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2FE9
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BU of 2fe9 by Molmil
Solution structure of the Vts1 SAM domain in the presence of RNA
Descriptor: Protein VTS1
Authors:Edwards, T.A, Butterwick, J.A, Palmer, A.G, Aggarwal, A.K.
Deposit date:2005-12-15
Release date:2006-01-24
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Solution Structure of the Vts1 SAM Domain in the Presence of RNA.
J.Mol.Biol., 356, 2006
8V2X
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BU of 8v2x by Molmil
Crystal Structure of the reconstruction of the worst case of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by bayesian inference
Descriptor: Triosephosphate isomerase
Authors:Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A.
Deposit date:2023-11-24
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
8V09
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BU of 8v09 by Molmil
Crystal Structure of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by bayesian inference with PGH
Descriptor: ACETIC ACID, FORMIC ACID, PHOSPHOGLYCOLOHYDROXAMIC ACID, ...
Authors:Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A.
Deposit date:2023-11-17
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
8V2W
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BU of 8v2w by Molmil
Crystal Structure of the ancestral triosephosphate isomerase reconstruction of the last opisthokont common ancestor obtained by Bayesian inference
Descriptor: GLYCEROL, Triosephosphate isomerase
Authors:Perez-Nino, J.A, Rodriguez-Romero, A, Guerra, Y, Fernandez-Velasco, D.A.
Deposit date:2023-11-24
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
8TCO
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BU of 8tco by Molmil
HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CS2it1p2_F7K Fab heavy chain, ...
Authors:Goldsmith, J.A, McLellan, J.S.
Deposit date:2023-07-02
Release date:2023-08-09
Last modified:2024-08-14
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Single-cell analysis of memory B cells from top neutralizers reveals multiple sites of vulnerability within HCMV Trimer and Pentamer.
Immunity, 56, 2023
2CW6
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BU of 2cw6 by Molmil
Crystal Structure of Human HMG-CoA Lyase: Insights into Catalysis and the Molecular Basis for Hydroxymethylglutaric Aciduria
Descriptor: 3-HYDROXYPENTANEDIOIC ACID, Hydroxymethylglutaryl-CoA lyase, mitochondrial, ...
Authors:Fu, Z, Runquist, J.A, Hunt, J.F, Miziorko, H.M, Kim, J.-J.P.
Deposit date:2005-06-17
Release date:2005-12-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of human 3-hydroxy-3-methylglutaryl-CoA Lyase: insights into catalysis and the molecular basis for hydroxymethylglutaric aciduria
J.Biol.Chem., 281, 2006
8T5X
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BU of 8t5x by Molmil
Probing the dissociation pathway of a kinetically labile transthyretin mutant (A25T)
Descriptor: Transthyretin
Authors:Ferguson, J.A, Sun, X, Leach, B.I, Stanfield, R.L, Dyson, H.J, Wright, P.E.
Deposit date:2023-06-14
Release date:2023-08-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Probing the Dissociation Pathway of a Kinetically Labile Transthyretin Mutant.
J.Am.Chem.Soc., 146, 2024
6PRU
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BU of 6pru by Molmil
Photoconvertible crystals of PixJ from Thermosynechococcus elongatus
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Burgie, E.S, Clinger, J.A, Miller, M.D, Phillips Jr, G.N, Vierstra, R.D.
Deposit date:2019-07-11
Release date:2019-12-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.539 Å)
Cite:Photoreversible interconversion of a phytochrome photosensory module in the crystalline state.
Proc.Natl.Acad.Sci.USA, 117, 2020
8SPK
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BU of 8spk by Molmil
Crystal structure of Antarctic PET-degrading enzyme
Descriptor: Lipase 1, MALONATE ION
Authors:Furtado, A.A, Blazquez-Sanchez, P, Grinen, A, Vargas, J.A, Leonardo, D.A, Sculaccio, S.A, Pereira, H.M, Diez, B, Garratt, R.C, Ramirez-Sarmiento, C.A.
Deposit date:2023-05-03
Release date:2023-08-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Engineering the catalytic activity of an Antarctic PET-degrading enzyme by loop exchange.
Protein Sci., 32, 2023
6PQK
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BU of 6pqk by Molmil
Cryogenic crystal structure of barnase A43C/S80C bound to barstar C40A/S59C/A67C/C82A
Descriptor: 1,2-ETHANEDIOL, Barstar, PHOSPHATE ION, ...
Authors:Caro, J.A, Djanto, V, Wand, A.J.
Deposit date:2019-07-09
Release date:2020-07-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Targeting conformational entropy to modulate binding affinity
To Be Published
8V0A
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BU of 8v0a by Molmil
Crystal Structure of the worst case of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by maximum likelihood with PGH
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, Triosephosphate isomerase
Authors:Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A.
Deposit date:2023-11-17
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
6P7N
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BU of 6p7n by Molmil
Cryo-EM structure of LbCas12a-crRNA: AcrVA4 (2:2 complex)
Descriptor: Cas12a, MAGNESIUM ION, anti-CRISPR VA4, ...
Authors:Knott, G.J, Liu, J.J, Doudna, J.A.
Deposit date:2019-06-06
Release date:2019-08-21
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a.
Elife, 8, 2019
2FQQ
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BU of 2fqq by Molmil
Crystal structure of human caspase-1 (Cys285->Ala, Cys362->Ala, Cys364->Ala, Cys397->Ala) in complex with 1-methyl-3-trifluoromethyl-1H-thieno[2,3-c]pyrazole-5-carboxylic acid (2-mercapto-ethyl)-amide
Descriptor: 1-METHYL-3-TRIFLUOROMETHYL-1H-THIENO[2,3-C]PYRAZOLE-5-CARBOXYLIC ACID (2-MERCAPTO-ETHYL)-AMIDE, Caspase-1
Authors:Scheer, J.M, Wells, J.A, Romanowski, M.J.
Deposit date:2006-01-18
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A common allosteric site and mechanism in caspases
Proc.Natl.Acad.Sci.USA, 103, 2006
2FTC
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BU of 2ftc by Molmil
Structural Model for the Large Subunit of the Mammalian Mitochondrial Ribosome
Descriptor: 39S ribosomal protein L11, mitochondrial, 39S ribosomal protein L12, ...
Authors:Mears, J.A, Sharma, M.R, Gutell, R.R, Richardson, P.E, Agrawal, R.K, Harvey, S.C.
Deposit date:2006-01-24
Release date:2006-04-11
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12.1 Å)
Cite:A Structural Model for the Large Subunit of the Mammalian Mitochondrial Ribosome
J.Mol.Biol., 358, 2006
2FWQ
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BU of 2fwq by Molmil
Reduced enolate chromophore intermediate for Y66H GFP variant
Descriptor: Green fluorescent protein, MAGNESIUM ION
Authors:Barondeau, D.P, Tainer, J.A, Getzoff, E.D.
Deposit date:2006-02-02
Release date:2006-03-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural evidence for an enolate intermediate in GFP fluorophore biosynthesis.
J.Am.Chem.Soc., 128, 2006
3N5F
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BU of 3n5f by Molmil
Crystal Structure of L-N-carbamoylase from Geobacillus stearothermophilus CECT43
Descriptor: CACODYLATE ION, COBALT (II) ION, ISOPROPYL ALCOHOL, ...
Authors:Garcia-Pino, A, Martinez-Rodriguez, S, Gavira, J.A.
Deposit date:2010-05-25
Release date:2011-05-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Mutational and structural analysis of L-N-carbamoylase reveals new insights into a peptidase m20/m25/m40 family member.
J.Bacteriol., 194, 2012
2FFL
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BU of 2ffl by Molmil
Crystal Structure of Dicer from Giardia intestinalis
Descriptor: Dicer, MANGANESE (II) ION
Authors:Doudna, J.A, MacRae, I.J, Adams, P.D.
