Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2X42
DownloadVisualize
BU of 2x42 by Molmil
Structure of beta-glucosidase 3B from Thermotoga neapolitana in complex with alpha-D-glucose
Descriptor: BETA-GLUCOSIDASE, BROMIDE ION, alpha-D-glucopyranose
Authors:Pozzo, T, Karlsson, E.N, Logan, D.T.
Deposit date:2010-01-28
Release date:2010-02-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Structural and Functional Analysis of Beta-Glucosidase 3B from Thermotoga Neapolitana: A Thermostable 3-Domain Representative of Glycoside Hydrolase Family 3
J.Mol.Biol., 397, 2010
2X41
DownloadVisualize
BU of 2x41 by Molmil
Structure of beta-glucosidase 3B from Thermotoga neapolitana in complex with glucose
Descriptor: BETA-GLUCOSIDASE, BROMIDE ION, beta-D-glucopyranose
Authors:Pozzo, T, Karlsson, E.N, Logan, D.T.
Deposit date:2010-01-28
Release date:2010-02-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and Functional Analysis of Beta-Glucosidase 3B from Thermotoga Neapolitana: A Thermostable 3-Domain Representative of Glycoside Hydrolase Family 3
J.Mol.Biol., 397, 2010
2XJK
DownloadVisualize
BU of 2xjk by Molmil
Monomeric Human Cu,Zn Superoxide dismutase
Descriptor: COPPER (II) ION, SUPEROXIDE DISMUTASE [CU-ZN], ZINC ION
Authors:Saraboji, K, Leinartaite, L, Nordlund, A, Oliveberg, M, Logan, D.T.
Deposit date:2010-07-07
Release date:2010-09-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Folding Catalysis by Transient Coordination of Zn2+ to the Cu Ligands of the Als-Associated Enzyme Cu/Zn Superoxide Dismutase 1.
J.Am.Chem.Soc., 132, 2010
2X40
DownloadVisualize
BU of 2x40 by Molmil
Structure of beta-glucosidase 3B from Thermotoga neapolitana in complex with glycerol
Descriptor: BETA-GLUCOSIDASE, BROMIDE ION, GLYCEROL
Authors:Pozzo, T, Karlsson, E.N, Logan, D.T.
Deposit date:2010-01-28
Release date:2010-02-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.313 Å)
Cite:Structural and Functional Analysis of Beta-Glucosidase 3B from Thermotoga Neapolitana: A Thermostable 3-Domain Representative of Glycoside Hydrolase Family 3
J.Mol.Biol., 397, 2010
2XJL
DownloadVisualize
BU of 2xjl by Molmil
Monomeric Human Cu,Zn Superoxide dismutase without Cu ligands
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, SODIUM ION, ...
Authors:Saraboji, K, Leinartaite, L, Nordlund, A, Oliveberg, M, Logan, D.T.
Deposit date:2010-07-07
Release date:2010-09-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Folding Catalysis by Transient Coordination of Zn2+ to the Cu Ligands of the Als-Associated Enzyme Cu/Zn Superoxide Dismutase 1.
J.Am.Chem.Soc., 132, 2010
5OAX
DownloadVisualize
BU of 5oax by Molmil
Galectin-3c in complex with thiogalactoside derivate
Descriptor: 5,6-bis(fluoranyl)-3-[[(2~{S},3~{R},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]sulfanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]chromen-2-one, Galectin-3
Authors:Nilsson, U.J, Peterson, K, Hakansson, M, Logan, D.T.
Deposit date:2017-06-25
Release date:2018-05-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Systematic Tuning of Fluoro-galectin-3 Interactions Provides Thiodigalactoside Derivatives with Single-Digit nM Affinity and High Selectivity.
J. Med. Chem., 61, 2018
5OLK
DownloadVisualize
BU of 5olk by Molmil
Crystal structure of the ATP-cone-containing NrdB from Leeuwenhoekiella blandensis
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, ...
Authors:Hasan, M, Grinberg, A.R, Sjoberg, B.M, Logan, D.T.
Deposit date:2017-07-28
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit.
Elife, 7, 2018
5M8E
DownloadVisualize
BU of 5m8e by Molmil
Crystal structure of a GH43 arabonofuranosidase from Weissella sp. strain 142
Descriptor: Alpha-N-arabinofuranosidase, CALCIUM ION, GLYCEROL, ...
Authors:Linares-Pasten, J, Logan, D.T, Nordberg Karlsson, E.
Deposit date:2016-10-28
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional structures and functional studies of two GH43 arabinofuranosidases from Weissella sp. strain 142 and Lactobacillus brevis.
FEBS J., 284, 2017
5ODY
DownloadVisualize
BU of 5ody by Molmil
Galectin-3C in complex with dithiogalactoside derivative
Descriptor: 5,6-bis(fluoranyl)-3-[[(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]chromen-2-one, Galectin-3
Authors:Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T.
Deposit date:2017-07-07
Release date:2018-05-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.149 Å)
Cite:Systematic Tuning of Fluoro-galectin-3 Interactions Provides Thiodigalactoside Derivatives with Single-Digit nM Affinity and High Selectivity.
J. Med. Chem., 61, 2018
6Q4S
DownloadVisualize
BU of 6q4s by Molmil
Crystal structure of a-eudesmol synthase
Descriptor: CHLORIDE ION, Pentalenene synthase
Authors:Correia Cordeiro, R.S, Hakansson, M, Logan, D.T, Kourist, R.
Deposit date:2018-12-06
Release date:2018-12-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Discovery of three novel sesquiterpene synthases from Streptomyces chartreusis NRRL 3882 and crystal structure of an alpha-eudesmol synthase.
J.Biotechnol., 297, 2019
6QLT
DownloadVisualize
BU of 6qlt by Molmil
Galectin-3C in complex with fluoroaryltriazole monothiogalactoside derivative-7
Descriptor: (2~{R},3~{R},4~{S},5~{R},6~{S})-4-[4-(2-fluorophenyl)-1,2,3-triazol-1-yl]-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-oxane-3,5-diol, DI(HYDROXYETHYL)ETHER, Galectin-3
Authors:Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T.
Deposit date:2019-02-01
Release date:2019-07-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structure and Energetics of Ligand-Fluorine Interactions with Galectin-3 Backbone and Side-Chain Amides: Insight into Solvation Effects and Multipolar Interactions.
Chemmedchem, 14, 2019
6QLO
DownloadVisualize
BU of 6qlo by Molmil
Galectin-3C in complex with substituted fluoroaryltriazole monothiogalactoside derivative 1
Descriptor: (2~{R},3~{R},4~{S},5~{R},6~{S})-4-[4-[3,4-bis(fluoranyl)phenyl]-1,2,3-triazol-1-yl]-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-oxane-3,5-diol, CHLORIDE ION, Galectin-3
Authors:Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T.
Deposit date:2019-02-01
Release date:2019-07-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structure and Energetics of Ligand-Fluorine Interactions with Galectin-3 Backbone and Side-Chain Amides: Insight into Solvation Effects and Multipolar Interactions.
Chemmedchem, 14, 2019
6QLQ
DownloadVisualize
BU of 6qlq by Molmil
Galectin-3C in complex with fluoroaryltriazole monothiogalactoside derivative 4
Descriptor: (2~{R},3~{R},4~{S},5~{R},6~{S})-4-[4-(4-fluorophenyl)-1,2,3-triazol-1-yl]-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-oxane-3,5-diol, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T.
Deposit date:2019-02-01
Release date:2019-07-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.079 Å)
Cite:Structure and Energetics of Ligand-Fluorine Interactions with Galectin-3 Backbone and Side-Chain Amides: Insight into Solvation Effects and Multipolar Interactions.
Chemmedchem, 14, 2019
6QLR
DownloadVisualize
BU of 6qlr by Molmil
Galectin-3C in complex with fluoroaryltriazole monothiogalactoside derivative 5
Descriptor: (2~{R},3~{R},4~{S},5~{R},6~{S})-4-[4-[3,5-bis(fluoranyl)phenyl]-1,2,3-triazol-1-yl]-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-oxane-3,5-diol, CHLORIDE ION, Galectin-3
Authors:Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T.
Deposit date:2019-02-01
Release date:2019-07-10
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Structure and Energetics of Ligand-Fluorine Interactions with Galectin-3 Backbone and Side-Chain Amides: Insight into Solvation Effects and Multipolar Interactions.
Chemmedchem, 14, 2019
8P2C
DownloadVisualize
BU of 8p2c by Molmil
Cryo-EM structure of the anaerobic ribonucleotide reductase from Prevotella copri in its tetrameric state produced in the presence of dATP and CTP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Anaerobic ribonucleoside-triphosphate reductase, MAGNESIUM ION
Authors:Banerjee, I, Bimai, O, Sjoberg, B.M, Logan, D.T.
Deposit date:2023-05-15
Release date:2023-09-13
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Nucleotide binding to the ATP-cone in anaerobic ribonucleotide reductases allosterically regulates activity by modulating substrate binding.
Elife, 12, 2024
8P2D
DownloadVisualize
BU of 8p2d by Molmil
Cryo-EM structure of the dimeric form of the anaerobic ribonucleotide reductase from Prevotella copri produced in the presence of dATP and CTP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Anaerobic ribonucleoside-triphosphate reductase, MAGNESIUM ION
Authors:Banerjee, I, Bimai, O, Sjoberg, B.M, Logan, D.T.
Deposit date:2023-05-15
Release date:2023-09-13
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Nucleotide binding to the ATP-cone in anaerobic ribonucleotide reductases allosterically regulates activity by modulating substrate binding.
Elife, 12, 2024
8P2S
DownloadVisualize
BU of 8p2s by Molmil
Cryo-EM structure of the anaerobic ribonucleotide reductase from Prevotella copri in its dimeric, ATP/dTTP/GTP-bound state
Descriptor: Anaerobic ribonucleoside-triphosphate reductase, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Bimai, O, Banerjee, I, Sjoberg, B.M, Logan, D.T.
Deposit date:2023-05-16
Release date:2023-09-13
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Nucleotide binding to the ATP-cone in anaerobic ribonucleotide reductases allosterically regulates activity by modulating substrate binding.
Elife, 12, 2024
8P39
DownloadVisualize
BU of 8p39 by Molmil
Cryo-EM structure of the anaerobic ribonucleotide reductase from Prevotella copri in its dimeric, dGTP/ATP-bound state
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Anaerobic ribonucleoside-triphosphate reductase, ...
Authors:Bimai, O, Banerjee, I, Sjoberg, B.M, Logan, D.T.
Deposit date:2023-05-17
Release date:2023-09-13
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:Nucleotide binding to the ATP-cone in anaerobic ribonucleotide reductases allosterically regulates activity by modulating substrate binding.
Elife, 12, 2024
3O0Q
DownloadVisualize
BU of 3o0q by Molmil
Thermotoga maritima Ribonucleotide Reductase, NrdJ, in complex with dTTP, GDP and Adenosine
Descriptor: ADENOSINE, CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Larsson, K.-M, Logan, D.T, Nordlund, P.
Deposit date:2010-07-19
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis for Adenosylcobalamin Activation in AdoCbl-Dependent Ribonucleotide Reductases.
Acs Chem.Biol., 5, 2010
6F6Y
DownloadVisualize
BU of 6f6y by Molmil
Crystal structure of galectin-3 CRD in complex with galactopentaose
Descriptor: Galectin-3, beta-D-galactopyranose-(1-4)-beta-D-galactopyranose
Authors:Hakansson, M, Andersen, M.C.F, Clausen, M.H, Logan, D.T.
Deposit date:2017-12-06
Release date:2018-12-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Beta-(1-4)-d-galactans: synthesis and binding interactions with galectin-3
To Be Published
8PF9
DownloadVisualize
BU of 8pf9 by Molmil
Galectin-3C in complex with a triazolesulfane derivative
Descriptor: (2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-[oxidanyl(phenyl)-$l^{3}-sulfanyl]-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-oxane-3,4,5-triol, Galectin-3, MAGNESIUM ION, ...
Authors:Kumar, R, Mahanti, M, Nilsson, U.J, Logan, D.T.
Deposit date:2023-06-15
Release date:2023-11-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Ligand Sulfur Oxidation State Progressively Alters Galectin-3-Ligand Complex Conformations To Induce Affinity-Influencing Hydrogen Bonds.
J.Med.Chem., 66, 2023
8PFF
DownloadVisualize
BU of 8pff by Molmil
Galectin-3C in complex with a triazolesulfone derivative
Descriptor: (2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-(phenylsulfonyl)-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-oxane-3,4,5-triol, Galectin-3, MAGNESIUM ION, ...
Authors:Kumar, R, Mahanti, M, Nilsson, U.J, Logan, D.T.
Deposit date:2023-06-15
Release date:2023-11-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Ligand Sulfur Oxidation State Progressively Alters Galectin-3-Ligand Complex Conformations To Induce Affinity-Influencing Hydrogen Bonds.
J.Med.Chem., 66, 2023
3O0O
DownloadVisualize
BU of 3o0o by Molmil
Thermotoga maritima Ribonucleotide Reductase, NrdJ, in complex with dTTP, GDP and Adenosylcobalamin
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Larsson, K.-M, Logan, D.T, Nordlund, P.
Deposit date:2010-07-19
Release date:2010-07-28
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for Adenosylcobalamin Activation in AdoCbl-Dependent Ribonucleotide Reductases.
Acs Chem.Biol., 5, 2010
6GHO
DownloadVisualize
BU of 6gho by Molmil
Crystal structure of Spx in complex with YjbH
Descriptor: CHLORIDE ION, Regulatory protein Spx, UPF0413 protein GK0824
Authors:Awad, W, Logan, D.T, von Wachenfeldt, C.
Deposit date:2018-05-08
Release date:2019-04-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural Basis for YjbH Adaptor-Mediated Recognition of Transcription Factor Spx.
Structure, 27, 2019
6GHB
DownloadVisualize
BU of 6ghb by Molmil
Crystal structure of Spx in complex with YjbH (oxidized)
Descriptor: MAGNESIUM ION, Regulatory protein Spx, UPF0413 protein GK0824
Authors:Awad, W, Logan, D.T, von Wachenfeldt, C.
Deposit date:2018-05-06
Release date:2019-04-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.104 Å)
Cite:Structural Basis for YjbH Adaptor-Mediated Recognition of Transcription Factor Spx.
Structure, 27, 2019

238582

數據於2025-07-09公開中

PDB statisticsPDBj update infoContact PDBjnumon