Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4B9V
DownloadVisualize
BU of 4b9v by Molmil
Structure of the high fidelity DNA polymerase I with extending from an oxidative formamidopyrimidine-dG DNA lesion -dA basepair.
Descriptor: 5'-D(*CP*AP*TP*FOXP*AP*GP*AP*GP*TP*CP*AP*GP*GP*CP*TP)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*TP*AP*AP)-3', DNA POLYMERASE, ...
Authors:Gehrke, T.H, Lischke, U, Arnold, S, Schneider, S, Carell, T.
Deposit date:2012-09-06
Release date:2013-04-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions.
Nat.Chem.Biol., 9, 2013
4B9N
DownloadVisualize
BU of 4b9n by Molmil
Structure of the high fidelity DNA polymerase I correctly bypassing the oxidative formamidopyrimidine-dA DNA lesion.
Descriptor: 5'-D(*CP*AP*AP*(FAX)*AP*GP*AP*GP*TP*CP*AP*GP*GP*CP*TP)-3', 5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*TP*TP*TP*TP)-3', DNA POLYMERASE, ...
Authors:Gehrke, T.H, Lischke, U, Arnold, S, Schneider, S, Carell, T.
Deposit date:2012-09-05
Release date:2013-04-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions.
Nat.Chem.Biol., 9, 2013
4B9L
DownloadVisualize
BU of 4b9l by Molmil
Structure of the high fidelity DNA polymerase I with the oxidative formamidopyrimidine-dA DNA lesion in the pre-insertion site.
Descriptor: 5'-D(*CP*AP*GP*FAX*AP*GP*AP*GP*TP*CP*AP*GP*GP*CP*TP)-3', 5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*TP)-3', DNA POLYMERASE I, ...
Authors:Gehrke, T.H, Lischke, U, Arnold, S, Schneider, S, Carell, T.
Deposit date:2012-09-05
Release date:2013-04-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions.
Nat.Chem.Biol., 9, 2013
4C5N
DownloadVisualize
BU of 4c5n by Molmil
Structure of the pyridoxal kinase from Staphylococcus aureus in complex with AMP-PCP and pyridoxal
Descriptor: 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE, 4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Nodwell, M, Alte, F, Sieber, S.A, Schneider, S.
Deposit date:2013-09-12
Release date:2014-03-19
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A Subfamily of Bacterial Ribokinases Utilizes a Hemithioacetal for Pyridoxal Phosphate Salvage.
J.Am.Chem.Soc., 136, 2014
4C5K
DownloadVisualize
BU of 4c5k by Molmil
Structure of the pyridoxal kinase from Staphylococcus aureus in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, PHOSPHOMETHYLPYRIMIDINE KINASE, SULFATE ION
Authors:Nodwell, M, Alte, F, Sieber, S.A, Schneider, S.
Deposit date:2013-09-12
Release date:2014-03-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Subfamily of Bacterial Ribokinases Utilizes a Hemithioacetal for Pyridoxal Phosphate Salvage.
J.Am.Chem.Soc., 136, 2014
4C5J
DownloadVisualize
BU of 4c5j by Molmil
Structure of the pyridoxal kinase from Staphylococcus aureus
Descriptor: PHOSPHOMETHYLPYRIMIDINE KINASE, SULFATE ION
Authors:Nodwell, M, Alte, F, Sieber, S.A, Schneider, S.
Deposit date:2013-09-12
Release date:2014-03-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Subfamily of Bacterial Ribokinases Utilizes a Hemithioacetal for Pyridoxal Phosphate Salvage.
J.Am.Chem.Soc., 136, 2014
4C5L
DownloadVisualize
BU of 4c5l by Molmil
Structure of the pyridoxal kinase from Staphylococcus aureus in complex with pyridoxal
Descriptor: 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE, 4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol, PHOSPHOMETHYLPYRIMIDINE KINASE, ...
Authors:Nodwell, M, Alte, F, Sieber, S.A, Schneider, S.
Deposit date:2013-09-12
Release date:2014-03-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A Subfamily of Bacterial Ribokinases Utilizes a Hemithioacetal for Pyridoxal Phosphate Salvage.
J.Am.Chem.Soc., 136, 2014
4C5M
DownloadVisualize
BU of 4c5m by Molmil
Structure of the pyridoxal kinase from Staphylococcus aureus in complex with AMP-PCP
Descriptor: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, PHOSPHOMETHYLPYRIMIDINE KINASE, SULFATE ION
Authors:Nodwell, M, Alte, F, Sieber, S.A, Schneider, S.
Deposit date:2013-09-12
Release date:2014-03-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Subfamily of Bacterial Ribokinases Utilizes a Hemithioacetal for Pyridoxal Phosphate Salvage.
J.Am.Chem.Soc., 136, 2014
4CH5
DownloadVisualize
BU of 4ch5 by Molmil
Structure of pyrrolysyl-tRNA synthetase in complex with adenylated propionyl lysine
Descriptor: (S)-2-amino-6-propionamidohexanoic(((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric) anhydride, 1,2-ETHANEDIOL, MAGNESIUM ION, ...
Authors:Fluegel, V, Vrabel, M, Schneider, S.
Deposit date:2013-11-28
Release date:2014-03-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for the Site-Specific Incorporation of Lysine Derivatives Into Proteins.
Plos One, 9, 2014
4CH3
DownloadVisualize
BU of 4ch3 by Molmil
Structure of pyrrolysyl-tRNA synthetase in complex with adenylated butyryl lysine
Descriptor: 1,2-ETHANEDIOL, 5'-O-({[(2R)-2-amino-6-(butanoylamino)hexanoyl]oxy}phosphinato)adenosine, MAGNESIUM ION, ...
Authors:Fluegel, V, Vrabel, M, Schneider, S.
Deposit date:2013-11-28
Release date:2014-03-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural Basis for the Site-Specific Incorporation of Lysine Derivatives Into Proteins.
Plos One, 9, 2014
4CH4
DownloadVisualize
BU of 4ch4 by Molmil
Structure of pyrrolysyl-tRNA synthetase in complex with adenylated crotonyl lysine
Descriptor: 1,2-ETHANEDIOL, 5'-O-[({(2R)-2-amino-6-[(2E)-but-2-enoylamino]hexanoyl}oxy)phosphinato]adenosine, MAGNESIUM ION, ...
Authors:Fluegel, V, Vrabel, M, Schneider, S.
Deposit date:2013-11-28
Release date:2014-03-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Structural Basis for the Site-Specific Incorporation of Lysine Derivatives Into Proteins.
Plos One, 9, 2014
4CH6
DownloadVisualize
BU of 4ch6 by Molmil
Structure of pyrrolysyl-tRNA synthetase in complex with adenylated propargyloxycarbonyl lysine
Descriptor: (S)-2-amino-6-(((prop-2-yn-1-yloxy)carbonyl)amino)hexanoic (((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric)anhydride, 1,2-ETHANEDIOL, MAGNESIUM ION, ...
Authors:Fluegel, V, Vrabel, M, Schneider, S.
Deposit date:2013-11-28
Release date:2014-03-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Basis for the Site-Specific Incorporation of Lysine Derivatives Into Proteins.
Plos One, 9, 2014
3CWN
DownloadVisualize
BU of 3cwn by Molmil
Escherichia coli transaldolase b mutant f178y
Descriptor: SULFATE ION, Transaldolase B
Authors:Sandalova, T, Schneider, G, Samland, A.
Deposit date:2008-04-22
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Replacement of a Phenylalanine by a Tyrosine in the Active Site Confers Fructose-6-phosphate Aldolase Activity to the Transaldolase of Escherichia coli and Human Origin.
J.Biol.Chem., 283, 2008
8OVS
DownloadVisualize
BU of 8ovs by Molmil
Crystal structure of YeGT glycosyltransferase with bound UDP
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CADMIUM ION, ...
Authors:Wirth, C, Hunte, C.
Deposit date:2023-04-26
Release date:2024-05-22
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.123 Å)
Cite:Tyrosine-modifying glycosylation by Yersinia effectors.
J.Biol.Chem., 300, 2024
8OVT
DownloadVisualize
BU of 8ovt by Molmil
Crystal structure of the ligand-free YeGT glycosyltransferase
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, YeGT glycosyltransferase
Authors:Wirth, C, Hunte, C.
Deposit date:2023-04-26
Release date:2024-05-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Tyrosine-modifying glycosylation by Yersinia effectors.
J.Biol.Chem., 300, 2024
4S2C
DownloadVisualize
BU of 4s2c by Molmil
Covalent complex of E. coli transaldolase TalB with fructose-6-phosphate
Descriptor: 1,2-ETHANEDIOL, FRUCTOSE -6-PHOSPHATE, Transaldolase B
Authors:Stellmacher, L, Sandalova, T, Schneider, G, Sprenger, G.A, Samland, A.K.
Deposit date:2015-01-20
Release date:2016-01-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel mode of inhibition by D-tagatose 6-phosphate through a Heyns rearrangement in the active site of transaldolase B variants.
Acta Crystallogr D Struct Biol, 72, 2016
4S2B
DownloadVisualize
BU of 4s2b by Molmil
Covalent complex of E. coli transaldolase TalB with tagatose-6-phosphate
Descriptor: 2-deoxy-6-O-phosphono-beta-D-lyxo-hexofuranose, SULFATE ION, Transaldolase B
Authors:Stellmacher, L, Sandalova, T, Schneider, G, Sprenger, G.A, Samland, A.K.
Deposit date:2015-01-20
Release date:2016-01-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Novel mode of inhibition by D-tagatose 6-phosphate through a Heyns rearrangement in the active site of transaldolase B variants.
