Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7ZY6
DownloadVisualize
BU of 7zy6 by Molmil
Identification of M4205 a highly selective inhibitor of cKIT mutations for unresectable metastatic or recurrent GIST
Descriptor: 5-imidazo[1,2-a]pyridin-3-yl-~{N}-[(1~{R})-1-(6-pyrrolidin-1-ylpyridin-3-yl)ethyl]pyridin-3-amine, HUMAN PROTO-ONCOGENE C-KIT
Authors:Graedler, U, Lammens, A.
Deposit date:2022-05-24
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Identification of M4205─A Highly Selective Inhibitor of KIT Mutations for Treatment of Unresectable Metastatic or Recurrent Gastrointestinal Stromal Tumors.
J.Med.Chem., 66, 2023
7S0S
DownloadVisualize
BU of 7s0s by Molmil
M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit
Descriptor: 16S/23S rRNA (Cytidine-2'-O)-methyltransferase TlyA, 23S rRNA, 50S ribosomal protein L10, ...
Authors:Laughlin, Z.T, Dunham, C.M, Conn, G.L.
Deposit date:2021-08-31
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:50S subunit recognition and modification by the Mycobacterium tuberculosis ribosomal RNA methyltransferase TlyA.
Proc.Natl.Acad.Sci.USA, 119, 2022
4ZHX
DownloadVisualize
BU of 4zhx by Molmil
Novel binding site for allosteric activation of AMPK
Descriptor: (5S,6R,7R,9R,13cR,14R,16aS)-6-methoxy-5-methyl-7-(methylamino)-6,7,8,9,14,15,16,16a-octahydro-5H,13cH-5,9-epoxy-4b,9a,1 5-triazadibenzo[b,h]cyclonona[1,2,3,4-jkl]cyclopenta[e]-as-indacen-14-ol, 3-[4-(2-hydroxyphenyl)phenyl]-4-oxidanyl-6-oxidanylidene-7H-thieno[2,3-b]pyridine-5-carbonitrile, 5'-AMP-activated protein kinase catalytic subunit alpha-2, ...
Authors:Langendorf, C.G, Ngoei, K.R, Issa, S.M.A, Ling, N, Gorman, M.A, Parker, M.W, Sakamoto, K, Scott, J.W, Oakhill, J.S, Kemp, B.E.
Deposit date:2015-04-27
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structural basis of allosteric and synergistic activation of AMPK by furan-2-phosphonic derivative C2 binding.
Nat Commun, 7, 2016
5A03
DownloadVisualize
BU of 5a03 by Molmil
Crystal structure of aldose-aldose oxidoreductase from Caulobacter crescentus complexed with xylose
Descriptor: 1,4-DIETHYLENE DIOXIDE, ALDOSE-ALDOSE OXIDOREDUCTASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Taberman, H, Rouvinen, J, Parkkinen, T.
Deposit date:2015-04-17
Release date:2015-10-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.848 Å)
Cite:Structure and Function of Caulobacter Crescentus Aldose-Aldose Oxidoreductase.
Biochem.J., 472, 2015
5A05
DownloadVisualize
BU of 5a05 by Molmil
Crystal structure of aldose-aldose oxidoreductase from Caulobacter crescentus complexed with maltotriose
Descriptor: ALDOSE-ALDOSE OXIDOREDUCTASE, MALONATE ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Taberman, H, Rouvinen, J, Parkkinen, T.
Deposit date:2015-04-17
Release date:2015-10-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Structure and Function of Caulobacter Crescentus Aldose-Aldose Oxidoreductase.
Biochem.J., 472, 2015
5A04
DownloadVisualize
BU of 5a04 by Molmil
Crystal structure of aldose-aldose oxidoreductase from Caulobacter crescentus complexed with glucose
Descriptor: 1,4-DIETHYLENE DIOXIDE, ALDOSE-ALDOSE OXIDOREDUCTASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Taberman, H, Rouvinen, J, Parkkinen, T.
Deposit date:2015-04-17
Release date:2015-10-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Structure and Function of Caulobacter Crescentus Aldose-Aldose Oxidoreductase.
Biochem.J., 472, 2015
8BTZ
DownloadVisualize
BU of 8btz by Molmil
Single-stranded Paranemic Crossover RNA Triangle (PXT)
Descriptor: RNA Paranemic croosover triangle (PXT)
Authors:Sampedro, N, McRae, E.K.S, Andersen, E.S.
Deposit date:2022-11-30
Release date:2022-12-28
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (5.39 Å)
Cite:An RNA Paranemic Crossover Triangle as A 3D Module for Cotranscriptional Nanoassembly.
Small, 19, 2023
5HNE
DownloadVisualize
BU of 5hne by Molmil
X-RAY CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL BRANCHED CHAIN AMINOTRANSFERASE (BCATM) COMPLEXED WITH A 2-ARYL BENZIMIDAZOLE COMPOUND AND AN INTERNAL ALDIMINE LINKED PLP COFACTOR
Descriptor: 1,2-ETHANEDIOL, 1-[(1R,3S)-3-{[(5-bromothiophen-2-yl)carbonyl]amino}cyclohexyl]-N-methyl-2-(pyridin-2-yl)-1H-benzimidazole-5-carboxamide, Branched-chain-amino-acid aminotransferase, ...
Authors:Somers, D.O.
Deposit date:2016-01-18
Release date:2016-05-04
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Discovery and Optimization of Potent, Selective, and in Vivo Efficacious 2-Aryl Benzimidazole BCATm Inhibitors.
Acs Med.Chem.Lett., 7, 2016
6GQ5
DownloadVisualize
BU of 6gq5 by Molmil
Crystal Structure of the PSMalpha3 Peptide Mutant L15A Forming Cross-Alpha Amyloid-like Fibril
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, Phenol-soluble modulin alpha 3 peptide
Authors:Landau, M, Tayeb-Fligelman, E.
Deposit date:2018-06-07
Release date:2019-06-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Staphylococcus aureus PSM alpha 3 Cross-alpha Fibril Polymorphism and Determinants of Cytotoxicity.
Structure, 28, 2020
8BU8
DownloadVisualize
BU of 8bu8 by Molmil
Double-motif Single-stranded Paranemic Crossover RNA Triangle (2PXT)
Descriptor: RNA (354-MER)
Authors:Sampedro, N, Andersen, E.S, McRae, E.K.S.
Deposit date:2022-11-30
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (6.56 Å)
Cite:An RNA Paranemic Crossover Triangle as A 3D Module for Cotranscriptional Nanoassembly.
Small, 19, 2023
6GQ2
DownloadVisualize
BU of 6gq2 by Molmil
Crystal Structure of the PSMalpha3 Peptide Mutant K12A Forming Cross-Alpha Amyloid-like Fibril
Descriptor: Phenol-soluble modulin alpha 3 peptide, SULFATE ION
Authors:Landau, M, Tayeb-Fligelman, E.
Deposit date:2018-06-07
Release date:2019-06-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Staphylococcus aureus PSM alpha 3 Cross-alpha Fibril Polymorphism and Determinants of Cytotoxicity.
Structure, 28, 2020
6GQC
DownloadVisualize
BU of 6gqc by Molmil
Crystal Structure of the PSMalpha3 Peptide Mutant G16A Forming Cross-Alpha Amyloid-like Fibril
Descriptor: CHLORIDE ION, Phenol-soluble modulin alpha 3 peptide, SODIUM ION
Authors:Landau, M, Tayeb-Fligelman, E.
Deposit date:2018-06-07
Release date:2019-06-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Staphylococcus aureus PSM alpha 3 Cross-alpha Fibril Polymorphism and Determinants of Cytotoxicity.
Structure, 28, 2020
6S8Z
DownloadVisualize
BU of 6s8z by Molmil
Elongation Factor P from Corynebacterium glutamicum
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Elongation factor P, ...
Authors:Schneider, S, Scheidler, C.M.
Deposit date:2019-07-11
Release date:2020-02-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and Function of an Elongation Factor P Subfamily in Actinobacteria.
Cell Rep, 30, 2020
6KVH
DownloadVisualize
BU of 6kvh by Molmil
The mutant crystal structure of endo-polygalacturonase (T284A) from Talaromyces leycettanus JCM 12802
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose, endo-polygalacturonase
Authors:Tu, T, Wang, Z, Luo, H, Yao, B.
Deposit date:2019-09-04
Release date:2020-09-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Insights into the Mechanisms Underlying the Kinetic Stability of GH28 Endo-Polygalacturonase.
J.Agric.Food Chem., 69, 2021
8D8R
DownloadVisualize
BU of 8d8r by Molmil
SARS-CoV-2 Spike RBD in complex with DMAb 2196
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2196 heavy chain, 2196 light chain, ...
Authors:Du, J, Cui, J, Pallesen, J.
Deposit date:2022-06-08
Release date:2022-10-19
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:DNA-delivered antibody cocktail exhibits improved pharmacokinetics and confers prophylactic protection against SARS-CoV-2.
Nat Commun, 13, 2022
8D8Q
DownloadVisualize
BU of 8d8q by Molmil
SARS-CoV-2 Spike RBD in complex with DMAbs 2130 and 2196
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2130 heavy chain, 2130 light chain, ...
Authors:Du, J, Cui, J, Pallesen, J.
Deposit date:2022-06-08
Release date:2022-10-19
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:DNA-delivered antibody cocktail exhibits improved pharmacokinetics and confers prophylactic protection against SARS-CoV-2.
Nat Commun, 13, 2022
8F5K
DownloadVisualize
BU of 8f5k by Molmil
Azurin from Pseudomonas aeruginosa, Y72F/Y108F/F110A mutant
Descriptor: Azurin, COPPER (II) ION
Authors:Zeug, M, Offenbacher, A.R, Choe, J.
Deposit date:2022-11-14
Release date:2023-01-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Electrochemical and Structural Study of the Buried Tryptophan in Azurin: Effects of Hydration and Polarity on the Redox Potential of W48.
J.Phys.Chem.B, 127, 2023
8F5L
DownloadVisualize
BU of 8f5l by Molmil
Azurin from Pseudomonas aeruginosa, Y72F/Y108F/F110L mutant
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Azurin, COPPER (II) ION
Authors:Zeug, M, Offenbacher, A.R, Choe, J.
Deposit date:2022-11-14
Release date:2023-01-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Electrochemical and Structural Study of the Buried Tryptophan in Azurin: Effects of Hydration and Polarity on the Redox Potential of W48.
J.Phys.Chem.B, 127, 2023
5A02
DownloadVisualize
BU of 5a02 by Molmil
Crystal structure of aldose-aldose oxidoreductase from Caulobacter crescentus complexed with glycerol
Descriptor: ALDOSE-ALDOSE OXIDOREDUCTASE, GLYCEROL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Taberman, H, Rouvinen, J, Parkkinen, T.
Deposit date:2015-04-17
Release date:2015-10-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and Function of Caulobacter Crescentus Aldose-Aldose Oxidoreductase.
Biochem.J., 472, 2015
8PPW
DownloadVisualize
BU of 8ppw by Molmil
Structure of human PARK7 in complex with GK16S
Descriptor: (3~{S})-1-(iminomethyl)-~{N}-pent-4-ynyl-pyrrolidine-3-carboxamide, Parkinson disease protein 7
Authors:Grethe, C, Gersch, M.
Deposit date:2023-07-10
Release date:2024-01-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:N-Cyanopiperazines as Specific Covalent Inhibitors of the Deubiquitinating Enzyme UCHL1.
Angew.Chem.Int.Ed.Engl., 63, 2024
8PQ0
DownloadVisualize
BU of 8pq0 by Molmil
Structure of human PARK7 in complex with GK16R
Descriptor: (3~{R})-3-(pent-4-ynylcarbamoyl)pyrrolidine-1-carboximidothioic acid, Parkinson disease protein 7
Authors:Grethe, C, Gersch, M.
Deposit date:2023-07-10
Release date:2024-01-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:N-Cyanopiperazines as Specific Covalent Inhibitors of the Deubiquitinating Enzyme UCHL1.
Angew.Chem.Int.Ed.Engl., 63, 2024
8PW1
DownloadVisualize
BU of 8pw1 by Molmil
Structure of human UCHL1 in complex with CG341 inhibitor
Descriptor: (2~{S})-4-(iminomethyl)-1-methyl-~{N}-[1-[4-(pent-4-ynylcarbamoyl)phenyl]imidazol-4-yl]piperazine-2-carboxamide, Ubiquitin carboxyl-terminal hydrolase isozyme L1
Authors:Grethe, C, Gersch, M.
Deposit date:2023-07-19
Release date:2024-01-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:N-Cyanopiperazines as Specific Covalent Inhibitors of the Deubiquitinating Enzyme UCHL1.
Angew.Chem.Int.Ed.Engl., 63, 2024
7NA6
DownloadVisualize
BU of 7na6 by Molmil
Cryo-EM structure of AAV True Type
Descriptor: Capsid protein VP1
Authors:Bennett, A.D, McKenna, R.
Deposit date:2021-06-19
Release date:2021-09-29
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Comparative structural, biophysical, and receptor binding study of true type and wild type AAV2.
J.Struct.Biol., 213, 2021
8A4C
DownloadVisualize
BU of 8a4c by Molmil
Structure of human Rep15:Rab3B complex.
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Rab15 effector protein, ...
Authors:Rai, A, Vetter, I.R, Goody, R.S.
Deposit date:2022-06-10
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Rep15 interacts with several Rab GTPases and has a distinct fold for a Rab effector.
Nat Commun, 13, 2022
8A4B
DownloadVisualize
BU of 8a4b by Molmil
Structure of human Rep15:Rab3B_Q81L complex.
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Rab15 effector protein, ...
Authors:Rai, A, Vetter, I.R, Goody, R.S.
Deposit date:2022-06-10
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Rep15 interacts with several Rab GTPases and has a distinct fold for a Rab effector.
Nat Commun, 13, 2022

224931

數據於2024-09-11公開中

PDB statisticsPDBj update infoContact PDBjnumon