Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7BZI
DownloadVisualize
BU of 7bzi by Molmil
The mutant variant of PNGM-1. H91 was substituted for alanine to study metal coordination.
Descriptor: Metallo-beta-lactamase PNGM-1, ZINC ION
Authors:Park, Y.S, Kang, L.W, Lee, J.H.
Deposit date:2020-04-28
Release date:2021-04-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
7BZ3
DownloadVisualize
BU of 7bz3 by Molmil
The mutant variant of PNGM-1. H257 was substituted for alanine to study substrate binding.
Descriptor: Metallo-beta-lactamase PNGM-1, ZINC ION
Authors:Park, Y.S, Kang, L.W, Lee, J.H.
Deposit date:2020-04-26
Release date:2021-04-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
3SMZ
DownloadVisualize
BU of 3smz by Molmil
Human raver1 RRM1-3 domains (residues 39-320)
Descriptor: Ribonucleoprotein PTB-binding 1, SULFATE ION
Authors:Rangarajan, E.S, Lee, J.H, Izard, T.
Deposit date:2011-06-28
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Apo raver1 structure reveals distinct RRM domain orientations.
Protein Sci., 20, 2011
7YC0
DownloadVisualize
BU of 7yc0 by Molmil
Acetylesterase (LgEstI) W.T.
Descriptor: ACETATE ION, Alpha/beta hydrolase, CHLORIDE ION
Authors:Do, H, Lee, J.H.
Deposit date:2022-06-30
Release date:2023-06-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and biochemical analysis of acetylesterase (LgEstI) from Lactococcus garvieae.
Plos One, 18, 2023
7YC4
DownloadVisualize
BU of 7yc4 by Molmil
Acetylesterase (LgEstI) F207A
Descriptor: Alpha/beta hydrolase
Authors:Do, H, Lee, J.H.
Deposit date:2022-06-30
Release date:2023-06-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure and biochemical analysis of acetylesterase (LgEstI) from Lactococcus garvieae.
Plos One, 18, 2023
3TJ5
DownloadVisualize
BU of 3tj5 by Molmil
human vinculin head domain (Vh1, residues 1-258) in complex with the vinculin binding site of the surface cell antigen 4 (sca4-VBS-N; residues 412-434) from Rickettsia rickettsii
Descriptor: Antigenic heat-stable 120 kDa protein, GLYCEROL, Vinculin
Authors:Park, H, Lee, J.H, Gouin, E, Cossart, P, Izard, T.
Deposit date:2011-08-23
Release date:2011-09-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:The rickettsia surface cell antigen 4 applies mimicry to bind to and activate vinculin.
J.Biol.Chem., 286, 2011
3TJ6
DownloadVisualize
BU of 3tj6 by Molmil
human vinculin head domain (Vh1, residues 1-258) in complex with the vinculin binding site of the surface cell antigen 4 (sca4-VBS-C; residues 812-835) from Rickettsia rickettsii
Descriptor: Antigenic heat-stable 120 kDa protein, Vinculin
Authors:Park, H, Lee, J.H, Gouin, E, Cossart, P, Izard, T.
Deposit date:2011-08-23
Release date:2011-09-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:The rickettsia surface cell antigen 4 applies mimicry to bind to and activate vinculin.
J.Biol.Chem., 286, 2011
6K84
DownloadVisualize
BU of 6k84 by Molmil
Structure of anti-prion RNA aptamer
Descriptor: RNA (25-MER)
Authors:Mashima, T, Lee, J.H, Hayashi, T, Nagata, T, Kinoshita, M, Katahira, M.
Deposit date:2019-06-11
Release date:2020-04-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Development and structural determination of an anti-PrPCaptamer that blocks pathological conformational conversion of prion protein.
Sci Rep, 10, 2020
6KRT
DownloadVisualize
BU of 6krt by Molmil
monodehydroascorbate reductase, MDHAR, from Antarctic hairgrass Deschampsia antarctica
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, monodehydroascorbate reductase
Authors:Park, A.K, Do, H, Lee, J.H, Kim, H, Choi, W, Kim, I.S, Kim, H.W.
Deposit date:2019-08-22
Release date:2020-08-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:monodehydroascorbate reductase, MDHAR, from Antarctic hairgrass Deschampsia antarctica
To Be Published
2KX6
DownloadVisualize
BU of 2kx6 by Molmil
Signaling state of Photoactive Yellow Protein
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ramachandran, P.L, Lovett, J.E, Carl, P.J, Cammarata, M, Lee, J.H, Yang, J.O, Ihee, H, Timmel, C.R, van Thor, J.
Deposit date:2010-04-27
Release date:2011-06-15
Last modified:2012-07-18
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:The short-lived signaling state of the photoactive yellow protein photoreceptor revealed by combined structural probes.
J.Am.Chem.Soc., 133, 2011
7CS1
DownloadVisualize
BU of 7cs1 by Molmil
Aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis-Complex with Coenzyme A and Neomycin
Descriptor: Aminoglycoside 2'-N-acetyltransferase, COENZYME A, NEOMYCIN
Authors:Jeong, C.S, Hwang, J, Do, H, Lee, J.H.
Deposit date:2020-08-14
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.966 Å)
Cite:Structural and biochemical analyses of an aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis.
Sci Rep, 10, 2020
7CSI
DownloadVisualize
BU of 7csi by Molmil
Aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis-Complex with Coenzyme A and Sisomicin
Descriptor: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside, Aminoglycoside 2'-N-acetyltransferase, COENZYME A
Authors:Jeong, C.S, Hwang, J, Do, H, Lee, J.H.
Deposit date:2020-08-14
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural and biochemical analyses of an aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis.
Sci Rep, 10, 2020
7CRM
DownloadVisualize
BU of 7crm by Molmil
Aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis-APO Structure
Descriptor: 1,2-ETHANEDIOL, Aminoglycoside 2'-N-acetyltransferase
Authors:Jeong, C.S, Hwang, J, Do, H, Lee, J.H.
Deposit date:2020-08-13
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.487 Å)
Cite:Structural and biochemical analyses of an aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis.
Sci Rep, 10, 2020
7CS0
DownloadVisualize
BU of 7cs0 by Molmil
Aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis-Complex with Coenzyme A and Paromomycin
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Aminoglycoside 2'-N-acetyltransferase, ...
Authors:Jeong, C.S, Hwang, J, Do, H, Lee, J.H.
Deposit date:2020-08-14
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and biochemical analyses of an aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis.
Sci Rep, 10, 2020
7CSJ
DownloadVisualize
BU of 7csj by Molmil
Aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis-Complex with Coenzyme A and Gentamicin
Descriptor: Aminoglycoside 2'-N-acetyltransferase, COENZYME A, gentamicin C1
Authors:Jeong, C.S, Hwang, J, Do, H, Lee, J.H.
Deposit date:2020-08-14
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.168 Å)
Cite:Structural and biochemical analyses of an aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis.
Sci Rep, 10, 2020
7DLS
DownloadVisualize
BU of 7dls by Molmil
Cytochrome P450 (CYP105D18) complex with papaverine
Descriptor: 1-(3,4-DIMETHOXYBENZYL)-6,7-DIMETHOXYISOQUINOLINE, Cytochrome P450 hydroxylase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Do, H, Lee, J.H.
Deposit date:2020-11-30
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Characterization of high-H 2 O 2 -tolerant bacterial cytochrome P450 CYP105D18: insights into papaverine N-oxidation.
Iucrj, 8, 2021
7DI3
DownloadVisualize
BU of 7di3 by Molmil
Cytochrome P450 (CYP105D18) W.T.
Descriptor: Cytochrome P450 hydroxylase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Do, H, Lee, J.H.
Deposit date:2020-11-18
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Characterization of high-H 2 O 2 -tolerant bacterial cytochrome P450 CYP105D18: insights into papaverine N-oxidation.
Iucrj, 8, 2021
1X3Z
DownloadVisualize
BU of 1x3z by Molmil
Structure of a peptide:N-glycanase-Rad23 complex
Descriptor: UV excision repair protein RAD23, ZINC ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, ...
Authors:Lee, J.-H, Choi, J.M, Lee, C, Yi, K.J, Cho, Y.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a peptide:N-glycanase-Rad23 complex: insight into the deglycosylation for denatured glycoproteins.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1X3W
DownloadVisualize
BU of 1x3w by Molmil
Structure of a peptide:N-glycanase-Rad23 complex
Descriptor: UV excision repair protein RAD23, ZINC ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, ...
Authors:Lee, J.-H, Choi, J.M, Lee, C, Yi, K.J, Cho, Y.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of a peptide:N-glycanase-Rad23 complex: insight into the deglycosylation for denatured glycoproteins.
Proc.Natl.Acad.Sci.Usa, 102, 2005
6WWX
DownloadVisualize
BU of 6wwx by Molmil
Crystal structure of truncated bacteriophage hyaluronan lyase HylP in complex with unsaturated hyaluronan tetra-saccharides
Descriptor: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hyaluronoglucosaminidase, NICKEL (II) ION
Authors:Deivanayagam, C, Schormann, N.
Deposit date:2020-05-09
Release date:2021-05-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of a Prokaryotic Collagen and Elucidation of Catalytic Mechanism
To Be Published
6WV2
DownloadVisualize
BU of 6wv2 by Molmil
Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of a Prokaryotic Collagen and Elucidation of Catalytic Mechanism
Descriptor: Hyaluronan Lyase, NICKEL (II) ION
Authors:Deivanayagam, C, Schormann, N.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of a Prokaryotic Collagen and Elucidation of Catalytic Mechanism
To Be Published
6WXA
DownloadVisualize
BU of 6wxa by Molmil
Crystal structure of truncated Streptococcal bacteriophage hyaluronidase complexed with unsaturated hyaluronan hexa-saccharides
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Deivanayagam, C, Schormann, N.
Deposit date:2020-05-10
Release date:2021-05-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of a Prokaryotic Collagen and Elucidation of Catalytic Mechanism
To Be Published
6X3M
DownloadVisualize
BU of 6x3m by Molmil
Crystal structure of full-length Streptococcal bacteriophage hyaluronidase in complex with unsaturated hyaluronan octa-saccharides
Descriptor: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hyaluronoglucosaminidase
Authors:Deivanayagam, C, Schormann, N.
Deposit date:2020-05-21
Release date:2021-06-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.581 Å)
Cite:Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of a Prokaryotic Collagen and Elucidation of Catalytic Mechanism
To Be Published
6Z6H
DownloadVisualize
BU of 6z6h by Molmil
HDAC-DC
Descriptor: HDA1 complex subunit 2, HDA1 complex subunit 3,HDA1 complex subunit 3, Histone deacetylase HDA1, ...
Authors:Lee, J.-H, Bollschweiler, D, Schaefer, T, Huber, R.
Deposit date:2020-05-28
Release date:2021-02-17
Method:ELECTRON MICROSCOPY (8.55 Å)
Cite:Structural basis for the regulation of nucleosome recognition and HDAC activity by histone deacetylase assemblies.
Sci Adv, 7, 2021
6Z6F
DownloadVisualize
BU of 6z6f by Molmil
HDAC-PC
Descriptor: HDA1 complex subunit 2, HDA1 complex subunit 3,HDA1 complex subunit 3, Histone deacetylase HDA1, ...
Authors:Lee, J.-H, Bollschweiler, D, Schaefer, T, Huber, R.
Deposit date:2020-05-28
Release date:2021-02-17
Method:ELECTRON MICROSCOPY (3.11 Å)
Cite:Structural basis for the regulation of nucleosome recognition and HDAC activity by histone deacetylase assemblies.
Sci Adv, 7, 2021

221051

數據於2024-06-12公開中

PDB statisticsPDBj update infoContact PDBjnumon