Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4CKR
DownloadVisualize
BU of 4ckr by Molmil
Crystal structure of the human DDR1 kinase domain in complex with DDR1-IN-1
Descriptor: 1,2-ETHANEDIOL, 4-[(4-ethylpiperazin-1-yl)methyl]-n-{4-methyl-3-[(2-oxo-2,3-dihydro-1h-indol-5-yl)oxy]phenyl}-3-(trifluoromethyl)benzamide, EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1
Authors:Canning, P, Elkins, J.M, Goubin, S, Mahajan, P, Krojer, T, Newman, J.A, Dixon-Clarke, S, Chaikuad, A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.
Deposit date:2014-01-07
Release date:2014-01-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of a Potent and Selective Ddr1 Receptor Tyrosine Kinase Inhibitor.
Acs Chem.Biol., 8, 2013
8HEJ
DownloadVisualize
BU of 8hej by Molmil
Crystal structure of Transthyretin in complex with a covalent inhibitor trans-styrylpyrazole
Descriptor: 2,4,6-trifluorobenzaldehyde, 2,6-dibromo-4-[(E)-2-(3,5-dimethyl-1H-pyrazol-4-yl)ethenyl]phenol, Transthyretin
Authors:Kim, H, Choi, S, Lee, C.
Deposit date:2022-11-08
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystal structure of Transthyretin in complex with a covalent inhibitor trans-styrylpyrazole
To Be Published
2MSY
DownloadVisualize
BU of 2msy by Molmil
Solution structure of Hox homeodomain
Descriptor: Homeobox protein Hox-C9
Authors:Kim, H, Park, S, Han, J, Lee, B.
Deposit date:2014-08-11
Release date:2015-09-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural insight into the interaction between the Hox and HMGB1 and understanding of the HMGB1-enhancing effect of Hox-DNA binding.
Biochim.Biophys.Acta, 1854, 2015
3OUH
DownloadVisualize
BU of 3ouh by Molmil
PHD2-R127 with JNJ41536014
Descriptor: 1-(5-chloro-6-fluoro-1H-benzimidazol-2-yl)-1H-pyrazole-4-carboxylic acid, Egl nine homolog 1, FE (II) ION, ...
Authors:Kim, H, Clark, R.
Deposit date:2010-09-14
Release date:2010-12-01
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Benzimidazole-2-pyrazole HIF Prolyl 4-Hydroxylase Inhibitors as Oral Erythropoietin Secretagogues.
ACS Med Chem Lett, 1, 2010
7P80
DownloadVisualize
BU of 7p80 by Molmil
Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compressed state)
Descriptor: ADEP2, ATP-dependent Clp protease proteolytic subunit
Authors:Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K.
Deposit date:2021-07-21
Release date:2022-06-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
7P81
DownloadVisualize
BU of 7p81 by Molmil
Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compact state)
Descriptor: ADEP2, ATP-dependent Clp protease proteolytic subunit
Authors:Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K.
Deposit date:2021-07-21
Release date:2022-06-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
2G97
DownloadVisualize
BU of 2g97 by Molmil
Crystal Structure of Visfatin/Pre-B Cell Colony Enhancing Factor 1/Nicotinamide Phosphoribosyltransferase In Complex with the Specific Inhibitor FK-866
Descriptor: (2E)-N-{4-[1-(benzenecarbonyl)piperidin-4-yl]butyl}-3-(pyridin-3-yl)prop-2-enamide, Nicotinamide phosphoribosyltransferase
Authors:Kim, M.-K, Eom, S.H.
Deposit date:2006-03-05
Release date:2006-08-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of Visfatin/Pre-B Cell Colony-enhancing Factor 1/Nicotinamide Phosphoribosyltransferase, Free and in Complex with the Anti-cancer Agent FK-866
J.Mol.Biol., 362, 2006
8X9E
DownloadVisualize
BU of 8x9e by Molmil
Crystal structure of CO dehydrogenase mutant with increased affinity for electron mediators in low PEG concentration
Descriptor: 1,2-ETHANEDIOL, Carbon monoxide dehydrogenase 2, FE (III) ION, ...
Authors:Lee, H.H, Heo, Y, Yoon, H.J, Kim, S.M, Kong, S.Y.
Deposit date:2023-11-30
Release date:2024-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase's affinity.
Nat Commun, 15, 2024
8X9G
DownloadVisualize
BU of 8x9g by Molmil
Crystal structure of CO dehydrogenase mutant in complex with BV
Descriptor: 1-(phenylmethyl)-4-[1-(phenylmethyl)pyridin-1-ium-4-yl]pyridin-1-ium, Carbon monoxide dehydrogenase 2, FE(4)-NI(1)-S(4) CLUSTER, ...
