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1K99
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BU of 1k99 by Molmil
Solution Structure of the first HMG box in human Upstream binding factor
Descriptor: Upstream binding factor 1
Authors:Xu, Y, Yang, W, Wu, J, Shi, Y.
Deposit date:2001-10-28
Release date:2001-11-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the first HMG box domain in human upstream binding factor.
Biochemistry, 41, 2002
1CXR
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BU of 1cxr by Molmil
AUTOMATED 2D NOESY ASSIGNMENT AND STRUCTURE CALCULATION OF CRAMBIN(S22/I25) WITH SELF-CORRECTING DISTANCE GEOMETRY BASED NOAH/DIAMOD PROGRAMS
Descriptor: CRAMBIN
Authors:Xu, Y, Wu, J, Gorenstein, D, Braun, W.
Deposit date:1999-08-30
Release date:1999-09-07
Last modified:2018-03-14
Method:SOLUTION NMR
Cite:Automated 2D NOESY assignment and structure calculation of Crambin(S22/I25) with the self-correcting distance geometry based NOAH/DIAMOD programs.
J.Magn.Reson., 136, 1999
5B7N
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BU of 5b7n by Molmil
Crystal structure of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
Descriptor: GLYCEROL, MTA/SAH nucleosidase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Xu, Y.
Deposit date:2016-06-08
Release date:2016-12-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Structural and Functional Analyses of Periplasmic 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase from Aeromonas hydrophila.
Biochemistry, 56, 2017
5B7P
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BU of 5b7p by Molmil
Structures and functional analysis of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, MTA/SAH nucleosidase
Authors:Xu, Y.
Deposit date:2016-06-08
Release date:2016-12-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structural and Functional Analyses of Periplasmic 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase from Aeromonas hydrophila.
Biochemistry, 56, 2017
5B7G
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BU of 5b7g by Molmil
Structures and functional analysis of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
Descriptor: ADENINE, GLYCEROL, MTA/SAH nucleosidase
Authors:Xu, Y.
Deposit date:2016-06-07
Release date:2017-01-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Structural and Functional Analyses of Periplasmic 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase from Aeromonas hydrophila.
Biochemistry, 56, 2017
5B7Q
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BU of 5b7q by Molmil
Structures and functional analysis of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
Descriptor: 5'-DEOXYADENOSINE, MTA/SAH nucleosidase
Authors:Xu, Y.
Deposit date:2016-06-08
Release date:2016-12-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.493 Å)
Cite:Structural and Functional Analyses of Periplasmic 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase from Aeromonas hydrophila.
Biochemistry, 56, 2017
3DW8
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BU of 3dw8 by Molmil
Structure of a Protein Phosphatase 2A Holoenzyme with B55 subunit
Descriptor: MANGANESE (II) ION, Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform, Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform, ...
Authors:Xu, Y, Chen, Y, Zhang, P, Jeffrey, P.D, Shi, Y.
Deposit date:2008-07-21
Release date:2008-10-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of a protein phosphatase 2A holoenzyme: insights into B55-mediated Tau dephosphorylation.
Mol.Cell, 31, 2008
2NPP
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BU of 2npp by Molmil
Structure of the Protein Phosphatase 2A Holoenzyme
Descriptor: MANGANESE (II) ION, Protein Phosphatase 2, regulatory subunit A (PR 65), ...
Authors:Xu, Y, Chen, Y, Xing, Y, Chao, Y, Shi, Y.
Deposit date:2006-10-28
Release date:2006-12-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the protein phosphatase 2A holoenzyme
Cell(Cambridge,Mass.), 127, 2006
1WP7
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BU of 1wp7 by Molmil
crystal structure of Nipah Virus fusion core
Descriptor: fusion protein
Authors:Xu, Y, Liu, Y, Lou, Z, Su, N, Bai, Z, Gao, G.F, Rao, Z.
Deposit date:2004-08-31
Release date:2005-11-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Nipah Virus fusion core
To be Published
1WNC
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BU of 1wnc by Molmil
Crystal structure of the SARS-CoV Spike protein fusion core
Descriptor: E2 glycoprotein
Authors:Xu, Y, Lou, Z, Liu, Y, Pang, H, Tien, P, Gao, G.F, Rao, Z.
