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De novo synthetic protein DIG14 (tetragonal space group)
Descriptor:	De novo synthetic protein DIG14
Authors:	Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X.
Deposit date:	2021-10-21
Release date:	2022-10-12
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	De novo design of immunoglobulin-like domains Nat Commun, 13, 2022

7UHC

SARS-CoV-2 spike in complex with AHB2-2GS-SB175
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Multivalent miniprotein inhibitor AHB2-2GS-SB175, ...
Authors:	Park, Y.J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
Deposit date:	2022-03-26
Release date:	2022-06-08
Last modified:	2024-05-08
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice. Sci Transl Med, 14, 2022

7UHB

SARS-CoV-2 spike in complex with AHB2-2GS-SB175 (local refinement of the RBD and AHB2)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Multivalent miniprotein inhibitor AHB2-2GS-SB175, Spike glycoprotein
Authors:	Park, Y.J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
Deposit date:	2022-03-26
Release date:	2022-06-08
Last modified:	2024-05-08
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice. Sci Transl Med, 14, 2022

4W4M

Crystal structure of PrgK 19-92
Descriptor:	Lipoprotein PrgK
Authors:	Bergeron, J.R.C, Strynadka, N.C.J.
Deposit date:	2014-08-15
Release date:	2014-10-29
Last modified:	2023-12-27
Method:	X-RAY DIFFRACTION (3.2 Å)
Cite:	The Modular Structure of the Inner-Membrane Ring Component PrgK Facilitates Assembly of the Type III Secretion System Basal Body. Structure, 23, 2015

6VFJ

De novo designed icosahedral nanoparticle I53_dn5
Descriptor:	I53_dn5A, I53_dn5B
Authors:	Antanasijevic, A, Ward, A.B.
Deposit date:	2020-01-05
Release date:	2020-08-12
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (5.35 Å)
Cite:	Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife, 9, 2020

6VFH

De novo designed tetrahedral nanoparticle T33_dn10
Descriptor:	T33_dn10A, T33_dn10B
Authors:	Antanasijevic, A, Ward, A.B.
Deposit date:	2020-01-05
Release date:	2020-08-12
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (3.86 Å)
Cite:	Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife, 9, 2020

6VFK

De novo designed tetrahedral nanoparticle T33_dn10 displaying 4 copies of BG505-SOSIP trimer on the surface
Descriptor:	BG505-SOSIP-T33_dn10A, T33_dn10B
Authors:	Antanasijevic, A, Ward, A.B.
Deposit date:	2020-01-05
Release date:	2020-07-22
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (4.25 Å)
Cite:	Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens. Plos Pathog., 16, 2020

6VFI

De novo designed octahedral nanoparticle O43_dn18
Descriptor:	O43_dn18A, O43_dn18B
Authors:	Antanasijevic, A, Ward, A.B.
Deposit date:	2020-01-05
Release date:	2020-08-12
Last modified:	2020-08-19
Method:	ELECTRON MICROSCOPY (4.54 Å)
Cite:	Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife, 9, 2020

6VFL

BG505-SOSIP model reconstructed by subparticle extraction and refinement from a tetrahedral nanoparticle T33_dn10
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505-SOSIPv5.2(7S) - gp120, ...
Authors:	Antanasijevic, A, Ward, A.B.
Deposit date:	2020-01-05
Release date:	2020-07-22
Last modified:	2020-08-26
Method:	ELECTRON MICROSCOPY (4.14 Å)
Cite:	Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens. Plos Pathog., 16, 2020

8FBI

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_39
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.61 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBJ

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_60
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.25 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBN

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_73
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.04 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBO

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_102
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.4 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBK

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_65
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.15 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

7RDH

Crystal structure of the de novo designed binding protein H3mb in complex with the 1968 influenza A virus hemagglutinin
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, De novo designed protein H3mb, ...
Authors:	Kadam, R.U, Wilson, I.A.
Deposit date:	2021-07-09
Release date:	2022-05-04
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.75 Å)
Cite:	Design of protein-binding proteins from the target structure alone. Nature, 605, 2022