Authors:Lee, H.H, Heo, Y, Yoon, H.J, Kim, S.M, Kong, S.Y.
Deposit date:2023-11-30
Release date:2024-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase's affinity.
Nat Commun, 15, 2024
8X9F
DownloadVisualize
BU of 8x9f by Molmil
Crystal structure of CO dehydrogenase mutant in complex with EV
Descriptor: 1,2-ETHANEDIOL, 1-ethyl-4-(1-ethylpyridin-1-ium-4-yl)pyridin-1-ium, Carbon monoxide dehydrogenase 2, ...
Authors:Lee, H.H, Heo, Y, Yoon, H.J, Kim, S.M, Kong, S.Y.
Deposit date:2023-11-30
Release date:2024-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase's affinity.
Nat Commun, 15, 2024
8X9D
DownloadVisualize
BU of 8x9d by Molmil
Crystal structure of CO dehydrogenase mutant with increased affinity for electron mediators in high PEG concentration
Descriptor: Carbon monoxide dehydrogenase 2, FE (III) ION, FE(4)-NI(1)-S(4) CLUSTER, ...
Authors:Lee, H.H, Heo, Y, Yoon, H.J, Kim, S.M, Kong, S.Y.
Deposit date:2023-11-30
Release date:2024-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase's affinity.
Nat Commun, 15, 2024
8X9H
DownloadVisualize
BU of 8x9h by Molmil
Crystal structure of CO dehydrogenase mutant (F41C)
Descriptor: Carbon monoxide dehydrogenase 2, FE (III) ION, FE(4)-NI(1)-S(4) CLUSTER, ...
Authors:Lee, H.H, Heo, Y, Yoon, H.J, Kim, S.M, Kong, S.Y.
Deposit date:2023-11-30
Release date:2024-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase's affinity.
Nat Commun, 15, 2024
4UIP
DownloadVisualize
BU of 4uip by Molmil
The complex structure of extracellular domain of EGFR with Repebody (rAC1).
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, EPIDERMAL GROWTH FACTOR RECEPTOR, ...
Authors:Kang, Y.J, Cha, Y.J, Cho, H.S, Lee, J.J, Kim, H.S.
Deposit date:2015-03-31
Release date:2015-11-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Enzymatic Prenylation and Oxime Ligation for the Synthesis of Stable and Homogeneous Protein-Drug Conjugates for Targeted Therapy.
Angew.Chem.Int.Ed.Engl., 54, 2015
5X42
DownloadVisualize
BU of 5x42 by Molmil
Structure of DotL(590-659)-DotN derived from Legionella pneumophila
Descriptor: DotN, IcmJ (DotN), IcmO (DotL), ...
Authors:Kwak, M.J, Kim, J.D, Oh, B.H.
Deposit date:2017-02-09
Release date:2017-06-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Architecture of the type IV coupling protein complex of Legionella pneumophila
Nat Microbiol, 2, 2017
3KPE
DownloadVisualize
BU of 3kpe by Molmil
Solution structure of the respiratory syncytial virus (RSV)six-helix bundle complexed with TMC353121, a small-moleucule inhibitor of RSV
Descriptor: 2-[[6-[[[2-(3-hydroxypropyl)-5-methylphenyl]amino]methyl]-2-[[3-(4-morpholinyl)propyl]amino]-1H-benzimidazol-1-yl]methyl]-6-methyl-3-pyridinol, Fusion glycoprotein F0, TETRAETHYLENE GLYCOL
Authors:Roymans, D, De Bondt, H, Arnoult, E, Cummings, M.D, Van Vlijmen, H, Andries, K.
Deposit date:2009-11-16
Release date:2009-12-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Binding of a potent small-molecule inhibitor of six-helix bundle formation requires interactions with both heptad-repeats of the RSV fusion protein.
Proc.Natl.Acad.Sci.USA, 107, 2010
6L39
DownloadVisualize
BU of 6l39 by Molmil
Cytochrome P450 107G1 (RapN)
Descriptor: Cytochrome P450, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, ...
Authors:Kim, V.C, Kim, D.H, Lim, Y.R, Lee, I.H, Lee, J.H, Kang, L.W.
Deposit date:2019-10-10
Release date:2020-09-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Structural insights into CYP107G1 from rapamycin-producing Streptomyces rapamycinicus.
Arch.Biochem.Biophys., 692, 2020
6L3A
DownloadVisualize
BU of 6l3a by Molmil
Cytochrome P450 107G1 (RapN) with everolimus
Descriptor: Cytochrome P450, Everolimus, PROTOPORPHYRIN IX CONTAINING FE
Authors:Km, V.C, Kim, D.H, Lim, Y.R, Lee, I.H, Lee, J.H, Kang, L.W.
