Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7W5M
DownloadVisualize
BU of 7w5m by Molmil
Crystal structure of AtNASP in complex of H3 alpha3 helix peptide
Descriptor: GLYCEROL, H3 alpha3 helix peptide, SULFATE ION, ...
Authors:Liu, Y, Bao, H.
Deposit date:2021-11-30
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for histone H3 recognition by NASP in Arabidopsis.
J Integr Plant Biol, 64, 2022
5ZEV
DownloadVisualize
BU of 5zev by Molmil
Solution structure of G-quadruplex formed in vegfr-2 proximal promoter sequence
Descriptor: DNA (5'-D(*GP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*TP*GP*AP*GP*GP*TP*GP*CP*GP*GP*GP*GP*T)-3')
Authors:Liu, Y, Lan, W.X.
Deposit date:2018-02-28
Release date:2018-04-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A putative G-quadruplex structure in the proximal promoter ofVEGFR-2has implications for drug design to inhibit tumor angiogenesis.
J. Biol. Chem., 293, 2018
7DL5
DownloadVisualize
BU of 7dl5 by Molmil
Crystal structure of Thermotoga Maritima ferritin mutant at 2.3 Angstrom resolution
Descriptor: FE (III) ION, Ferritin, MAGNESIUM ION
Authors:Liu, Y, Leng, X, Zang, J, Zhao, G.
Deposit date:2020-11-26
Release date:2021-12-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A short helix regulates conversion of dimeric and 24-meric ferritin architectures.
Int.J.Biol.Macromol., 203, 2022
7DZM
DownloadVisualize
BU of 7dzm by Molmil
Crystal Structure of the cross-restricted T18A TCR and HLAB8101 bound to HIV-1 Gag TL9 peptide
Descriptor: Beta-2-microglobulin, Gag-Pol polyprotein, MHC class I antigen, ...
Authors:Liu, Y, Yin, L.
Deposit date:2021-01-25
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Cross-reactive TCR with alloreactivity for immunodominant HIV-1 epitope Gag TL9 with enhanced control of viral infection
Biorxiv, 2021
7DZN
DownloadVisualize
BU of 7dzn by Molmil
Crystal Structure of the cross-restricted T18A TCR and HLAB4201 bound to HIV-1 Gag TL9 peptide
Descriptor: Beta-2-microglobulin, Gag-Pol polyprotein, MHC class I antigen, ...
Authors:Liu, Y, Yin, L.
Deposit date:2021-01-25
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Cross-reactive TCR with alloreactivity for immunodominant HIV-1 epitope Gag TL9 with enhanced control of viral infection
Biorxiv, 2021
7FA3
DownloadVisualize
BU of 7fa3 by Molmil
Selenomethionine-derived structure of Aca1 in Pseudomonas phage JBD30
Descriptor: Aca1
Authors:Liu, Y, Zhang, L, Wu, B, Huang, H.
Deposit date:2021-07-05
Release date:2021-07-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.847 Å)
Cite:Structural basis for anti-CRISPR repression mediated by bacterial operon proteins Aca1 and Aca2.
J.Biol.Chem., 297, 2021
6UE6
DownloadVisualize
BU of 6ue6 by Molmil
PWWP1 domain of NSD2 in complex with MR837
Descriptor: 4-cyano-N-cyclopropyl-N-[(thiophen-2-yl)methyl]benzamide, Histone-lysine N-methyltransferase NSD2, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, De Freitas, R.F, Schapira, M, Brown, P.J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2019-09-20
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of Small-Molecule Antagonists of the PWWP Domain of NSD2.
J.Med.Chem., 64, 2021
6GRC
DownloadVisualize
BU of 6grc by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Sodium
Descriptor: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (2.452 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRD
DownloadVisualize
BU of 6grd by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Cesium
Descriptor: CESIUM ION, DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRB
DownloadVisualize
BU of 6grb by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Potassium
Descriptor: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
5T5A
DownloadVisualize
BU of 5t5a by Molmil
Crystal Structure of the Twister Sister (TS) Ribozyme at 2.0 Angstrom
Descriptor: DNA/RNA (71-MER), MAGNESIUM ION
Authors:Lilley, D.M.J, Liu, Y, Wilson, T.J.
Deposit date:2016-08-30
Release date:2017-03-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure of a nucleolytic ribozyme that employs a catalytic metal ion.
Nat. Chem. Biol., 13, 2017
8YKA
DownloadVisualize
BU of 8yka by Molmil
Cryo-EM structure of P97-VCPIP1 complex
Descriptor: Deubiquitinating protein VCPIP1, Transitional endoplasmic reticulum ATPase
Authors:Liu, Y, Lu, P, Gao, H, Li, F.
Deposit date:2024-03-04
Release date:2024-10-02
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Molecular Basis of VCPIP1 and P97/VCP Interaction Reveals Its Functions in Post-Mitotic Golgi Reassembly.
Adv Sci, 2024
1LXT
DownloadVisualize
BU of 1lxt by Molmil
STRUCTURE OF PHOSPHOTRANSFERASE PHOSPHOGLUCOMUTASE FROM RABBIT
Descriptor: CADMIUM ION, PHOSPHOGLUCOMUTASE (DEPHOSPHO FORM), SULFATE ION
Authors:Ray Junior, W.J, Baranidharan, S, Liu, Y.
Deposit date:1996-07-28
Release date:1997-02-12
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of rabbit muscle phosphoglucomutase refined at 2.4 A resolution.
Acta Crystallogr.,Sect.D, 53, 1997
8YDC
DownloadVisualize
BU of 8ydc by Molmil
Crystal structure of a hammerhead ribozyme with pseudoknot
Descriptor: DNA/RNA (5'-R(*AP*CP*AP*UP*GP*UP*CP*U)-D(P*C)-R(P*UP*GP*GP*GP*A)-3'), GUANOSINE-5'-TRIPHOSPHATE, ribozyme strand
Authors:Liu, Y, Zhan, X.
Deposit date:2024-02-20
Release date:2024-08-21
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:The structure and catalytic mechanism of a pseudoknot-containing hammerhead ribozyme.
Nat Commun, 15, 2024
4RGY
DownloadVisualize
BU of 4rgy by Molmil
Structural and functional analysis of a low-temperature-active alkaline esterase from South China Sea marine sediment microbial metagenomic library
Descriptor: Esterase
Authors:Liu, Y.
Deposit date:2014-10-01
Release date:2015-09-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and functional analysis of a low-temperature-active alkaline esterase from South China Sea marine sediment microbial metagenomic library.
J Ind Microbiol Biotechnol, 42, 2015
5JZV
DownloadVisualize
BU of 5jzv by Molmil
The structure of D77G hCINAP-ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase isoenzyme 6
Authors:Liu, Y, Yang, Z, Yang, Y, Cai, X, Zheng, X.
Deposit date:2016-05-17
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The ATPase hCINAP regulates 18S rRNA processing and is essential for embryogenesis and tumour growth.
Nat Commun, 7, 2016
4RZI
DownloadVisualize
BU of 4rzi by Molmil
Crystal structure of PhaB from Synechocystis sp. PCC 6803
Descriptor: 3-ketoacyl-acyl carrier protein reductase
Authors:Xue, S, Liu, Y.
Deposit date:2014-12-22
Release date:2015-09-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.891 Å)
Cite:Structure-directed construction of a high-performance version of the enzyme FabG from the photosynthetic microorganism Synechocystis sp. PCC 6803.
Febs Lett., 589, 2015
6V2S
DownloadVisualize
BU of 6v2s by Molmil
Crystal Structure of chromodomain of MPP8 in complex with inhibitor UNC3866
Descriptor: M-phase phosphoprotein 8, UNC3866, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, Walker, J.R, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2019-11-25
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis for the Binding Selectivity of Human CDY Chromodomains.
Cell Chem Biol, 27, 2020
6V2R
DownloadVisualize
BU of 6v2r by Molmil
Crystal Structure of chromodomain of CBX7 mutant V13A in complex with inhibitor UNC3866
Descriptor: Chromobox protein homolog 7, UNC3866, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, Walker, J.R, Stuckey, J.I, Dickson, B.M, James, L.I, Frye, S.V, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2019-11-25
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis for the Binding Selectivity of Human CDY Chromodomains.
Cell Chem Biol, 27, 2020
6V2D
DownloadVisualize
BU of 6v2d by Molmil
Crystal Structure of chromodomain of CDYL2 in complex with inhibitor UNC3866
Descriptor: Chromodomain Y-like protein 2, UNC3866, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2019-11-22
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for the Binding Selectivity of Human CDY Chromodomains.
Cell Chem Biol, 27, 2020
8CVZ
DownloadVisualize
BU of 8cvz by Molmil
Human glycogenin-1 and glycogen synthase-1 complex in the apo ordered state
Descriptor: Glycogen [starch] synthase, muscle, Glycogenin-1
Authors:Liu, Y, Fastman, N.M, Tzitzilonis, C.
Deposit date:2022-05-18
Release date:2022-07-13
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:The structural mechanism of human glycogen synthesis by the GYS1-GYG1 complex.
Cell Rep, 40, 2022
8CVY
DownloadVisualize
BU of 8cvy by Molmil
Human glycogenin-1 and glycogen synthase-1 complex in the apo mobile state
Descriptor: Glycogen [starch] synthase, muscle, Glycogenin-1
Authors:Liu, Y, Fastman, N.M, Tzitzilonis, C.
Deposit date:2022-05-18
Release date:2022-07-13
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The structural mechanism of human glycogen synthesis by the GYS1-GYG1 complex.
Cell Rep, 40, 2022
8CVX
DownloadVisualize
BU of 8cvx by Molmil
Human glycogenin-1 and glycogen synthase-1 complex in the presence of glucose-6-phosphate
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, Glycogen [starch] synthase, muscle, ...
Authors:Liu, Y, Fastman, N.M, Tzitzilonis, C.
Deposit date:2022-05-18
Release date:2022-07-13
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The structural mechanism of human glycogen synthesis by the GYS1-GYG1 complex.
Cell Rep, 40, 2022
7XTO
DownloadVisualize
BU of 7xto by Molmil
Structure of ClA2 reveal the Mechanism of soil bacterial derived chlorinase
Descriptor: 1-DEAZA-ADENOSINE, soil bacterial derived chlorinase
Authors:Liu, Y.H, Liu, Y, Li, Y.
Deposit date:2022-05-17
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Expression, purification and structure determination of the chlorinase ClA2.
Biochem.Biophys.Res.Commun., 628, 2022
8IQQ
DownloadVisualize
BU of 8iqq by Molmil
Crystal structure of Anti-PEG antibody M9 Fv-clasp fragment with PEG (co-crystallization with PEG2000MME)
Descriptor: DODECAETHYLENE GLYCOL, M9 VH-SARAH, M9 VL-SARAH
Authors:Mori, T, Teramoto, T, Liu, Y, Mori, T, Kakuta, Y.
Deposit date:2023-03-17
Release date:2024-03-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Comparation of structures and binding properties between two anti-polyethylene glycol antibodies induced via T cell-independent and T cell-dependent pathway
To Be Published

226707

數據於2024-10-30公開中

PDB statisticsPDBj update infoContact PDBjnumon