4C5L

Structure of the pyridoxal kinase from Staphylococcus aureus in complex with pyridoxal

Summary for 4C5L

Related4C5J 4C5K 4C5M 4C5N
DescriptorPHOSPHOMETHYLPYRIMIDINE KINASE, 4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol, SULFATE ION, ... (5 entities in total)
Functional Keywordstransferase, ribokinase
Biological sourceSTAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50
Total number of polymer chains4
Total molecular weight120306.12
Authors
Nodwell, M.,Alte, F.,Sieber, S.A.,Schneider, S. (deposition date: 2013-09-12, release date: 2014-03-19, Last modification date: 2014-04-16)
Primary citation
Nodwell, M.B.,Koch, M.F.,Alte, F.,Schneider, S.,Sieber, S.A.
A Subfamily of Bacterial Ribokinases Utilizes a Hemithioacetal for Pyridoxal Phosphate Salvage.
J.Am.Chem.Soc., 136:4992-, 2014
PubMed: 24601602 (PDB entries with the same primary citation)
DOI: 10.1021/JA411785R
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.85 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.282402.8%4.8%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 4c5l
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Molmil generated image of 4c5l
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Molmil generated image of 4c5l
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More Biological unit images

Molmil generated image of 4c5l
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Molmil generated image of 4c5l
rotated about x axis by 90°
Molmil generated image of 4c5l
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (4c5l.pdb2.gz [172.1 KB])
Coordinate files for Biological unit (4c5l.pdb1.gz [173.55 KB])