Deposit date:2019-10-10
Release date:2020-09-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insights into CYP107G1 from rapamycin-producing Streptomyces rapamycinicus.
Arch.Biochem.Biophys., 692, 2020
3U5P
DownloadVisualize
BU of 3u5p by Molmil
Crystal structure of the complex of TRIM33 PHD-Bromo and H3(1-28)K9me3K14acK18acK23ac histone peptide
Descriptor: E3 ubiquitin-protein ligase TRIM33, Histone H3.1, ZINC ION
Authors:Wang, Z, Patel, D.J.
Deposit date:2011-10-11
Release date:2012-01-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A poised chromatin platform for TGF-beta access to master regulators
Cell(Cambridge,Mass.), 147, 2011
3U5N
DownloadVisualize
BU of 3u5n by Molmil
Crystal structure of the complex of TRIM33 PHD-Bromo and H3(1-20)K9me3K14ac histone peptide
Descriptor: E3 ubiquitin-protein ligase TRIM33, Histone H3.1, ZINC ION
Authors:Wang, Z, Patel, D.J.
Deposit date:2011-10-11
Release date:2012-01-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A Poised Chromatin Platform for TGF-beta access to master regulators
Cell(Cambridge,Mass.), 147, 2011
8IVU
DownloadVisualize
BU of 8ivu by Molmil
Crystal Structure of Human NAMPT in complex with A4276
Descriptor: N-[[4-(6-methyl-1,3-benzoxazol-2-yl)phenyl]methyl]pyridine-3-carboxamide, Nicotinamide phosphoribosyltransferase, PHOSPHATE ION
Authors:Kang, B.G, Cha, S.S.
Deposit date:2023-03-28
Release date:2023-10-11
Method:X-RAY DIFFRACTION (2.09000921 Å)
Cite:Discovery of a novel NAMPT inhibitor that selectively targets NAPRT-deficient EMT-subtype cancer cells and alleviates chemotherapy-induced peripheral neuropathy.
Theranostics, 13, 2023
6LHU
DownloadVisualize
BU of 6lhu by Molmil
High resolution structure of FANCA C-terminal domain (CTD)
Descriptor: Fanconi anemia complementation group A
Authors:Jeong, E, Lee, S, Shin, J, Kim, Y, Kim, J, Scharer, O, Kim, Y, Kim, H, Cho, Y.
Deposit date:2019-12-10
Release date:2020-03-25
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Structural basis of the fanconi anemia-associated mutations within the FANCA and FANCG complex.
Nucleic Acids Res., 48, 2020
6LHW
DownloadVisualize
BU of 6lhw by Molmil
Structure of N-terminal and C-terminal domains of FANCA
Descriptor: Fanconi anemia complementation group A
Authors:Jeong, E, Lee, S, Shin, J, Kim, Y, Kim, J, Scharer, O, Kim, Y, Kim, H, Cho, Y.
Deposit date:2019-12-10
Release date:2020-03-25
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.84 Å)
Cite:Structural basis of the fanconi anemia-associated mutations within the FANCA and FANCG complex.
Nucleic Acids Res., 48, 2020
6LHS
DownloadVisualize
BU of 6lhs by Molmil
High resolution structure of FANCA C-terminal domain (CTD)
Descriptor: Fanconi anemia complementation group A
Authors:Jeong, E, Lee, S, Shin, J, Kim, Y, Scharer, O, Kim, Y, Kim, H, Cho, Y.
Deposit date:2019-12-10
Release date:2020-03-25
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structural basis of the fanconi anemia-associated mutations within the FANCA and FANCG complex.
Nucleic Acids Res., 48, 2020
6LHV
DownloadVisualize
BU of 6lhv by Molmil
Structure of FANCA and FANCG Complex
Descriptor: Fanconi anemia complementation group A, Fanconi anemia complementation group G
Authors:Jeong, E, Lee, S, Shin, J, Kim, Y, Scharer, O, Kim, Y, Kim, H, Cho, Y.
Deposit date:2019-12-10
Release date:2020-03-25
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.59 Å)
Cite:Structural basis of the fanconi anemia-associated mutations within the FANCA and FANCG complex.
Nucleic Acids Res., 48, 2020
6YEJ
DownloadVisualize
BU of 6yej by Molmil
Cryo-EM structure of the Full-length disease type human Huntingtin
Descriptor: Huntingtin
Authors:Tame, G, Jung, T, Dal Perraro, M, Hebert, H, Song, J.
Deposit date:2020-03-24
Release date:2020-12-16
Method:ELECTRON MICROSCOPY (18.200001 Å)
Cite:The Polyglutamine Expansion at the N-Terminal of Huntingtin Protein Modulates the Dynamic Configuration and Phosphorylation of the C-Terminal HEAT Domain.
Structure, 28, 2020

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon