Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3ZBJ
DownloadVisualize
BU of 3zbj by Molmil
Fitting results in the I-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase
Descriptor: TRAO PROTEIN
Authors:Rivera-Calzada, A, Fronzes, R, Savva, C.G, Chandran, V, Lian, P.W, Laeremans, T, Pardon, E, Steyaert, J, Remaut, H, Waksman, G, Orlova, E.V.
Deposit date:2012-11-10
Release date:2013-04-03
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:Structure of a Bacterial Type Iv Secretion Core Complex at Subnanometre Resolution.
Embo J., 32, 2013
4AG6
DownloadVisualize
BU of 4ag6 by Molmil
Structure of VirB4 of Thermoanaerobacter pseudethanolicus
Descriptor: SULFATE ION, TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LIKE PROTEIN
Authors:Wallden, K, Williams, R, Yan, J, Lian, P.W, Wang, L, Thalassinos, K, Orlova, E.V, Waksman, G.
Deposit date:2012-01-24
Release date:2012-07-04
Last modified:2012-07-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of the Virb4 ATPase, Alone and Bound to the Core Complex of a Type Iv Secretion System.
Proc.Natl.Acad.Sci.USA, 109, 2012
6SZ9
DownloadVisualize
BU of 6sz9 by Molmil
Type IV Coupling Complex (T4CC) from L. pneumophila.
Descriptor: DotY, DotZ, IcmJ (DotN), ...
Authors:Mace, K, Meir, A, Lukoyanova, N, Waksman, G.
Deposit date:2019-10-02
Release date:2020-05-13
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanism of effector capture and delivery by the type IV secretion system from Legionella pneumophila.
Nat Commun, 11, 2020
2BHM
DownloadVisualize
BU of 2bhm by Molmil
Crystal structure of VirB8 from Brucella suis
Descriptor: TYPE IV SECRETION SYSTEM PROTEIN VIRB8
Authors:Bayliss, R, Baron, C, Waksman, G.
Deposit date:2005-01-14
Release date:2005-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of Two Core Subunits of the Bacterial Type Iv Secretion System, Virb8 from Brucella Suis and Comb10 from Helicobacter Pylori
Proc.Natl.Acad.Sci.USA, 102, 2005
2GR8
DownloadVisualize
BU of 2gr8 by Molmil
Hia 1022-1098
Descriptor: Adhesin
Authors:Meng, G, Waksman, G.
Deposit date:2006-04-23
Release date:2006-05-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the outer membrane translocator domain of the Haemophilus influenzae Hia trimeric autotransporter.
Embo J., 25, 2006
2GR7
DownloadVisualize
BU of 2gr7 by Molmil
Hia 992-1098
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Adhesin
Authors:Meng, G, Waksman, G.
Deposit date:2006-04-23
Release date:2006-05-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the outer membrane translocator domain of the Haemophilus influenzae Hia trimeric autotransporter.
Embo J., 25, 2006
1A81
DownloadVisualize
BU of 1a81 by Molmil
CRYSTAL STRUCTURE OF THE TANDEM SH2 DOMAIN OF THE SYK KINASE BOUND TO A DUALLY TYROSINE-PHOSPHORYLATED ITAM
Descriptor: SYK KINASE, T-CELL SURFACE GLYCOPROTEIN CD3 EPSILON CHAIN
Authors:Fuetterer, K, Waksman, G.
Deposit date:1998-03-31
Release date:1998-10-21
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for Syk tyrosine kinase ubiquity in signal transduction pathways revealed by the crystal structure of its regulatory SH2 domains bound to a dually phosphorylated ITAM peptide.
J.Mol.Biol., 281, 1998
2OFQ
DownloadVisualize
BU of 2ofq by Molmil
NMR Solution Structure of a complex between the VirB9/VirB7 interaction domains of the pKM101 type IV secretion system
Descriptor: TraN, TraO
Authors:Harris, R, Bayliss, R, Driscoll, P.C, Waksman, G.
Deposit date:2007-01-04
Release date:2007-01-23
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of a complex between the VirB9/VirB7 interaction domains of the pKM101 type IV secretion system
Proc.Natl.Acad.Sci.Usa, 104, 2007
1B7X
DownloadVisualize
BU of 1b7x by Molmil
STRUCTURE OF HUMAN ALPHA-THROMBIN Y225I MUTANT BOUND TO D-PHE-PRO-ARG-CHLOROMETHYLKETONE
Descriptor: PROTEIN (INHIBITOR), PROTEIN (THROMBIN HEAVY CHAIN), PROTEIN (THROMBIN LIGHT CHAIN)
Authors:Caccia, S, Futterer, K, Di Cera, E, Waksman, G.
Deposit date:1999-01-25
Release date:1999-03-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Unexpected crucial role of residue 225 in serine proteases.
Proc.Natl.Acad.Sci.USA, 96, 1999
5NNY
DownloadVisualize
BU of 5nny by Molmil
Crystal structure of the phosphatase domain from the Legionella effector WipB
Descriptor: WipB
Authors:Pinotsis, N, Waksman, G, Prevost, M.S.
Deposit date:2017-04-10
Release date:2017-09-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Legionella effector WipB is a translocated Ser/Thr phosphatase that targets the host lysosomal nutrient sensing machinery.
Sci Rep, 7, 2017
2PT7
DownloadVisualize
BU of 2pt7 by Molmil
Crystal structure of Cag VirB11 (HP0525) and an inhibitory protein (HP1451)
Descriptor: Cag-alfa, Hypothetical protein
Authors:Hare, S, Fischer, W, Williams, R, Terradot, L, Bayliss, R, Haas, R, Waksman, G.
Deposit date:2007-05-08
Release date:2007-11-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification, structure and mode of action of a new regulator of the Helicobacter pylori HP0525 ATPase.
Embo J., 26, 2007
2THF
DownloadVisualize
BU of 2thf by Molmil
STRUCTURE OF HUMAN ALPHA-THROMBIN Y225F MUTANT BOUND TO D-PHE-PRO-ARG-CHLOROMETHYLKETONE
Descriptor: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, SODIUM ION, THROMBIN HEAVY CHAIN, ...
Authors:Caccia, S, Futterer, K, Di Cera, E, Waksman, G.
Deposit date:1999-01-26
Release date:1999-03-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Unexpected crucial role of residue 225 in serine proteases.
Proc.Natl.Acad.Sci.USA, 96, 1999
2UY7
DownloadVisualize
BU of 2uy7 by Molmil
Crystal structure of the P pilus rod subunit PapA
Descriptor: PAP FIMBRIAL MAJOR PILIN PROTEIN, PERIPLASMID CHAPERONE PAPD PROTEIN, SULFATE ION
Authors:Verger, D, Bullitt, E, Hultgren, S.J, Waksman, G.
Deposit date:2007-04-02
Release date:2007-05-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the P Pilus Rod Subunit Papa.
Plos Pathog., 3, 2007
2UY6
DownloadVisualize
BU of 2uy6 by Molmil
Crystal structure of the P pilus rod subunit PapA
Descriptor: PAP FIMBRIAL MAJOR PILIN PROTEIN, PERIPLASMID CHAPERONE PAPD PROTEIN
Authors:Verger, D, Bullitt, E, Hultgren, S.J, Waksman, G.
Deposit date:2007-04-02
Release date:2007-05-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the P Pilus Rod Subunit Papa.
Plos Pathog., 3, 2007
2VQI
DownloadVisualize
BU of 2vqi by Molmil
Structure of the P pilus usher (PapC) translocation pore
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, LAURYL DIMETHYLAMINE-N-OXIDE, OUTER MEMBRANE USHER PROTEIN PAPC
Authors:Remaut, H, Tang, C, Henderson, N.S, Pinkner, J.S, Wang, T, Hultgren, S.J, Thanassi, D.G, Li, H, Waksman, G.
Deposit date:2008-03-16
Release date:2008-05-27
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Fiber formation across the bacterial outer membrane by the chaperone/usher pathway.
Cell, 133, 2008
5N8O
DownloadVisualize
BU of 5n8o by Molmil
Cryo EM structure of the conjugative relaxase TraI of the F/R1 plasmid system
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA helicase I
Authors:Ilangovan, A, Zanetti, G, Waksman, G.
Deposit date:2017-02-23
Release date:2017-05-03
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM Structure of a Relaxase Reveals the Molecular Basis of DNA Unwinding during Bacterial Conjugation
Cell, 169, 2017
7OVB
DownloadVisualize
BU of 7ovb by Molmil
L. pneumophila Type IV Coupling Complex (T4CC) with density for DotY N-terminal and middle domains
Descriptor: DotY, DotZ, IcmJ (DotN), ...
Authors:Mace, K, Meir, A, Lukoyanova, N, Waksman, G.
Deposit date:2021-06-14
Release date:2021-12-01
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:Proteins DotY and DotZ modulate the dynamics and localization of the type IVB coupling complex of Legionella pneumophila.
Mol.Microbiol., 117, 2022
3CRF
DownloadVisualize
BU of 3crf by Molmil
Electron Microscopy model of the Saf Pilus- Type B
Descriptor: Outer membrane protein
Authors:Salih, O, Remaut, H, Waksman, G, Orlova, E.V.
Deposit date:2008-04-07
Release date:2008-05-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Structural analysis of the Saf pilus by electron microscopy and image processing.
J.Mol.Biol., 379, 2008
3CL3
DownloadVisualize
BU of 3cl3 by Molmil
Crystal Structure of a vFLIP-IKKgamma complex: Insights into viral activation of the IKK signalosome
Descriptor: NF-kappa-B essential modulator, ORF K13
Authors:Bagneris, C, Ageichik, A.V, Cronin, N, Boshoff, C, Waksman, G, Barrett, T.
Deposit date:2008-03-18
Release date:2008-06-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of a vFlip-IKKgamma complex: insights into viral activation of the IKK signalosome.
Mol.Cell, 30, 2008
3CRE
DownloadVisualize
BU of 3cre by Molmil
Electron Microscopy model of the Saf Pilus- Type A
Descriptor: Outer membrane protein
Authors:Salih, O, Remaut, H, Waksman, G, Orlova, E.V.
Deposit date:2008-04-07
Release date:2008-05-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Structural analysis of the Saf pilus by electron microscopy and image processing.
J.Mol.Biol., 379, 2008
3JQO
DownloadVisualize
BU of 3jqo by Molmil
Crystal structure of the outer membrane complex of a type IV secretion system
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, LAURYL DIMETHYLAMINE-N-OXIDE, TraF protein, ...
Authors:Chandran, V, Fronzes, R, Duquerroy, S, Cronin, N, Navaza, J, Waksman, G.
Deposit date:2009-09-07
Release date:2009-12-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the outer membrane complex of a type IV secretion system
Nature, 462, 2009
3KTQ
DownloadVisualize
BU of 3ktq by Molmil
CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), ...
Authors:Li, Y, Waksman, G.
Deposit date:1998-07-28
Release date:1999-01-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998
3LFU
DownloadVisualize
BU of 3lfu by Molmil
Crystal Structure of E. coli UvrD
Descriptor: DNA helicase II, SULFATE ION
Authors:Korolev, S, Waksman, G, Lohman, T.M.
Deposit date:2010-01-18
Release date:2011-02-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Rotations of the 2B sub-domain of E. coli UvrD helicase/translocase coupled to nucleotide and DNA binding.
J.Mol.Biol., 411, 2011
1EKB
DownloadVisualize
BU of 1ekb by Molmil
THE SERINE PROTEASE DOMAIN OF ENTEROPEPTIDASE BOUND TO INHIBITOR VAL-ASP-ASP-ASP-ASP-LYS-CHLOROMETHANE
Descriptor: ENTEROPEPTIDASE, VAL-ASP-ASP-ASP-ASP-LYK PEPTIDE, ZINC ION
Authors:Fuetterer, K, Lu, D, Sadler, J.E, Waksman, G.
Deposit date:1999-05-02
Release date:1999-10-14
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of enteropeptidase light chain complexed with an analog of the trypsinogen activation peptide.
J.Mol.Biol., 292, 1999
1EYG
DownloadVisualize
BU of 1eyg by Molmil
Crystal structure of chymotryptic fragment of E. coli ssb bound to two 35-mer single strand DNAS
Descriptor: SINGLE STRANDED 28-MER OF D(C), SINGLE-STRAND DNA-BINDING PROTEIN
Authors:Raghunathan, S, Waksman, G.
Deposit date:2000-05-06
Release date:2000-08-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the DNA binding domain of E. coli SSB bound to ssDNA.
Nat.Struct.Biol., 7, 2000

220472

数据于2024-05-29公开中

PDB statisticsPDBj update infoContact PDBjnumon