Deposit date:2004-07-29
Release date:2004-09-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of severe acute respiratory syndrome coronavirus spike protein fusion core
J.Biol.Chem., 279, 2004
2EEP
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BU of 2eep by Molmil
Prolyl Tripeptidyl Aminopeptidase Complexed with an Inhibitor
Descriptor: Dipeptidyl aminopeptidase IV, putative, SULFATE ION, ...
Authors:Xu, Y, Nakajima, Y, Ito, K, Yoshimoto, T.
Deposit date:2007-02-16
Release date:2008-02-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
4J0E
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BU of 4j0e by Molmil
Crystal structure of 3-hydroxyacyl-CoA dehydrogenase from Caenorhadbitis elegans in P1 space group
Descriptor: Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1
Authors:Xu, Y, Sun, F, Zhai, Y.
Deposit date:2013-01-30
Release date:2014-03-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Purification, crystallization and preliminary crystallographic analysis of 3-hydroxyacyl-CoA dehydrogenase from Caenorhabditis elegans.
Acta Crystallogr.,Sect.F, 69, 2013
4J0F
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BU of 4j0f by Molmil
Crystal structure of 3-hydroxyacyl-CoA dehydrogenase from Caenorhadbitis elegans in P212121 space group
Descriptor: Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1
Authors:Xu, Y, Sun, F, Zhai, Y.
Deposit date:2013-01-30
Release date:2014-03-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Purification, crystallization and preliminary crystallographic analysis of 3-hydroxyacyl-CoA dehydrogenase from Caenorhabditis elegans.
Acta Crystallogr.,Sect.F, 69, 2013
4DK1
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BU of 4dk1 by Molmil
Crystal Structure of MacA-MexA chimeric protein, containing the Pseudomonas aeruginosa MexA alpha-hairpin domain.
Descriptor: Putative MacA, Multidrug resistance protein mexA
Authors:Xu, Y, Ha, N.C.
Deposit date:2012-02-03
Release date:2012-03-07
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (3.499 Å)
Cite:Assembly and channel opening of outer membrane protein in tripartite drug efflux pumps of Gram-negative bacteria.
J.Biol.Chem., 287, 2012
4DK0
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BU of 4dk0 by Molmil
Crystal structure of MacA from Actinobacillus actinomycetemcomitans
Descriptor: Putative MacA
Authors:Xu, Y, Piao, S, Ha, N.C.
Deposit date:2012-02-03
Release date:2012-03-07
Last modified:2015-12-09
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Assembly and channel opening of outer membrane protein in tripartite drug efflux pumps of Gram-negative bacteria.
J.Biol.Chem., 287, 2012
6VWI
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BU of 6vwi by Molmil
Head region of the closed conformation of the human type 1 insulin-like growth factor receptor ectodomain in complex with human insulin-like growth factor II.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Insulin-like growth factor II, Leucine-zippered human type 1 insulin-like growth factor receptor ectodomain
Authors:Xu, Y, Kirk, N.S, Lawrence, M.C, Croll, T.I.
Deposit date:2020-02-19
Release date:2020-05-13
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:How IGF-II Binds to the Human Type 1 Insulin-like Growth Factor Receptor.
Structure, 28, 2020
6VWG
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BU of 6vwg by Molmil
Head region of the open conformation of the human type 1 insulin-like growth factor receptor ectodomain in complex with human insulin-like growth factor II.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Insulin-like growth factor II, Leucine-zippered human type 1 insulin-like growth factor receptor ectodomain
Authors:Xu, Y, Kirk, N.S, Lawrence, M.C, Croll, T.I.
Deposit date:2020-02-19
Release date:2020-05-13
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:How IGF-II Binds to the Human Type 1 Insulin-like Growth Factor Receptor.
Structure, 28, 2020
6VWJ
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BU of 6vwj by Molmil
Leg region of the closed conformation of the human type 1 insulin-like growth factor receptor ectodomain in complex with human insulin-like growth factor II
Descriptor: Leucine-zippered human type 1 insulin-like growth factor receptor ectodomain
Authors:Xu, Y, Kirk, N.S, Lawrence, M.C, Croll, T.I.
Deposit date:2020-02-19
Release date:2020-05-13
Last modified:2020-07-22
Method:ELECTRON MICROSCOPY (4.21 Å)
Cite:How IGF-II Binds to the Human Type 1 Insulin-like Growth Factor Receptor.
Structure, 28, 2020
1NH5
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BU of 1nh5 by Molmil
AUTOMATIC ASSIGNMENT OF NMR DATA AND DETERMINATION OF THE PROTEIN STRUCTURE OF A NEW WORLD SCORPION NEUROTOXIN USING NOAH/DIAMOD
Descriptor: Neurotoxin 5
Authors:Xu, Y, Jablonsky, M.J, Jackson, P.L, Krishna, N.R, Braun, W.
Deposit date:2002-12-18
Release date:2003-01-07
Last modified:2018-01-24
Method:SOLUTION NMR
Cite:Automatic assignment of NOESY Cross peaks and determination of the protein structure of a new world scorpion neurotoxin Using NOAH/DIAMOD
J.Magn.Reson., 148, 2001
6VWH
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BU of 6vwh by Molmil
Leg region of the open conformation of the human type 1 insulin-like growth factor receptor ectodomain in complex with human insulin-like growth factor II.
Descriptor: Leucine-zippered human type 1 insulin-like growth factor receptor ectodomain
Authors:Xu, Y, Kirk, N.S, Lawrence, M.C, Croll, T.I.
Deposit date:2020-02-19
Release date:2020-05-13
Last modified:2020-07-22
Method:ELECTRON MICROSCOPY (4.26 Å)
Cite:How IGF-II Binds to the Human Type 1 Insulin-like Growth Factor Receptor.
Structure, 28, 2020
1QR6
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BU of 1qr6 by Molmil
HUMAN MITOCHONDRIAL NAD(P)-DEPENDENT MALIC ENZYME
Descriptor: MALIC ENZYME 2, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Xu, Y, Bhargava, G, Wu, H, Loeber, G, Tong, L.
Deposit date:1999-06-18
Release date:1999-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of human mitochondrial NAD(P)(+)-dependent malic enzyme: a new class of oxidative decarboxylases.
Structure, 7, 1999
2Z3W
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BU of 2z3w by Molmil
Prolyl tripeptidyl aminopeptidase mutant E636A
Descriptor: Dipeptidyl aminopeptidase IV, GLYCEROL, SULFATE ION
Authors:Xu, Y, Nakajima, Y, Ito, K, Yoshimoto, T.
Deposit date:2007-06-07
Release date:2008-02-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
2Z3Z
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BU of 2z3z by Molmil
Prolyl tripeptidyl aminopeptidase mutant E636A complexd with an inhibitor
Descriptor: Dipeptidyl aminopeptidase IV, SULFATE ION, [(2R)-1-(L-ALANYL-L-ISOLEUCYL)PYRROLIDIN-2-YL]BORONIC ACID
Authors:Xu, Y, Nakajima, Y, Ito, K, Yoshimoto, T.
Deposit date:2007-06-09
Release date:2008-02-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
1QY7
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BU of 1qy7 by Molmil
The structure of the PII protein from the cyanobacteria Synechococcus sp. PCC 7942
Descriptor: NICKEL (II) ION, Nitrogen regulatory protein P-II, SULFATE ION
Authors:Xu, Y, Carr, P.D, Clancy, P, Garcia-Dominguez, M, Forchhammer, K, Florencio, F, Tandeau de Marsac, N, Vasudevan, S.G, Ollis, D.L.
Deposit date:2003-09-09
Release date:2003-09-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structures of the PII proteins from the cyanobacteria Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803.
Acta Crystallogr.,Sect.D, 59, 2003
2H25
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BU of 2h25 by Molmil
Solution Structure of Maltose Binding Protein complexed with beta-cyclodextrin
Descriptor: Maltose-binding periplasmic protein
Authors:Xu, Y, Lin, Z, Zheng, Y, Yang, D.
Deposit date:2006-05-18
Release date:2006-10-31
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A new strategy for structure determination of large proteins in solution without deuteration
Nat.Methods, 3, 2006

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數據於2024-06-12公開中

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