Deposit date:2005-12-19
Release date:2006-01-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:Structural Basis of Double-Stranded RNA Processing by Dicer
Science, 311, 2006
2FLJ
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BU of 2flj by Molmil
Fatty acid binding protein from locust flight muscle in complex with oleate
Descriptor: Fatty acid-binding protein, OLEIC ACID
Authors:Luecke, C, Qiao, Y, van Moerkerk, H.T.B, Veerkamp, J.H, Hamilton, J.A.
Deposit date:2006-01-06
Release date:2006-05-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Fatty-acid-binding protein from the flight muscle of Locusta migratoria: evolutionary variations in fatty acid binding.
Biochemistry, 45, 2006
8UVT
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BU of 8uvt by Molmil
Structure of the insect gustatory receptor Gr9 from Bombyx mori
Descriptor: Gustatory receptor
Authors:Gomes, J.V, Butterwick, J.A.
Deposit date:2023-11-04
Release date:2024-03-20
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:The molecular basis of sugar detection by an insect taste receptor.
Nature, 629, 2024
2FAT
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BU of 2fat by Molmil
An anti-urokinase plasminogen activator receptor (UPAR) antibody: Crystal structure and binding epitope
Descriptor: FAB ATN-615, heavy chain, light chain
Authors:Li, Y, Parry, G, Shi, X, Chen, L, Callahan, J.A, Mazar, A.P, Huang, M.
Deposit date:2005-12-07
Release date:2006-11-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:An anti-urokinase plasminogen activator receptor (uPAR) antibody: crystal structure and binding epitope
J.Mol.Biol., 365, 2007
2FCH
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BU of 2fch by Molmil
Crystal Structure of Thioredoxin Mutant G74S
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Thioredoxin 1
Authors:Gavira, J.A, Perez-Jimenez, R, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
Deposit date:2005-12-12
Release date:2005-12-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Thioredoxin Mutant G74S
To be Published
8UVU
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BU of 8uvu by Molmil
Structure of the insect gustatory receptor Gr9 from Bombyx mori in complex with D-fructose
Descriptor: Gustatory receptor, beta-D-fructofuranose, beta-D-fructopyranose
Authors:Gomes, J.V, Butterwick, J.A.
Deposit date:2023-11-04
Release date:2024-03-20
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The molecular basis of sugar detection by an insect taste receptor.
Nature, 629, 2024
2FSY
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BU of 2fsy by Molmil
Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV
Descriptor: major capsid protein
Authors:Gan, L, Speir, J.A, Conway, J.F, Lander, G, Cheng, N, Firek, B.A, Hendrix, R.W, Duda, R.L, Liljas, L, Johnson, J.E.
Deposit date:2006-01-23
Release date:2006-02-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Capsid Conformational Sampling in HK97 Maturation Visualized by X-Ray Crystallography and Cryo-EM.
Structure, 14, 2006
3N37
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BU of 3n37 by Molmil
Ribonucleotide Reductase Dimanganese(II)-NrdF from Escherichia coli
Descriptor: GLYCEROL, MANGANESE (II) ION, Ribonucleoside-diphosphate reductase 2 subunit beta
Authors:Boal, A.K, Cotruvo Jr, J.A, Stubbe, J, Rosenzweig, A.C.
Deposit date:2010-05-19
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis for activation of class Ib ribonucleotide reductase.
Science, 329, 2010
2FZL
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BU of 2fzl by Molmil
Structure of C-terminal domain of Archaeoglobus fulgidus XPB
Descriptor: DNA repair protein RAD25, XPB, ISOPROPYL ALCOHOL
Authors:Fan, L, Arvai, A.S, Tainer, J.A.
Deposit date:2006-02-09
Release date:2006-04-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair
Mol.Cell, 22, 2006

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PDB entries from 2024-10-16

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