. J. Biol. Macromol., 119, 2018
3P2F
DownloadVisualize
BU of 3p2f by Molmil
Crystal structure of TofI in an apo form
Descriptor: AHL synthase
Authors:Yu, S, Rhee, S.
Deposit date:2010-10-02
Release date:2011-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Small-molecule inhibitor binding to an N-acyl-homoserine lactone synthase
Proc.Natl.Acad.Sci.USA, 108, 2011
3P2H
DownloadVisualize
BU of 3p2h by Molmil
Crystal structure of TofI in a ternary complex with an inhibitor and MTA
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, AHL synthase, N-(3-oxocyclohex-1-en-1-yl)octanamide
Authors:Yu, S, Rhee, S.
Deposit date:2010-10-02
Release date:2011-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Small-molecule inhibitor binding to an N-acyl-homoserine lactone synthase
Proc.Natl.Acad.Sci.USA, 108, 2011
5XTG
DownloadVisualize
BU of 5xtg by Molmil
Crystal structure of the cis-dihydrodiol naphthalene dehydrogenase NahB from Pseudomonas sp. MC1 in the presence of NAD+ and 2,3-dihydroxybiphenyl
Descriptor: 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase, BIPHENYL-2,3-DIOL, CITRIC ACID, ...
Authors:Park, A.K, Kim, H.-W.
Deposit date:2017-06-19
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.318 Å)
Cite:Crystal structure of cis-dihydrodiol naphthalene dehydrogenase (NahB) from Pseudomonas sp. MC1: Insights into the early binding process of the substrate
Biochem. Biophys. Res. Commun., 491, 2017
5XTF
DownloadVisualize
BU of 5xtf by Molmil
Crystal structure of the cis-dihydrodiol naphthalene dehydrogenase NahB from Pseudomonas sp. MC1
Descriptor: 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
Authors:Park, A.K, Kim, H.-W.
Deposit date:2017-06-19
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.095 Å)
Cite:Crystal structure of cis-dihydrodiol naphthalene dehydrogenase (NahB) from Pseudomonas sp. MC1: Insights into the early binding process of the substrate
Biochem. Biophys. Res. Commun., 491, 2017
7YC5
DownloadVisualize
BU of 7yc5 by Molmil
Cryo-EM structure of SARS-CoV-2 spike in complex with K202.B bispecific antibody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain from K202.B, bispecific antibody, ...
Authors:Yoo, Y, Cho, H.S.
Deposit date:2022-06-30
Release date:2023-07-05
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Novel bispecific human antibody platform specifically targeting a fully open spike conformation potently neutralizes multiple SARS-CoV-2 variants
Antiviral Res., 212, 2023
5ZRD
DownloadVisualize
BU of 5zrd by Molmil
Tyrosinase from Burkholderia thailandensis (BtTYR) at low pH condition
Descriptor: CITRIC ACID, COPPER (II) ION, GLYCEROL, ...
Authors:Lee, S, Son, H.-F, Kim, K.-J.
Deposit date:2018-04-24
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for Highly Efficient Production of Catechol Derivatives at Acidic pH by Tyrosinase from Burkholderia thailandensis
Acs Catalysis, 8, 2018
5ZRE
DownloadVisualize
BU of 5zre by Molmil
Tyrosinase from Burkholderia thailandensis (BtTYR) at high pH condition
Descriptor: COPPER (II) ION, GLYCEROL, OXYGEN ATOM, ...
Authors:Lee, S, Son, H.-F, Kim, K.-J.
Deposit date:2018-04-24
Release date:2018-10-31
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis for Highly Efficient Production of Catechol Derivatives at Acidic pH by Tyrosinase from Burkholderia thailandensis
Acs Catalysis, 8, 2018
2XHS
DownloadVisualize
BU of 2xhs by Molmil
Crystal structure of the ligand binding domain of Fushi tarazu factor 1 of Drosophila melanogaster.
Descriptor: NUCLEAR HORMONE RECEPTOR FTZ-F1, SEGMENTATION PROTEIN FUSHI TARAZU
Authors:Yoo, J.H, Cho, H.S.
Deposit date:2010-06-21
Release date:2011-07-20
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Fushi Tarazu Factor 1 Ligand Binding Domain/Fushi Tarazu Peptide Complex Identifies New Class of Nuclear Receptors.
J.Biol.Chem., 286, 2011
5K19
DownloadVisualize
BU of 5k19 by Molmil
Crystal structure of WD repeat-containing protein 20
Descriptor: GLYCEROL, SULFATE ION, WD repeat-containing protein 20
Authors:Li, H, D'Andrea, A.D, Zheng, N.
Deposit date:2016-05-17
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Allosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20.
Mol.Cell, 63, 2016
5K1A
DownloadVisualize
BU of 5k1a by Molmil
Crystal structure of the UAF1-USP12 complex in C2 space group
Descriptor: Ubiquitin carboxyl-terminal hydrolase 12, WD repeat-containing protein 48, ZINC ION
Authors:Li, H, D'Andrea, A.D, Zheng, N.
Deposit date:2016-05-18
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Allosteric Activation of Ubiquitin-Specific Proteases by beta-Propeller Proteins UAF1 and WDR20.
Mol.Cell, 63, 2016
5YSS
DownloadVisualize
BU of 5yss by Molmil
Crystal structure of aminocaproic acid cyclase in complex with NAD (+)
Descriptor: 3-hydroxybutyrate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Fu, Y, Yeom, S.J, Lee, S.G.
Deposit date:2017-11-15
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.276 Å)
Cite:A synthetic microbial biosensor for high-throughput screening of lactam biocatalysts
Nat Commun, 9, 2018
8HFB
DownloadVisualize
BU of 8hfb by Molmil
Evolved variant of quercetin 2,4-dioxygenase from Bacillus subtilis
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, NICKEL (II) ION, ...
Authors:Eom, H, Song, W.J.
Deposit date:2022-11-10
Release date:2023-03-08
Last modified:2023-03-29
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Underlying Role of Hydrophobic Environments in Tuning Metal Elements for Efficient Enzyme Catalysis.
J.Am.Chem.Soc., 145, 2023
5ZXB
DownloadVisualize
BU of 5zxb by Molmil
Crystal structure of ACK1 with compound 10d
Descriptor: Activated CDC42 kinase 1, N-{3-[7-{[6-(4-acetylpiperazin-1-yl)pyridin-3-yl]amino}-1-methyl-2-oxo-1,4-dihydropyrimido[4,5-d]pyrimidin-3(2H)-yl]-4-methylphenyl}-3-(trifluoromethyl)benzamide
Authors:Hong, E.M, Kim, H.L, Sim, T.B.
Deposit date:2018-05-18
Release date:2018-09-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.198 Å)
Cite:First SAR Study for Overriding NRAS Mutant Driven Acute Myeloid Leukemia.
J. Med. Chem., 61, 2018
3SH4
DownloadVisualize
BU of 3sh4 by Molmil
Laminin G like domain 3 from human perlecan
Descriptor: LG3 peptide
Authors:Van Le, B, Kim, K.K.
Deposit date:2011-06-15
Release date:2011-12-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of the LG3 Domain of Endorepellin, an Angiogenesis Inhibitor.
J.Mol.Biol., 414, 2011
3SH5
DownloadVisualize
BU of 3sh5 by Molmil
Calcium-bound Laminin G like domain 3 from human perlecan
Descriptor: CALCIUM ION, LG3 peptide
Authors:Van Le, B, Kim, K.K.
Deposit date:2011-06-16
Release date:2011-12-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of the LG3 Domain of Endorepellin, an Angiogenesis Inhibitor.
J.Mol.Biol., 414, 2011
7LFO
DownloadVisualize
BU of 7lfo by Molmil
Protein Tyrosine Phosphatase 1B
Descriptor: MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
Authors:Sarkar, A, Kim, E.Y, Hongdusit, A, Sankaran, B, Fox, J.M.
Deposit date:2021-01-18
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Microbially Guided Discovery and Biosynthesis of Biologically Active Natural Products.
Acs Synth Biol, 10, 2021
1LAN
DownloadVisualize
BU of 1lan by Molmil
LEUCINE AMINOPEPTIDASE COMPLEX WITH L-LEUCINAL
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, LEUCINE, LEUCINE AMINOPEPTIDASE, ...
Authors:Straeter, N, Lipscomb, W.N.
Deposit date:1995-08-11
Release date:1995-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two-metal ion mechanism of bovine lens leucine aminopeptidase: active site solvent structure and binding mode of L-leucinal, a gem-diolate transition state analogue, by X-ray crystallography.
Biochemistry, 34, 1995
3KPE
DownloadVisualize
BU of 3kpe by Molmil
Solution structure of the respiratory syncytial virus (RSV)six-helix bundle complexed with TMC353121, a small-moleucule inhibitor of RSV
Descriptor: 2-[[6-[[[2-(3-hydroxypropyl)-5-methylphenyl]amino]methyl]-2-[[3-(4-morpholinyl)propyl]amino]-1H-benzimidazol-1-yl]methyl]-6-methyl-3-pyridinol, Fusion glycoprotein F0, TETRAETHYLENE GLYCOL
Authors:Roymans, D, De Bondt, H, Arnoult, E, Cummings, M.D, Van Vlijmen, H, Andries, K.
Deposit date:2009-11-16
Release date:2009-12-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Binding of a potent small-molecule inhibitor of six-helix bundle formation requires interactions with both heptad-repeats of the RSV fusion protein.
Proc.Natl.Acad.Sci.USA, 107, 2010
1LAM
DownloadVisualize
BU of 1lam by Molmil
LEUCINE AMINOPEPTIDASE (UNLIGATED)
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CARBONATE ION, LEUCINE AMINOPEPTIDASE, ...
Authors:Straeter, N, Lipscomb, W.N.
Deposit date:1995-08-11
Release date:1995-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Two-metal ion mechanism of bovine lens leucine aminopeptidase: active site solvent structure and binding mode of L-leucinal, a gem-diolate transition state analogue, by X-ray crystallography.
Biochemistry, 34, 1995
3WUT
DownloadVisualize
BU of 3wut by Molmil
Structure basis of inactivating cell abscission
Descriptor: Centrosomal protein of 55 kDa, GLYCEROL, Inactive serine/threonine-protein kinase TEX14
Authors:Kim, H.J, Matsuura, A, Lee, H.H.
Deposit date:2014-05-05
Release date:2015-07-15
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Structural and biochemical insights into the role of testis-expressed gene 14 (TEX14) in forming the stable intercellular bridges of germ cells.
Proc.Natl.Acad.Sci.USA, 112, 2015
3WUV
DownloadVisualize
BU of 3wuv by Molmil
Structure basis of inactivating cell abscission with chimera peptide 2
Descriptor: Centrosomal protein of 55 kDa, peptide from Programmed cell death 6-interacting protein
Authors:Kim, H.J, Matsuura, A, Lee, H.H.
Deposit date:2014-05-05
Release date:2015-07-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structural and biochemical insights into the role of testis-expressed gene 14 (TEX14) in forming the stable intercellular bridges of germ cells.
Proc.Natl.Acad.Sci.USA, 112, 2015
3WUU
DownloadVisualize
BU of 3wuu by Molmil
Structure basis of inactivating cell abscission with chimera peptide 1
Descriptor: Centrosomal protein of 55 kDa, TEX-14
Authors:Kim, H.J, Matsuura, A, Lee, H.H.
Deposit date:2014-05-05
Release date:2015-07-15
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (2.904 Å)
Cite:Structural and biochemical insights into the role of testis-expressed gene 14 (TEX14) in forming the stable intercellular bridges of germ cells.
Proc.Natl.Acad.Sci.USA, 112, 2015
5Z59
DownloadVisualize
BU of 5z59 by Molmil
Crystal structure of Tk-PTP in the inactive form
Descriptor: Protein-tyrosine phosphatase
Authors:Ku, B, Yun, H.Y, Kim, S.J.
Deposit date:2018-01-17
Release date:2018-06-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.703 Å)
Cite:Structural study reveals the temperature-dependent conformational flexibility of Tk-PTP, a protein tyrosine phosphatase from Thermococcus kodakaraensis KOD1
PLoS ONE, 13, 2018
5Z5B
DownloadVisualize
BU of 5z5b by Molmil
Crystal structure of Tk-PTP in the G95A mutant form
Descriptor: CHLORIDE ION, FORMIC ACID, Protein-tyrosine phosphatase
Authors:Ku, B, Yun, H.Y, Kim, S.J.
Deposit date:2018-01-17
Release date:2018-06-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural study reveals the temperature-dependent conformational flexibility of Tk-PTP, a protein tyrosine phosphatase from Thermococcus kodakaraensis KOD1
PLoS ONE, 13, 2018

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon