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Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha
Descriptor:	PHOSPHATE ION, ZINC ION, Zinc finger MYND domain-containing protein 11
Authors:	Li, Y, Ren, Y, Li, H.
Deposit date:	2013-10-08
Release date:	2014-03-05
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (1.947 Å)
Cite:	ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression Nature, 508, 2014

5XMY

Crystal structure of TAF3 PHD finger bound to H3K4me3Q5ser
Descriptor:	Histone peptide H3(1-15)K4me3Q5ser, Transcription initiation factor TFIID subunit 3, ZINC ION
Authors:	Zhao, S, Zhang, B, Li, H.
Deposit date:	2017-05-16
Release date:	2018-11-28
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.699 Å)
Cite:	Crystal structure of TAF3 PHD finger bound to H3K4me3Q5ser to be published

3HFA

Crystal Structure of Mycobacterium Tuberculosis Proteasome open-gate mutant
Descriptor:	DIMETHYLFORMAMIDE, Proteasome (Alpha subunit) PrcA, Proteasome (Beta subunit) PrcB
Authors:	Li, D, Li, H.
Deposit date:	2009-05-11
Release date:	2009-09-15
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.504 Å)
Cite:	Inhibitors selective for mycobacterial versus human proteasomes. Nature, 461, 2009

3HF9

Crystal Structure of Mycobacterium Tuberculosis Proteasome open-gate mutant modified by inhibitor GL1
Descriptor:	Proteasome (Alpha subunit) PrcA, Proteasome (Beta subunit) PrcB
Authors:	Li, D, Li, H.
Deposit date:	2009-05-11
Release date:	2009-09-15
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.878 Å)
Cite:	Inhibitors selective for mycobacterial versus human proteasomes. Nature, 461, 2009

5Y20

Crystal structure of AL1 PHD finger bound to H3K4me3
Descriptor:	PEPTIDE FROM HISTONE H3, PHD finger protein ALFIN-LIKE 1, ZINC ION
Authors:	Zhao, S, Zhang, B, Li, H.
Deposit date:	2017-07-22
Release date:	2018-01-24
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.409 Å)
Cite:	Systematic Profiling of Histone Readers in Arabidopsis thaliana. Cell Rep, 22, 2018

3MKA

Crystal Structure of Mycobacterium Tuberculosis Proteasome with propetide and an T1A mutation at beta-subunit
Descriptor:	Proteasome subunit alpha, Proteasome subunit beta
Authors:	Li, D, Li, H.
Deposit date:	2010-04-14
Release date:	2010-05-26
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (2.51 Å)
Cite:	Structural basis for the assembly and gate closure mechanisms of the Mycobacterium tuberculosis 20S proteasome. Embo J., 29, 2010

8UD9

Structure of human constitutive 20S proteasome complexed with the inhibitor TDI-8304
Descriptor:	(7S,10S,13S)-N-cyclopentyl-10-[2-(morpholin-4-yl)ethyl]-9,12-dioxo-13-(2-oxopyrrolidin-1-yl)-2-oxa-8,11-diazabicyclo[13.3.1]nonadeca-1(19),15,17-triene-7-carboxamide, Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, ...
Authors:	Hsu, H.-C, Li, H.
Deposit date:	2023-09-28
Release date:	2023-12-20
Last modified:	2024-01-03
Method:	ELECTRON MICROSCOPY (2.04 Å)
Cite:	Structures revealing mechanisms of resistance and collateral sensitivity of Plasmodium falciparum to proteasome inhibitors. Nat Commun, 14, 2023

3H6I

Crystal Structure of Mycobacterium Tuberculosis Proteasome Modified by inhibitor GL1
Descriptor:	DIMETHYLFORMAMIDE, Proteasome (Alpha subunit) PrcA, Proteasome (Beta subunit) PrcB
Authors:	Li, D, Li, H, Lin, G.
Deposit date:	2009-04-23
Release date:	2009-09-15
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.43 Å)
Cite:	Inhibitors selective for mycobacterial versus human proteasomes. Nature, 461, 2009

3MI0

Crystal Structure of Mycobacterium Tuberculosis Proteasome at 2.2 A
Descriptor:	(2R,3S,4R)-2-[(S)-(1S)-cyclohex-2-en-1-yl(hydroxy)methyl]-4-ethyl-3-hydroxy-3-methyl-5-oxopyrrolidine-2-carbaldehyde, DIMETHYLFORMAMIDE, Proteasome subunit alpha, ...
Authors:	Li, D, Li, H.
Deposit date:	2010-04-09
Release date:	2010-06-23
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Structural basis for the assembly and gate closure mechanisms of the Mycobacterium tuberculosis 20S proteasome. Embo J., 2010

3H6F

Crystal Structure of Mycobacterium Tuberculosis Proteasome Modified by inhibitor HT1171
Descriptor:	DIMETHYLFORMAMIDE, Proteasome (Alpha subunit) PrcA, Proteasome (Beta subunit) PrcB
Authors:	Li, D, Li, H, Lin, G.
Deposit date:	2009-04-23
Release date:	2009-09-15
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.51 Å)
Cite:	Inhibitors selective for mycobacterial versus human proteasomes. Nature, 461, 2009

3MFE

Crystal Structure of Mycobacterium Tuberculosis Proteasome open-gate mutant with H0 movement
Descriptor:	Proteasome subunit alpha, Proteasome subunit beta
Authors:	Li, D, Li, H.
Deposit date:	2010-04-02
Release date:	2010-06-23
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Structural basis for the assembly and gate closure mechanisms of the Mycobacterium tuberculosis 20S proteasome. Embo J., 2010

8D6Y

Structure of the Mycobacterium tuberculosis 20S proteasome bound to the ADP-bound Mpa ATPase
Descriptor:	AAA ATPase forming ring-shaped complexes, Proteasome subunit alpha, Proteasome subunit beta, ...
Authors:	Xiao, X, Li, H.
Deposit date:	2022-06-06
Release date:	2022-08-03
Last modified:	2025-05-28
Method:	ELECTRON MICROSCOPY (10 Å)
Cite:	The beta-Grasp Domain of Proteasomal ATPase Mpa Makes Critical Contacts with the Mycobacterium tuberculosis 20S Core Particle to Facilitate Degradation. Msphere, 7, 2022

8D6W

Structure of the Mycobacterium tuberculosis 20S proteasome bound to the C-terminal GQYL motif of the ADP-bound Mpa ATPase
Descriptor:	Proteasome subunit alpha, Proteasome subunit beta, Proteasome-associated ATPase
Authors:	Xiao, X, Li, H.
Deposit date:	2022-06-06
Release date:	2022-08-03
Last modified:	2025-06-04
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	The beta-Grasp Domain of Proteasomal ATPase Mpa Makes Critical Contacts with the Mycobacterium tuberculosis 20S Core Particle to Facilitate Degradation. Msphere, 7, 2022

8D6V

Structure of the Mycobacterium tuberculosis 20S proteasome bound to the C-terminal GQYL motif of the ATP-bound Mpa ATPase
Descriptor:	Proteasome subunit alpha, Proteasome subunit beta, Proteasome-associated ATPase
Authors:	Xiao, X, Li, H.
Deposit date:	2022-06-06
Release date:	2022-08-03
Last modified:	2025-05-14
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	The beta-Grasp Domain of Proteasomal ATPase Mpa Makes Critical Contacts with the Mycobacterium tuberculosis 20S Core Particle to Facilitate Degradation. Msphere, 7, 2022

8D6X

Structure of the Mycobacterium tuberculosis 20S proteasome bound to the ATP-bound Mpa ATPase
Descriptor:	AAA ATPase forming ring-shaped complexes, Proteasome subunit alpha, Proteasome subunit beta, ...
Authors:	Xiao, X, Li, H.
Deposit date:	2022-06-06
Release date:	2022-08-03
Last modified:	2025-05-21
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	The beta-Grasp Domain of Proteasomal ATPase Mpa Makes Critical Contacts with the Mycobacterium tuberculosis 20S Core Particle to Facilitate Degradation. Msphere, 7, 2022

8D4X

Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a dimeric form
Descriptor:	E3 ubiquitin-protein ligase UBR5, ZINC ION
Authors:	Wang, F, He, Q, Lin, G, Li, H.
Deposit date:	2022-06-02
Release date:	2023-04-19
Last modified:	2025-05-28
Method:	ELECTRON MICROSCOPY (2.8 Å)
Cite:	Structure of the human UBR5 E3 ubiquitin ligase. Structure, 31, 2023

1DMK

BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE HEME DOMAIN COMPLEXED WITH 4-AMINO-6-PHENYL-TETRAHYDROPTERIDINE
Descriptor:	2,4-DIAMINO-6-PHENYL-5,6,7,8,-TETRAHYDROPTERIDINE, ACETATE ION, CACODYLATE ION, ...
Authors:	Kotsonis, P, Frohlich, L.G, Raman, C.S, Li, H, Berg, M, Gerwig, R, Groehn, V, Kang, Y, Al-Masoudi, N, Taghavi-Moghadam, S, Mohr, D, Munch, U, Schnabel, J, Martasek, P, Masters, B.S, Strobel, H, Poulos, T, Matter, H, Pfleiderer, W, Schmidt, H.H.
Deposit date:	1999-12-14
Release date:	2000-12-20
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Structural basis for pterin antagonism in nitric-oxide synthase. Development of novel 4-oxo-pteridine antagonists of (6R)-5,6,7,8-tetrahydrobiopterin J.Biol.Chem., 276, 2001

4WLM

Crystal structure of mouse Xyloside xylosyltransferase 1 complexed with manganese
Descriptor:	MANGANESE (II) ION, SULFATE ION, Xyloside xylosyltransferase 1
Authors:	Yu, H, Li, H.
Deposit date:	2014-10-07
Release date:	2015-09-30
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Notch-modifying xylosyltransferase structures support an SNi-like retaining mechanism. Nat.Chem.Biol., 11, 2015

3DL4

Non-Aged Form of Mouse Acetylcholinesterase Inhibited by Tabun- Update
Descriptor:	Acetylcholinesterase, HEXAETHYLENE GLYCOL
Authors:	Carletti, E, Li, H, Li, B, Ekstrom, F, Nicolet, Y, Loiodice, M, Gillon, E, Froment, M.T, Lockridge, O, Schopfer, L.M, Masson, P, Nachon, F.
Deposit date:	2008-06-26
Release date:	2008-12-02
Last modified:	2025-03-26
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Aging of Cholinesterases Phosphylated by Tabun Proceeds through O-Dealkylation. J.Am.Chem.Soc., 130, 2008

4QBS

Crystal structure of DNMT3a ADD domain E545R mutant bound to H3T3ph peptide
Descriptor:	DNA (cytosine-5)-methyltransferase 3A, Histone H3, SULFATE ION, ...
Authors:	Wang, H, Li, H.
Deposit date:	2014-05-08
Release date:	2015-05-13
Last modified:	2024-10-30
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Engineering of a histone-recognition domain in a de novo DNA methyltransferase alters the epigenetic landscape of ESCs To be Published

3DL7

Aged Form of Mouse Acetylcholinesterase Inhibited by Tabun- Update
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholinesterase, CHLORIDE ION, ...
Authors:	Carletti, E, Li, H, Li, B, Ekstrom, F, Nicolet, Y, Loiodice, M, Gillon, E, Froment, M.T, Lockridge, O, Schopfer, L.M, Masson, P, Nachon, F.
Deposit date:	2008-06-26
Release date:	2008-12-02
Last modified:	2025-03-26
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Aging of Cholinesterases Phosphylated by Tabun Proceeds through O-Dealkylation. J.Am.Chem.Soc., 130, 2008

4QBR

Crystal structure of DNMT3a ADD domain G550D mutant bound to H3 peptide
Descriptor:	DNA (cytosine-5)-methyltransferase 3A, Histone H3, ZINC ION
Authors:	Wang, H, Li, H.
Deposit date:	2014-05-08
Release date:	2015-05-13
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (1.902 Å)
Cite:	Engineering of a histone-recognition domain in a de novo DNA methyltransferase alters the epigenetic landscape of ESCs To be Published

1DMJ

BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE HEME DOMAIN COMPLEXED WITH 5,6-CYCLIC-TETRAHYDROPTERIDINE
Descriptor:	7-AMINO-3,3A,4,5-TETRAHYDRO-8H-2-OXA-5,6,8,9B-TETRAAZA-CYCLOPENTA[A]NAPHTHALENE-1,9-DIONE, ACETATE ION, CACODYLATE ION, ...
Authors:	Kotsonis, P, Frohlich, L.G, Raman, C.S, Li, H, Berg, M, Gerwig, R, Groehn, V, Kang, Y, Al-Masoudi, N, Taghavi-Moghadam, S, Mohr, D, Munch, U, Schnabel, J, Martasek, P, Masters, B.S, Strobel, H, Poulos, T, Matter, H, Pfleiderer, W, Schmidt, H.H.
Deposit date:	1999-12-14
Release date:	2000-12-20
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (2.35 Å)
Cite:	Structural basis for pterin antagonism in nitric-oxide synthase. Development of novel 4-oxo-pteridine antagonists of (6R)-5,6,7,8-tetrahydrobiopterin J.Biol.Chem., 276, 2001

4WLZ

Crystal structure of mouse Xyloside xylosyltransferase 1 complexed with manganese and UDP
Descriptor:	MANGANESE (II) ION, SULFATE ION, URIDINE-5'-DIPHOSPHATE, ...
Authors:	Yu, H, Li, H.
Deposit date:	2014-10-08
Release date:	2015-11-04
Last modified:	2024-11-20
Method:	X-RAY DIFFRACTION (3.03 Å)
Cite:	Notch-modifying xylosyltransferase structures support an SNi-like retaining mechanism. Nat.Chem.Biol., 11, 2015

3ERC

Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase with three fragments of RNA and 3'-deoxy ATP
Descriptor:	3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase, ...
Authors:	Li, C, Li, H, Zhou, S, Poulos, T.L, Gershon, P.D.
Deposit date:	2008-10-01
Release date:	2009-06-16
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (3.21 Å)
Cite:	Polymerase Translocation with Respect to Single-Stranded Nucleic Acid: Looping or Wrapping of Primer around a Poly(A) Polymerase Structure, 17, 2009

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