Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8UJG
DownloadVisualize
BU of 8ujg by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and the mono-glycopeptide Srs13.2
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Kumar, P, Samara, N.L.
Deposit date:2023-10-11
Release date:2024-05-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UJE
DownloadVisualize
BU of 8uje by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
Descriptor: DI(HYDROXYETHYL)ETHER, Glycosyl transferase, MANGANESE (II) ION, ...
Authors:Kumar, P, Samara, N.L.
Deposit date:2023-10-11
Release date:2024-05-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UJF
DownloadVisualize
BU of 8ujf by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycosyl transferase, MANGANESE (II) ION, ...
Authors:Kumar, P, Samara, N.L.
Deposit date:2023-10-11
Release date:2024-05-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UI6
DownloadVisualize
BU of 8ui6 by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and Muc5AC-3,13
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Glycosyl transferase, MANGANESE (II) ION, ...
Authors:Kumar, P, Samara, N.L.
Deposit date:2023-10-10
Release date:2024-05-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UHV
DownloadVisualize
BU of 8uhv by Molmil
X-ray crystal structure of Toxoplasma gondii Apo GalNAc-T3
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Glycosyl transferase
Authors:Kumar, P, Samara, N.L.
Deposit date:2023-10-09
Release date:2024-05-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UJH
DownloadVisualize
BU of 8ujh by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with UDP-GalNAc, Mn2+, and a CST1 diglycopeptide.
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose, GLYCEROL, Glycosyl transferase, ...
Authors:Kumar, P, Samara, N.L.
Deposit date:2023-10-11
Release date:2024-05-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
8UHZ
DownloadVisualize
BU of 8uhz by Molmil
X-ray crystal structure of Toxoplasma gondii GalNAc-T3 in complex with Mn2+
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Glycosyl transferase, ...
Authors:Kumar, P, Samara, N.L.
Deposit date:2023-10-09
Release date:2024-05-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Nat Commun, 15, 2024
2XRX
DownloadVisualize
BU of 2xrx by Molmil
CRYSTAL STRUCTURE OF BIPHENYL DIOXYGENASE IN COMPLEX WITH BIPHENYL FROM BURKHOLDERIA XENOVORANS LB400
Descriptor: BIPHENYL, BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, ...
Authors:Kumar, P, Bolin, J.T.
Deposit date:2010-09-23
Release date:2010-11-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Structural Insight Into the Expanded Pcb-Degrading Abilities of a Biphenyl Dioxygenase Obtained by Directed Evolution.
J.Mol.Biol., 405, 2011
5E1I
DownloadVisualize
BU of 5e1i by Molmil
Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T210
Descriptor: (2S,3R,4R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-(methylsulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid, GLYCEROL, L,D-transpeptidase 2, ...
Authors:Kumar, P, Ginell, S.L, Lamichhane, G.
Deposit date:2015-09-29
Release date:2016-10-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
5DZJ
DownloadVisualize
BU of 5dzj by Molmil
Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T206 in conformation A
Descriptor: (2~{R},3~{R},4~{R})-4-methyl-3-(2-oxidanylidene-2-propoxy-ethyl)sulfanyl-5-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-2-carboxylic acid, L,D-transpeptidase 2
Authors:Kumar, P, Ginell, S.L, Lamichhane, G.
Deposit date:2015-09-25
Release date:2016-10-05
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.095 Å)
Cite:Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
6A80
DownloadVisualize
BU of 6a80 by Molmil
Crystal Structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus in complex with cystine
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K.
Deposit date:2018-07-05
Release date:2019-06-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
6A8S
DownloadVisualize
BU of 6a8s by Molmil
Crystal Structure of the putative amino acid-binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus in complex with Cysteine
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K.
Deposit date:2018-07-10
Release date:2019-06-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
6AA1
DownloadVisualize
BU of 6aa1 by Molmil
Crystal structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus bound with citrate
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K.
Deposit date:2018-07-16
Release date:2019-06-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
2YFL
DownloadVisualize
BU of 2yfl by Molmil
Crystal Structure of Biphenyl dioxygenase variant RR41 with 2-chloro dibenzofuran
Descriptor: 2-CHLORODIBENZOFURAN, BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, ...
Authors:Kumar, P, Bolin, J.T.
Deposit date:2011-04-06
Release date:2012-05-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Insights Into the Metabolism of 2-Chlorodibenzofuran by an Evolved Biphenyl Dioxygenase.
Biochem.Biophys.Res.Commun., 421, 2012
3NQ4
DownloadVisualize
BU of 3nq4 by Molmil
30mer structure of Lumazine synthase from Salmonella typhimurium LT2
Descriptor: 6,7-dimethyl-8-ribityllumazine synthase, SULFATE ION
Authors:Kumar, P, Singh, M, Karthikeyan, S.
Deposit date:2010-06-29
Release date:2011-06-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of Lumazine synthase from Salmonella typhimurium LT2
To be Published
3BP4
DownloadVisualize
BU of 3bp4 by Molmil
The high resolution crystal structure of HLA-B*2705 in complex with a Cathepsin A signal sequence peptide pCatA
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Kumar, P, Vahedi-Faridi, A, Saenger, W, Uchanska-Ziegler, B, Ziegler, A.
Deposit date:2007-12-18
Release date:2008-12-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for T cell alloreactivity among three HLA-B14 and HLA-B27 antigens
J.Biol.Chem., 284, 2009
3BP7
DownloadVisualize
BU of 3bp7 by Molmil
The high resolution crystal structure of HLA-B*2709 in complex with a Cathepsin A signal sequence peptide, pCatA
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Kumar, P, Vahedi-Faridi, A, Saenger, W, Uchanska-Ziegler, B, Ziegler, A.
Deposit date:2007-12-18
Release date:2008-12-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for T cell alloreactivity among three HLA-B14 and HLA-B27 antigens
J.Biol.Chem., 284, 2009
7L6U
DownloadVisualize
BU of 7l6u by Molmil
Unliganded ELIC in POPC-only nanodiscs at 3.3-Angstrom resolution
Descriptor: Gamma-aminobutyric-acid receptor subunit beta-1
Authors:Kumar, P, Grosman, C.
Deposit date:2020-12-23
Release date:2021-06-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure and function at the lipid-protein interface of a pentameric ligand-gated ion channel.
Proc.Natl.Acad.Sci.USA, 118, 2021
4NOF
DownloadVisualize
BU of 4nof by Molmil
Crystal structure of the second Ig domain from mouse Polymeric Immunoglobulin receptor [PSI-NYSGRC-006220]
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Polymeric immunoglobulin receptor
Authors:Sampathkumar, P, Kumar, P.R, Ahmed, M, Banu, R, Bhosle, R, Calarese, D.A, Celikgil, A, Chamala, S, Chan, M.K, Chowdhury, S, Fiser, A, Garforth, S.J, Glenn, A.S, Hillerich, B, Khafizov, K, Attonito, J, Love, J.D, Patel, H, Patel, R, Seidel, R.D, Smith, B, Stead, M, Casadevall, A, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Deposit date:2013-11-19
Release date:2013-12-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of the second Ig domain from mouse Polymeric Immunoglobulin receptor
to be published
7K34
DownloadVisualize
BU of 7k34 by Molmil
Crystal structure of L-threonine transaldolase from Pseudomonas fluorescens in internal aldimine state
Descriptor: SULFATE ION, Threonine aldolase
Authors:Kumar, P, Bingman, C.A, Buller, A.R.
Deposit date:2020-09-10
Release date:2020-12-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:l-Threonine Transaldolase Activity Is Enabled by a Persistent Catalytic Intermediate.
Acs Chem.Biol., 16, 2021
3KFO
DownloadVisualize
BU of 3kfo by Molmil
Crystal structure of the C-terminal domain from the nuclear pore complex component NUP133 from Saccharomyces cerevisiae
Descriptor: GLYCEROL, Nucleoporin NUP133
Authors:Sampathkumar, P, Bonanno, J.B, Miller, S, Bain, K, Dickey, M, Gheyi, T, Almo, S.C, Rout, M, Sali, A, Phillips, J, Pieper, U, Fernandez-Martinez, J, Franke, J.D, Atwell, S, Thompson, D.A, Emtage, J.S, Wasserman, S, Sauder, J.M, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-10-27
Release date:2010-01-26
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex.
Proteins, 79, 2011
3KES
DownloadVisualize
BU of 3kes by Molmil
Crystal structure of the autoproteolytic domain from the nuclear pore complex component NUP145 from Saccharomyces cerevisiae in the Hexagonal, P61 space group
Descriptor: 1,2-ETHANEDIOL, Nucleoporin NUP145
Authors:Sampathkumar, P, Ozyurt, S.A, Do, J, Bain, K, Dickey, M, Gheyi, T, Sali, A, Kim, S.J, Phillips, J, Pieper, U, Fernandez-Martinez, J, Franke, J.D, Atwell, S, Thompson, D.A, Emtage, J.S, Wasserman, S, Rout, M, Sauder, J.M, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-10-26
Release date:2009-12-22
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145.
Proteins, 78, 2010
3KEP
DownloadVisualize
BU of 3kep by Molmil
Crystal structure of the autoproteolytic domain from the nuclear pore complex component NUP145 from Saccharomyces cerevisiae
Descriptor: 1,2-ETHANEDIOL, Nucleoporin NUP145
Authors:Sampathkumar, P, Ozyurt, S.A, Do, J, Bain, K, Dickey, M, Gheyi, T, Sali, A, Kim, S.J, Phillips, J, Pieper, U, Fernandez-Martinez, J, Franke, J.D, Atwell, S, Thompson, D.A, Emtage, J.S, Wasserman, S, Rout, M, Sauder, J.M, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-10-26
Release date:2009-12-22
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145.
Proteins, 78, 2010
2AF6
DownloadVisualize
BU of 2af6 by Molmil
Crystal structure of Mycobacterium tuberculosis Flavin dependent thymidylate synthase (Mtb ThyX) in the presence of co-factor FAD and substrate analog 5-Bromo-2'-Deoxyuridine-5'-Monophosphate (BrdUMP)
Descriptor: 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Sampathkumar, P, Turley, S, Ulmer, J.E, Rhie, H.G, Sibley, C.H, Hol, W.G.
Deposit date:2005-07-25
Release date:2005-10-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structure of the Mycobacterium tuberculosis Flavin Dependent Thymidylate Synthase (MtbThyX) at 2.0A Resolution.
J.Mol.Biol., 352, 2005
8EIT
DownloadVisualize
BU of 8eit by Molmil
Structure of FFAR1-Gq complex bound to DHA
Descriptor: A modified Guanine nucleotide-binding protein G(q) subunit alpha, DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID, Free fatty acid receptor 1, ...
Authors:Kumari, P, Inoue, A, Chapman, K, Lian, P, Rosenbaum, D.M.
Deposit date:2022-09-15
Release date:2023-05-24
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Molecular mechanism of fatty acid activation of FFAR1.
Proc.Natl.Acad.Sci.USA, 120, 2023

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon