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Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with dimethylallyl S-thiolodiphosphate
Descriptor:	DIMETHYLALLYL S-THIOLODIPHOSPHATE, aromatic prenyltransferase
Authors:	Sun, F, Gao, B.
Deposit date:	2016-06-06
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase. Nat. Chem. Biol., 13, 2017

8JZS

Outward-facing SLC15A4 dimer
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, lysosomal transporter
Authors:	Zhang, S.S, Chen, X.D, Xie, M.
Deposit date:	2023-07-06
Release date:	2023-09-27
Last modified:	2023-12-13
Method:	ELECTRON MICROSCOPY (2.95 Å)
Cite:	Structural basis for recruitment of TASL by SLC15A4 in human endolysosomal TLR signaling. Nat Commun, 14, 2023

1W5G

An anti-parallel four helix bundle (acetimide modification).
Descriptor:	GENERAL CONTROL PROTEIN GCN4
Authors:	Yadav, M.K, Leman, L.J, Stout, C.D, Ghadiri, M.R.
Deposit date:	2004-08-06
Release date:	2004-09-24
Last modified:	2024-05-08
Method:	X-RAY DIFFRACTION (2.16 Å)
Cite:	Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides Biochemistry, 44, 2005

8JZU

SLC15A4_TASL complex
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, TLR adapter,Green fluorescent protein, TSLAA-EGPF tag fusion protein
Authors:	Zhang, S.S, Chen, X.D, Xie, M.
Deposit date:	2023-07-06
Release date:	2023-09-27
Last modified:	2024-06-05
Method:	ELECTRON MICROSCOPY (3.05 Å)
Cite:	Structural basis for recruitment of TASL by SLC15A4 in human endolysosomal TLR signaling. Nat Commun, 14, 2023

8JZR

Outward_facing SLC15A4 monomer
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, lysosomal transporter,ALFA tag
Authors:	Zhang, S.S, Chen, X.D, Xie, M.
Deposit date:	2023-07-06
Release date:	2023-09-27
Last modified:	2024-10-09
Method:	ELECTRON MICROSCOPY (3.25 Å)
Cite:	Structural basis for recruitment of TASL by SLC15A4 in human endolysosomal TLR signaling. Nat Commun, 14, 2023

4CZ0

Structure of the A_mallard_Sweden_51_2002 H10 Avian Haemmaglutinin in complex with avian receptor analog Su-3SLN
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, HAEMAGGLUTININ, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose, ...
Authors:	Vachieri, S.G, Xiong, X, Collins, P.J, Walker, P.A, Martin, S.R, Haire, L.F, McCauley, J.W, Gamblin, S.J, Skehel, J.J.
Deposit date:	2014-04-16
Release date:	2014-06-11
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.2 Å)
Cite:	Receptor Binding by H10 Influenza Viruses. Nature, 511, 2014

1W5I

ABA does not affect topology of pLI.
Descriptor:	GENERAL CONTROL PROTEIN GCN4
Authors:	Yadav, M.K, Leman, L.J, Stout, C.D, Ghadiri, M.R.
Deposit date:	2004-08-07
Release date:	2004-09-24
Last modified:	2024-05-08
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides Biochemistry, 44, 2005

4H8E

Structure of S. aureus undecaprenyl diphosphate synthase in complex with FPP and sulfate
Descriptor:	FARNESYL DIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ...
Authors:	Zhu, W, Oldfield, E.
Deposit date:	2012-09-22
Release date:	2012-12-19
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.3 Å)
Cite:	Antibacterial drug leads targeting isoprenoid biosynthesis. Proc.Natl.Acad.Sci.USA, 110, 2013

5KCY

Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate and (+)-butyrolactone II
Descriptor:	GERANYL S-THIOLODIPHOSPHATE, aromatic prenyltransferase, methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate
Authors:	Sun, F, Gao, B.
Deposit date:	2016-06-07
Release date:	2016-12-21
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase. Nat. Chem. Biol., 13, 2017

4ED4

Crystal structure of IspE (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase) from Mycobacterium abcessus, bound to ATP
Descriptor:	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, ADENOSINE-5'-TRIPHOSPHATE
Authors:	Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:	2012-03-26
Release date:	2012-04-04
Last modified:	2023-09-13
Method:	X-RAY DIFFRACTION (1.75 Å)
Cite:	Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb), 95, 2015

3SGV

Crystal Structure of E. coli undecaprenyl pyrophosphate synthase in complex with BPH-1290
Descriptor:	2-{[3-(3,4-dimethylphenoxy)phenyl]carbamoyl}-4-nitrobenzoic acid, Undecaprenyl pyrophosphate synthase
Authors:	Cao, R, Liu, Y.-L, Oldfield, E.
Deposit date:	2011-06-15
Release date:	2012-12-19
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.61 Å)
Cite:	Antibacterial drug leads targeting isoprenoid biosynthesis. Proc.Natl.Acad.Sci.USA, 110, 2013

3S37

Structural basis for the function of two anti-VEGF receptor antibodies
Descriptor:	1121B Fab heavy chain, 1121B Fab light chain, Vascular endothelial growth factor receptor 2
Authors:	Franklin, M.C.
Deposit date:	2011-05-17
Release date:	2011-08-24
Last modified:	2017-11-08
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	The Structural Basis for the Function of Two Anti-VEGF Receptor 2 Antibodies. Structure, 19, 2011

4EO9

Crystal structure of a phosphoglycerate mutase gpm1 from Mycobacterium leprae
Descriptor:	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, CHLORIDE ION
Authors:	Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:	2012-04-13
Release date:	2012-04-25
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2.45 Å)
Cite:	Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb), 95, 2015

5KD0

Crystal structure of the aromatic prenyltransferase AtaPT(E91A) mutant from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate and (+)-butyrolactone II
Descriptor:	GERANYL S-THIOLODIPHOSPHATE, aromatic prenyltransferase, methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate
Authors:	Sun, F, Gao, B.
Deposit date:	2016-06-07
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.82 Å)
Cite:	Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase. Nat. Chem. Biol., 13, 2017

4E98

Crystal structure of possible CutA1 divalent ion tolerance protein from Cryptosporidium parvum Iowa II
Descriptor:	CHLORIDE ION, CutA1 divalent ion tolerance protein
Authors:	Seattle Structural Genomics Center for Infectious Disease (SSGCID), Buchko, G.W, Robinson, H.
Deposit date:	2012-03-20
Release date:	2012-04-11
Last modified:	2023-09-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structure of a CutA1 divalent-cation tolerance protein from Cryptosporidium parvum, the protozoal parasite responsible for cryptosporidiosis. Acta Crystallogr F Struct Biol Commun, 71, 2015

7CYP

Complex of SARS-CoV-2 spike trimer with its neutralizing antibody HB27
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of HB27, ...
Authors:	Wang, X, Zhu, L.
Deposit date:	2020-09-04
Release date:	2021-06-09
Last modified:	2022-02-23
Method:	ELECTRON MICROSCOPY (3.5 Å)
Cite:	Double lock of a potent human therapeutic monoclonal antibody against SARS-CoV-2. Natl Sci Rev, 8, 2021

5KD6

Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with dimethylallyl S-thiolodiphosphate and (-)-butyrolactone II
Descriptor:	DIMETHYLALLYL S-THIOLODIPHOSPHATE, aromatic prenyltransferase, methyl (2S)-4-hydroxy-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-5-oxo-2,5-dihydrofuran-2-carboxylate
Authors:	Sun, F, Gao, B.
Deposit date:	2016-06-07
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.84 Å)
Cite:	Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase. Nat. Chem. Biol., 13, 2017

4DI1

Crystal structure of enoyl-CoA hydratase EchA17 from Mycobacterium marinum
Descriptor:	1,2-ETHANEDIOL, Enoyl-CoA hydratase EchA17
Authors:	Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:	2012-01-30
Release date:	2012-02-08
Last modified:	2023-09-13
Method:	X-RAY DIFFRACTION (2.25 Å)
Cite:	Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb), 95, 2015

7X6Z

TRIM7 in complex with C-terminal peptide of NSP12
Descriptor:	E3 ubiquitin-protein ligase TRIM7, peptide
Authors:	Zhang, H, Liang, X, Li, X.Z.
Deposit date:	2022-03-08
Release date:	2022-08-10
Last modified:	2024-05-29
Method:	X-RAY DIFFRACTION (1.43 Å)
Cite:	A C-terminal glutamine recognition mechanism revealed by E3 ligase TRIM7 structures. Nat.Chem.Biol., 18, 2022

7X70

TRIM7 in complex with C-terminal peptide of NSP8
Descriptor:	E3 ubiquitin-protein ligase TRIM7, peptide
Authors:	Zhang, H, Liang, X, Li, X.Z.
Deposit date:	2022-03-08
Release date:	2022-08-10
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.25 Å)
Cite:	A C-terminal glutamine recognition mechanism revealed by E3 ligase TRIM7 structures. Nat.Chem.Biol., 18, 2022

7X6Y

TRIM7 in complex with C-terminal peptide of NSP5
Descriptor:	E3 ubiquitin-protein ligase TRIM7, peptide
Authors:	Zhang, H, Liang, X, Li, X.Z.
Deposit date:	2022-03-08
Release date:	2022-08-10
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.39 Å)
Cite:	A C-terminal glutamine recognition mechanism revealed by E3 ligase TRIM7 structures. Nat.Chem.Biol., 18, 2022

6MK0

Integrin AlphaVBeta3 ectodomain bound to antagonist TDI-4161
Descriptor:	(2S)-2-[(1,3-benzothiazole-2-carbonyl)amino]-4-{[5-(1,8-naphthyridin-2-yl)pentanoyl]amino}butanoic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:	van Agthoven, J, Arnaout, M.A.
Deposit date:	2018-09-24
Release date:	2019-09-25
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (3.005 Å)
Cite:	Novel Pure alphaVbeta3 Integrin Antagonists That Do Not Induce Receptor Extension, Prime the Receptor, or Enhance Angiogenesis at Low Concentrations Acs Pharmacol Transl Sci, 2, 2019

5KCG

Crystal structure of the aromatic prenyltransferase AtaPT (apo state) from Aspergillus terreus A8-4
Descriptor:	aromatic prenyltransferase
Authors:	Sun, F, Gao, B.
Deposit date:	2016-06-06
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase. Nat. Chem. Biol., 13, 2017

7DFG

Structure of COVID-19 RNA-dependent RNA polymerase bound to favipiravir
Descriptor:	6-fluoro-3-oxo-4-(5-O-phosphono-beta-D-ribofuranosyl)-3,4-dihydropyrazine-2-carboxamide, MAGNESIUM ION, Non-structural protein 7, ...
Authors:	Li, Z, Zhou, Z, Yu, X.
Deposit date:	2020-11-08
Release date:	2021-11-17
Last modified:	2024-05-29
Method:	ELECTRON MICROSCOPY (2.7 Å)
Cite:	Structural basis for repurpose and design of nucleotide drugs for treating COVID-19 To Be Published

7DFH

Structure of COVID-19 RNA-dependent RNA polymerase bound to ribavirin
Descriptor:	MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ...
Authors:	Li, Z, Zhou, Z, Yu, X.
Deposit date:	2020-11-08
Release date:	2021-11-17
Last modified:	2024-05-29
Method:	ELECTRON MICROSCOPY (2.97 Å)
Cite:	Structural basis for repurpose and design of nucleotide drugs for treating COVID-19 To Be Published

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