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6R1X
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BU of 6r1x by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 7a
Descriptor: Cereblon isoform 4, ZINC ION, ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-3-methyl-but-2-enamide
Authors:Heim, C, Hartmann, M.D.
Deposit date:2019-03-15
Release date:2019-08-07
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives.
J.Med.Chem., 62, 2019
6R1C
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BU of 6r1c by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 12a
Descriptor: 4-[[4-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyloxymethyl]phenyl]methylamino]-4-oxidanylidene-butanoic acid, ASPARTIC ACID, CHLORIDE ION, ...
Authors:Heim, C, Hartmann, M.D.
Deposit date:2019-03-14
Release date:2019-08-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives.
J.Med.Chem., 62, 2019
7R2Y
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BU of 7r2y by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with ATP resulting from short ATP soak, conflicting T-loop and C-loop with partial occupancy
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Membrane-associated protein slr1513, SODIUM ION
Authors:Selim, K.A, Albrecht, R, Hartmann, M.D.
Deposit date:2022-02-06
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R30
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BU of 7r30 by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with ADP and AMP resulting from ADP soak
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BICARBONATE ION, HEXAETHYLENE GLYCOL, ...
Authors:Selim, K.A, Albrecht, R, Hartmann, M.D.
Deposit date:2022-02-06
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R2Z
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BU of 7r2z by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with ATP and ADP resulting from long ATP soak
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Membrane-associated protein slr1513
Authors:Selim, K.A, Albrecht, R, Hartmann, M.D.
Deposit date:2022-02-06
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R32
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BU of 7r32 by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803, delta104 variant, in complex with ADP (co-crystal), tetragonal crystal form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Membrane-associated protein slr1513
Authors:Selim, K.A, Albrecht, R, Hartmann, M.D.
Deposit date:2022-02-06
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R31
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BU of 7r31 by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803, C105A+C110A variant, in complex with ATP (co-crystal), tetragonal crystal form
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, Membrane-associated protein slr1513, ...
Authors:Selim, K.A, Albrecht, R, Hartmann, M.D.
Deposit date:2022-02-06
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
2WFW
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BU of 2wfw by Molmil
Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases - The Arc domain structure
Descriptor: ARC
Authors:Djuranovic, S, Hartmann, M.D, Habeck, M, Ursinus, A, Zwickl, P, Martin, J, Lupas, A.N, Zeth, K.
Deposit date:2009-04-15
Release date:2009-05-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure and Activity of the N-Terminal Substrate Recognition Domains in Proteasomal Atpases.
Mol.Cell, 34, 2009
8RDS
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BU of 8rds by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8i
Descriptor: (5~{S})-3-(2-methoxyphenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Bischof, L, Hartmann, M.D.
Deposit date:2023-12-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode.
Eur.J.Med.Chem., 270, 2024
8RDQ
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BU of 8rdq by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8b
Descriptor: (5S)-3-(2,4-dichlorophenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Bischof, L, Hartmann, M.D.
Deposit date:2023-12-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode.
Eur.J.Med.Chem., 270, 2024
8RDP
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BU of 8rdp by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8a
Descriptor: (5~{S})-3-(2-chlorophenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Bischof, L, Hartmann, M.D.
Deposit date:2023-12-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode.
Eur.J.Med.Chem., 270, 2024
8RDR
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BU of 8rdr by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8g
Descriptor: (5~{S})-3-(2-nitrophenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Bischof, L, Hartmann, M.D.
Deposit date:2023-12-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode.
Eur.J.Med.Chem., 270, 2024
2VC8
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BU of 2vc8 by Molmil
Crystal structure of the LSm domain of human EDC3 (enhancer of decapping 3)
Descriptor: ENHANCER OF MRNA-DECAPPING PROTEIN 3
Authors:Tritschler, F, Hartmann, M.D, Weichenrieder, O.
Deposit date:2007-09-19
Release date:2007-10-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:A Divergent Sm Fold in Edc3 Proteins Mediates Dcp1 Binding and P-Body Targeting.
Mol.Cell.Biol., 27, 2007
8RDT
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BU of 8rdt by Molmil
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8j
Descriptor: (5~{S})-3-(2,3,4-trimethoxyphenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Bischof, L, Hartmann, M.D.
Deposit date:2023-12-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode.
Eur.J.Med.Chem., 270, 2024
8OKH
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BU of 8okh by Molmil
Crystal structure of Bdellovibrio bacteriovorus Bd1399
Descriptor: 1,2-ETHANEDIOL, DUF2807 domain-containing protein, GLYCEROL
Authors:Caulton, S.G, Lovering, A.L.