8Q1O

S-layer protein SlpA from Lactobacillus amylovorus, domain I (aa 32-209), important for Self-assembly
Descriptor:	PHOSPHATE ION, S-layer
Authors:	Sagmeister, T, Grininger, C, Eder, M, Pavkov-Keller, T.
Deposit date:	2023-08-01
Release date:	2023-09-06
Method:	X-RAY DIFFRACTION (3.401 Å)
Cite:	Surface Layer Proteins of Lactobacilli To Be Published

7QLD

Crystal structure of S-layer protein SlpA from Lactobacillus acidophilus, domain I, Co-crystallization with HgCl2, Mutation Ser146Cys, (aa 32-198)
Descriptor:	CHLORIDE ION, MERCURY (II) ION, S-layer protein
Authors:	Sagmeister, T, Vejzovic, D, Eder, M, Dordic, A, Pavkov-Keller, T.
Deposit date:	2021-12-20
Release date:	2022-12-28
Method:	X-RAY DIFFRACTION (2.153 Å)
Cite:	The self-assembly of the S-layer protein from Lactobacilli acidophilus To Be Published

7QLE

Crystal structure of S-layer protein SlpA from Lactobacillus acidophilus, domain I (aa 32-198)
Descriptor:	S-layer protein
Authors:	Sagmeister, T, Eder, M, Vejzovic, D, Dordic, A, Pavkov-Keller, T.
Deposit date:	2021-12-20
Release date:	2022-12-28
Last modified:	2024-01-31
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	The self-assembly of the S-layer protein from Lactobacilli acidophilus To Be Published

7QLH

Crystal structure of S-layer protein SlpA from Lactobacillus amylovorus, domain I (aa 48-213)
Descriptor:	PHOSPHATE ION, S-layer, SODIUM ION
Authors:	Grininger, C, Sagmeister, T, Eder, E, Vejzovic, D, Pavkov-Keller, T.
Deposit date:	2021-12-20
Release date:	2022-12-28
Last modified:	2024-01-31
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	The self-assembly of the S-layer protein from Lactobacilli acidophilus to be published

8CTO

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (B-CT conformation)
Descriptor:	Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA
Authors:	Ramelot, T.A, Tejero, R, Montelione, G.T.
Deposit date:	2022-05-16
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

8CUN

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)
Descriptor:	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU
Authors:	Ramelot, T.A, Tejero, R, Montelione, G.T.
Deposit date:	2022-05-17
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

8CWA

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TC conformation, 53%)
Descriptor:	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU
Authors:	Ramelot, T.A, Tejero, R, Montelione, G.T.
Deposit date:	2022-05-18
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

6P6F

BG505 SOSIP-I53-50NP
Descriptor:	I53-50A.1NT1, I53-50B.4PT1
Authors:	Berndsen, Z.T, Ward, A.B.
Deposit date:	2019-06-03
Release date:	2019-06-19
Last modified:	2019-12-18
Method:	ELECTRON MICROSCOPY (4.5 Å)
Cite:	Enhancing and shaping the immunogenicity of native-like HIV-1 envelope trimers with a two-component protein nanoparticle. Nat Commun, 10, 2019

8AH9

De novo retro-aldolase RAbetaB-16.1
Descriptor:	BENZOIC ACID, RAbetaB-16.1
Authors:	Mittl, P, Oualb Chaib, A, Hilvert, D.
Deposit date:	2022-07-21
Release date:	2023-08-16
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.747 Å)
Cite:	Design and optimization of enzymatic activity in a de novo beta-barrel scaffold. Protein Sci., 31, 2022

8SZZ

CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Descriptor:	O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION
Authors:	Weidle, C, Borst, A.
Deposit date:	2023-05-30
Release date:	2023-11-01
Last modified:	2023-12-27
Method:	ELECTRON MICROSCOPY (2.9 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

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Displayed results:	25
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