Acta Crystallogr D Struct Biol, 72, 2016
4TRQ
DownloadVisualize
BU of 4trq by Molmil
Crystal structure of Sac3/Thp1/Sem1
Descriptor: 26S proteasome complex subunit SEM1, Nuclear mRNA export protein SAC3, Nuclear mRNA export protein THP1, ...
Authors:Hellerschmied, D, Schneider, S, Kohler, A, Clausen, T.
Deposit date:2014-06-17
Release date:2015-08-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Nuclear Pore-Associated TREX-2 Complex Employs Mediator to Regulate Gene Expression.
Cell, 162, 2015
5TIO
DownloadVisualize
BU of 5tio by Molmil
Crystal Structure of Human Glycine Receptor alpha-3 Bound to AM-3607
Descriptor: (3S,3aS,9bS)-2-[(2H-1,3-benzodioxol-5-yl)sulfonyl]-3,5-dimethyl-1,2,3,3a,5,9b-hexahydro-4H-pyrrolo[3,4-c][1,6]naphthyridin-4-one, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCINE, ...
Authors:Shaffer, P.L, Huang, X, Chen, H.
Deposit date:2016-10-03
Release date:2017-01-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Crystal Structures of Human GlyRa3 Bound to a Novel Class of Potentiators with Efficacy in a Mouse Model of Neuropathic Pain
To Be Published
5TIN
DownloadVisualize
BU of 5tin by Molmil
Crystal Structure of Human Glycine Receptor alpha-3 Mutant N38Q Bound to AM-3607
Descriptor: (3S,3aS,9bS)-2-[(2H-1,3-benzodioxol-5-yl)sulfonyl]-3,5-dimethyl-1,2,3,3a,5,9b-hexahydro-4H-pyrrolo[3,4-c][1,6]naphthyridin-4-one, CHLORIDE ION, GLYCINE, ...
Authors:Shaffer, P.L, Huang, X, Chen, H.
Deposit date:2016-10-03
Release date:2017-01-18
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal Structures of Human GlyRa3 Bound to a Novel Class of Potentiators with Efficacy in a Mouse Model of Neuropathic Pain
To Be Published
6USN
DownloadVisualize
BU of 6usn by Molmil
Co-crystal structure of SPR with compound 5
Descriptor: (2-hydroxyphenyl)[3-methyl-1-(pyridin-2-yl)-1H-pyrazolo[3,4-b]pyridin-5-yl]methanone, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Huang, X, Wang, K.
Deposit date:2019-10-28
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.773 Å)
Cite:Virtual screening to identify potent sepiapterin reductase inhibitors.
Bioorg.Med.Chem.Lett., 30, 2020
5M5A
DownloadVisualize
BU of 5m5a by Molmil
Crystal structure of MELK in complex with an inhibitor
Descriptor: CHLORIDE ION, K-252A, Maternal embryonic leucine zipper kinase, ...
Authors:Canevari, G, Re Depaolini, S, Casale, E, Felder, E, Kuster, B, Heinzlmeir, S.
Deposit date:2016-10-21
Release date:2017-12-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The target landscape of clinical kinase drugs.
Science, 358, 2017
6HV6
DownloadVisualize
BU of 6hv6 by Molmil
Crystal structure of PatoxP, a cysteine protease-like domain of Photorhabdus asymbiotica toxin PaTox
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Toxin PAU_02230
Authors:Bogdanovic, X, Wirth, C, Hunte, C.
Deposit date:2018-10-10
Release date:2018-12-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:A cysteine protease-like domain enhances the cytotoxic effects of thePhotorhabdus asymbioticatoxin PaTox.
J. Biol. Chem., 294, 2019
2XGP
DownloadVisualize
BU of 2xgp by Molmil
Yeast DNA polymerase eta in complex with C8-2-acetylaminofluorene containing DNA
Descriptor: 5'-D(*CP*8FG*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3', CALCIUM ION, ...
Authors:Scheider, S, Lammens, K, Schorr, S, Hopfner, K.P, Carell, T.
Deposit date:2010-06-07
Release date:2010-11-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Mechanism of Replication Blocking and Bypass of Y-Family Polymerase Eta by Bulky Acetylaminofluorene DNA Adducts.
Proc.Natl.Acad.Sci.USA, 107, 2010
2OFU
DownloadVisualize
BU of 2ofu by Molmil
x-ray crystal structure of 2-aminopyrimidine carbamate 43 bound to Lck
Descriptor: 2,6-DIMETHYLPHENYL 2-(3,5-DIMETHOXY-4-(3-(4-METHYLPIPERAZIN-1-YL)PROPOXY)PHENYLAMINO)PYRIMIDIN- 4-YL(2,4-DIMETHOXYPHENYL)CARBAMATE, Proto-oncogene tyrosine-protein kinase LCK, SULFATE ION
Authors:Huang, X.
Deposit date:2007-01-04
Release date:2007-02-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel 2-Aminopyrimidine Carbamates as Potent and Orally Active Inhibitors of Lck: Synthesis, SAR, and in Vivo Antiinflammatory Activity
J.Med.Chem., 49, 2006

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon