Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5IZJ
DownloadVisualize
BU of 5izj by Molmil
Complex of PKA with the bisubstrate protein kinase inhibitor ARC-1411
Descriptor: 4-(piperazin-1-yl)-7H-pyrrolo[2,3-d]pyrimidine, 47P-AZ1-DAR-DAR, 47P-AZ1-DAR-DAR-DAR, ...
Authors:Pflug, A, Enkvist, E, Uri, A, Engh, R.A.
Deposit date:2016-03-25
Release date:2016-07-20
Last modified:2019-06-19
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Bifunctional Ligands for Inhibition of Tight-Binding Protein-Protein Interactions.
Bioconjug.Chem., 27, 2016
4XCF
DownloadVisualize
BU of 4xcf by Molmil
Crystal structure of human 4E10 Fab in complex with its peptide epitope on HIV-1 gp41; crystals cryoprotected with phosphatidylcholine (03:0 PC)
Descriptor: 4E10 Fab heavy chain, 4E10 Fab light chain, MODIFIED FRAGMENT OF HIV-1 GLYCOPROTEIN (GP41) INCLUDING THE MPER REGION 671-683, ...
Authors:Irimia, A, Stanfield, R.L, Wilson, I.A.
Deposit date:2014-12-17
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Crystallographic Identification of Lipid as an Integral Component of the Epitope of HIV Broadly Neutralizing Antibody 4E10.
Immunity, 44, 2016
4XDH
DownloadVisualize
BU of 4xdh by Molmil
Crystal Structure of Quinone Reductase II in complex with a 2-(4-methoxy-phenyl)-5-methoxy-indol-3-one molecule
Descriptor: 5-methoxy-2-(4-methoxyphenyl)-3H-indol-3-one, FLAVIN-ADENINE DINUCLEOTIDE, Ribosyldihydronicotinamide dehydrogenase [quinone], ...
Authors:Sirigu, S, Nepveu, F, Vuillard, L, Ferry, G, Isabet, T, Thompson, A, Boutin, J.A.
Deposit date:2014-12-19
Release date:2016-01-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Role of Quinone Reductase 2 in the Antimalarial Properties of Indolone-Type Derivatives.
Molecules, 22, 2017
5IZF
DownloadVisualize
BU of 5izf by Molmil
Complex of PKA with the bisubstrate protein kinase inhibitor ARC-1408
Descriptor: 6J9-ZEU-DAR-ACA-DAR-NH2, SULFATE ION, cAMP-dependent protein kinase catalytic subunit alpha
Authors:Pflug, A, Enkvist, E, Uri, A, Engh, R.A.
Deposit date:2016-03-25
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Bifunctional Ligands for Inhibition of Tight-Binding Protein-Protein Interactions.
Bioconjug.Chem., 27, 2016
4R5Q
DownloadVisualize
BU of 4r5q by Molmil
Crystal structure and nuclease activity of the CRISPR-associated Cas4 protein Pcal_0546 from Pyrobaculum calidifontis containing a [2Fe-2S] cluster
Descriptor: CRISPR-associated exonuclease, Cas4 family, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Nocek, B, Skarina, T, Lemak, S, Brown, G, Savchenko, A, Joachimiak, A, Yakunin, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-08-21
Release date:2014-09-17
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure and nuclease activity of the CRISPR-associated Cas4 protein Pcal_0546 from Pyrobaculum calidifontis containing a [2Fe-2S] cluster
To be Published
4R6O
DownloadVisualize
BU of 4r6o by Molmil
Jacalin-carbohydrate interactions. Distortion of the ligand as a determinant of affinity.
Descriptor: 1,2-ETHANEDIOL, 4-METHYL-2H-CHROMEN-2-ONE, Agglutinin alpha chain, ...
Authors:Abhinav, K.V, Sharma, K, Swaminathan, C.P, Surolia, A, Vijayan, M.
Deposit date:2014-08-26
Release date:2015-02-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity.
Acta Crystallogr.,Sect.D, 71, 2015
4I06
DownloadVisualize
BU of 4i06 by Molmil
Crystal structure of human Arginase-2 complexed with inhibitor 14
Descriptor: Arginase-2, mitochondrial, BENZAMIDINE, ...
Authors:Cousido-Siah, A, Mitschler, A, Ruiz, F.X, Whitehouse, D.L, Golebiowski, A, Ji, M, Zhang, M, Beckett, P, Sheeler, R, Andreoli, M, Conway, B, Mahboubi, K, Schroeter, H, Van Zandt, M.C, Podjarny, A.
Deposit date:2012-11-16
Release date:2013-03-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of (R)-2-Amino-6-borono-2-(2-(piperidin-1-yl)ethyl)hexanoic Acid and Congeners As Highly Potent Inhibitors of Human Arginases I and II for Treatment of Myocardial Reperfusion Injury.
J.Med.Chem., 56, 2013
3IS5
DownloadVisualize
BU of 3is5 by Molmil
Crystal structure of CDPK kinase domain from toxoplasma Gondii, TGME49_018720
Descriptor: CALCIUM ION, Calcium-dependent protein kinase, GLYCEROL, ...
Authors:Wernimont, A.K, Artz, J.D, Senisterra, G, MacKenzie, F, Hutchinson, A, Kozieradzki, I, Cossar, D, Bochkarev, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Hui, R, Lin, Y.H, Structural Genomics Consortium (SGC)
Deposit date:2009-08-25
Release date:2009-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of CDPK kinase domain from toxoplasma Gondii, TGME49_018720
To be Published
3IAH
DownloadVisualize
BU of 3iah by Molmil
Crystal Structure of Short Chain Dehydrogenase (yciK) from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 in Complex with NADP and Acetate.
Descriptor: ACETATE ION, CHLORIDE ION, ETHANOL, ...
Authors:Minasov, G, Halavaty, A, Skarina, T, Onopriyenko, O, Peterson, S.N, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-07-14
Release date:2009-07-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal Structure of Short Chain Dehydrogenase (yciK) from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 in Complex with NADP and Acetate.
TO BE PUBLISHED
6AZ1
DownloadVisualize
BU of 6az1 by Molmil
Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
Descriptor: E-site tRNA, LACK1, MAGNESIUM ION, ...
Authors:Shalev-Benami, M, Zhang, Y, Rozenberg, H, Matzov, D, Zimmerman, E, Bashan, A, Jaffe, C.L, Yonath, A, Skiniotis, G.
Deposit date:2017-09-09
Release date:2017-12-06
Last modified:2019-07-03
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin.
Nat Commun, 8, 2017
4XBG
DownloadVisualize
BU of 4xbg by Molmil
Crystal structure of human 4E10 Fab in complex with phosphatidic acid (06:0 PA): 2.73 A resolution
Descriptor: (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate, 4E10 Fab heavy chain, 4E10 Fab light chain, ...
Authors:Irimia, A, Stanfield, R.L, Wilson, I.A.
Deposit date:2014-12-16
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Crystallographic Identification of Lipid as an Integral Component of the Epitope of HIV Broadly Neutralizing Antibody 4E10.
Immunity, 44, 2016
6B44
DownloadVisualize
BU of 6b44 by Molmil
Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound target dsDNA
Descriptor: CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, CRISPR-associated protein Csy2, ...
Authors:Guo, T.W, Bartesaghi, A, Yang, H, Falconieri, V, Rao, P, Merk, A, Fox, T, Earl, L, Patel, D.J, Subramaniam, S.
Deposit date:2017-09-25
Release date:2017-10-18
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-EM Structures Reveal Mechanism and Inhibition of DNA Targeting by a CRISPR-Cas Surveillance Complex.
Cell, 171, 2017
6MN5
DownloadVisualize
BU of 6mn5 by Molmil
Crystal structure of aminoglycoside acetyltransferase AAC(3)-IVa, H154A mutant, in complex with gentamicin C1A
Descriptor: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 1,2-ETHANEDIOL, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ...
Authors:Stogios, P.J, Evdokimova, E, Kim, Y, Di Leo, R, Savchenko, A, Joachimiak, A, Satchell, K.J, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-10-01
Release date:2018-10-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structural and molecular rationale for the diversification of resistance mediated by the Antibiotic_NAT family.
Commun Biol, 5, 2022
8HY5
DownloadVisualize
BU of 8hy5 by Molmil
Structure of D-amino acid oxidase mutant R38H
Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, D-amino-acid oxidase, ...
Authors:Khan, S, Upadhyay, S, Dave, U, Kumar, A, Gomes, J.
Deposit date:2023-01-05
Release date:2023-01-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mechanistic insights into ALS patient derived mutations in D-amino acid oxidase.
Int.J.Biol.Macromol., 256, 2023
4Y1M
DownloadVisualize
BU of 4y1m by Molmil
An Escherichia coli yybP-ykoY Mn riboswitch in the Mn2+-free state
Descriptor: E. coli yybP-ykoY riboswitch, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Price, I.R, Ke, A.
Deposit date:2015-02-08
Release date:2015-04-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mn(2+)-Sensing Mechanisms of yybP-ykoY Orphan Riboswitches.
Mol.Cell, 57, 2015
8HZ1
DownloadVisualize
BU of 8hz1 by Molmil
Ambient temperature crystal structure of Escherichia coli CyaY
Descriptor: Iron-sulfur cluster assembly protein CyaY
Authors:Shafiei, A, DeMirci, H.
Deposit date:2023-01-07
Release date:2023-01-25
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ambient temperature crystal structure of Escherichia coli CyaY
To Be Published
6AYC
DownloadVisualize
BU of 6ayc by Molmil
Naegleria fowleri CYP51-itraconazole complex
Descriptor: 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one, PROTOPORPHYRIN IX CONTAINING FE, Protein CYP51
Authors:Debnath, A, Calvet, C.M, Jennings, G, Zhou, W, Aksenov, A, Luth, M, Abagyan, R, Nes, W.D, McKerrow, J.H, Podust, L.M.
Deposit date:2017-09-08
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:CYP51 is an essential drug target for the treatment of primary amoebic meningoencephalitis (PAM).
PLoS Negl Trop Dis, 11, 2017
6MRV
DownloadVisualize
BU of 6mrv by Molmil
Sialidase26 co-crystallized with DANA
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, Sialidase26
Authors:Zaramela, L.S, Martino, C, Alisson-Silva, F, Rees, S.D, Diaz, S.L, Chuzel, L, Ganatra, M.B, Taron, C.H, Zuniga, C, Chang, G, Varki, A, Zengler, K.
Deposit date:2018-10-15
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates.
Nat Microbiol, 4, 2019
8A9W
DownloadVisualize
BU of 8a9w by Molmil
Crystal structure of PulL C-ter domain
Descriptor: SULFATE ION, Type II secretion system protein L
Authors:Dazzoni, R, Li, Y, Lopez-Castilla, A, Brier, S, Mechaly, A, Cordier, F, Haouz, A, Nilges, M, Francetic, O, Bardiaux, B, Izadi-Pruneyre, N.
Deposit date:2022-06-29
Release date:2023-01-11
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.895 Å)
Cite:Structure and dynamic association of an assembly platform subcomplex of the bacterial type II secretion system.
Structure, 31, 2023
8I6V
DownloadVisualize
BU of 8i6v by Molmil
Cryo-EM structure of the polyphosphate polymerase VTC complex(Vtc4/Vtc3/Vtc1)
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, MANGANESE (II) ION, PHOSPHATE ION, ...
Authors:Mayer, A, Wu, S, Ye, S.
Deposit date:2023-01-29
Release date:2023-03-01
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Cryo-EM structure of the polyphosphate polymerase VTC reveals coupling of polymer synthesis to membrane transit.
Embo J., 42, 2023
6BAL
DownloadVisualize
BU of 6bal by Molmil
2.1 Angstrom Resolution Crystal Structure of Malate Dehydrogenase from Haemophilus influenzae in Complex with L-Malate
Descriptor: (2S)-2-hydroxybutanedioic acid, CHLORIDE ION, Malate dehydrogenase
Authors:Minasov, G, Wawrzak, Z, Skarina, T, Grimshaw, S, Satchell, K.J.F, Savchenko, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-10-13
Release date:2017-10-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:2.1 Angstrom Resolution Crystal Structure of Malate Dehydrogenase from Haemophilus influenzae in Complex with L-Malate
To Be Published
3IPQ
DownloadVisualize
BU of 3ipq by Molmil
X-ray structure of GW3965 synthetic agonist bound to the LXR-alpha
Descriptor: Nuclear receptor coactivator 1, Oxysterols receptor LXR-alpha, SULFATE ION, ...
Authors:Fradera, X, Vu, D, Nimz, O, Skene, R, Hosfield, D, Wijnands, R, Cooke, A.J, Haunso, A, King, A, Bennet, D.J, McGuire, R, Uitdehaag, J.C.M.
Deposit date:2009-08-18
Release date:2010-06-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structures of the LXRalpha LBD in its homodimeric form and implications for heterodimer signaling.
J.Mol.Biol., 399, 2010
4XCC
DownloadVisualize
BU of 4xcc by Molmil
Crystal structure of human 4E10 Fab crystalized in the presence of Phosphatidylcholine (06:0 PC); I422 space group
Descriptor: 4E10 Fab Heavy chain, 4E10 Fab light chain, GLYCEROL
Authors:Irimia, A, Stanfield, R.L, Wilson, I.A.
Deposit date:2014-12-17
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Crystallographic Identification of Lipid as an Integral Component of the Epitope of HIV Broadly Neutralizing Antibody 4E10.
Immunity, 44, 2016
3IWF
DownloadVisualize
BU of 3iwf by Molmil
The Crystal Structure of the N-terminal domain of a RpiR Transcriptional Regulator from Staphylococcus epidermidis to 1.4A
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-METHOXYETHANOL, CHLORIDE ION, ...
Authors:Stein, A.J, Sather, A, Borovilos, M, Bargassa, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-09-02
Release date:2009-09-15
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The Crystal Structure of the N-terminal domain of a RpiR Transcriptional Regulator from Staphylococcus epidermidis to 1.4A
To be Published
8A9X
DownloadVisualize
BU of 8a9x by Molmil
Crystal structure of PulM C-ter domain
Descriptor: Type II secretion system protein M
Authors:Dazzoni, R, Li, Y, Lopez-Castilla, A, Brier, S, Mechaly, A, Cordier, F, Haouz, A, Nilges, M, Francetic, O, Bardiaux, B, Izadi-Pruneyre, N.
Deposit date:2022-06-29
Release date:2023-01-25
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.523 Å)
Cite:Structure and dynamic association of an assembly platform subcomplex of the bacterial type II secretion system.
Structure, 31, 2023

222415

數據於2024-07-10公開中

PDB statisticsPDBj update infoContact PDBjnumon