Deposit date:2023-03-28
Release date:2023-10-25
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Protein target highlights in CASP15: Analysis of models by structure providers.
Proteins, 91, 2023
8TLY
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BU of 8tly by Molmil
Human ASCC1 Phosphodiesterase/Ligase Domain
Descriptor: Activating signal cointegrator 1 complex subunit 1
Authors:Tsutakawa, S.E, Tainer, J.A, Arvai, A.S, Thapar, R.
Deposit date:2023-07-27
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:ASCC1 structures and bioinformatics reveal a novel helix-clasp-helix RNA-binding motif linked to a two-histidine phosphodiesterase.
J.Biol.Chem., 300, 2024
8TUK
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BU of 8tuk by Molmil
Alvinella ASCC1 KH and Phosphodiesterase/Ligase Domain
Descriptor: 1,2-ETHANEDIOL, Activating signal cointegrator 1 complex subunit 1, IMIDAZOLE
Authors:Tsutakawa, S.E, Tainer, J.A, Arvai, A.S, Chinnam, N.B.
Deposit date:2023-08-16
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:ASCC1 structures and bioinformatics reveal a novel helix-clasp-helix RNA-binding motif linked to a two-histidine phosphodiesterase.
J.Biol.Chem., 300, 2024
8SMQ
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BU of 8smq by Molmil
Crystal Structure of the N-terminal Domain of the Cryptic Surface Protein (CD630_25440) from Clostridium difficile.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Minasov, G, Shuvalova, L, Brunzelle, J.S, Kiryukhina, O, Wawrzak, Z, Satchell, K.J.F, Center for Structural Biology of Infectious Diseases (CSBID), Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2023-04-26
Release date:2023-05-10
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Protein target highlights in CASP15: Analysis of models by structure providers.
Proteins, 91, 2023
2XQH
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BU of 2xqh by Molmil
Crystal structure of an immunoglobulin-binding fragment of the trimeric autotransporter adhesin EibD
Descriptor: CHLORIDE ION, IMMUNOGLOBULIN-BINDING PROTEIN EIBD
Authors:Leo, J.C, Lyskowski, A, Hartmann, M, Schwarz, H, Linke, D, Lupas, A.N, Goldman, A.
Deposit date:2010-09-02
Release date:2011-07-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:The Structure of E. Coli Igg-Binding Protein D Suggests a General Model for Bending and Binding in Trimeric Autotransporter Adhesins.
Structure, 19, 2011
6SDA
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BU of 6sda by Molmil
Bd2924 C10 acyl-coenzymeA bound form
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Probable acyl-CoA dehydrogenase, decanoyl-CoA
Authors:Lovering, A.L, Harding, C.J.
Deposit date:2019-07-26
Release date:2019-09-11
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Target highlights in CASP13: Experimental target structures through the eyes of their authors.
Proteins, 87, 2019
6SD8
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BU of 6sd8 by Molmil
Bd2924 apo-form
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Probable acyl-CoA dehydrogenase
Authors:Lovering, A.L, Harding, C.J.
Deposit date:2019-07-26
Release date:2019-09-11
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Target highlights in CASP13: Experimental target structures through the eyes of their authors.
Proteins, 87, 2019
7MHU
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BU of 7mhu by Molmil
Sialidase24 apo
Descriptor: Exo-alpha-sialidase
Authors:Rees, S.D, Chang, G.A.
Deposit date:2021-04-15
Release date:2022-02-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Computational models in the service of X-ray and cryo-electron microscopy structure determination.
Proteins, 89, 2021
7M6B
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BU of 7m6b by Molmil
The Crystal Structure of Mcbe1
Descriptor: 1,2-ETHANEDIOL, S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLMETHIONINE, ...
Authors:Alahuhta, P.M, Lunin, V.V.
Deposit date:2021-03-25
Release date:2021-04-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Target highlights in CASP14: Analysis of models by structure providers.
Proteins, 89, 2021
7OC9
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BU of 7oc9 by Molmil
Structure of Bdellovibrio bacteriovorus Bd0675
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Bd0675, GLYCEROL, ...
Authors:Lovering, A.L, Valdivia-Delgado, M.
Deposit date:2021-04-26
Release date:2021-05-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Target highlights in CASP14: Analysis of models by structure providers.
Proteins, 89, 2021
6GDX
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BU of 6gdx by Molmil
Structure of CutA from Synechococcus elongatus PCC7942 complexed with 3 molecules of Bis-Tris
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Periplasmic divalent cation tolerance protein
Authors:Tremino, L, Rubio, V.
Deposit date:2018-04-24
Release date:2019-05-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 2020

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