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2DR9
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BU of 2dr9 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDCC
Descriptor: CCA-adding enzyme, SULFATE ION, tRNA (34-MER)
Authors:Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
Deposit date:2006-06-08
Release date:2006-11-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DEU
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BU of 2deu by Molmil
Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state
Descriptor: ADENOSINE MONOPHOSPHATE, SULFATE ION, tRNA, ...
Authors:Numata, T, Ikeuchi, Y, Fukai, S, Suzuki, T, Nureki, O.
Deposit date:2006-02-17
Release date:2006-08-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Snapshots of tRNA sulphuration via an adenylated intermediate
Nature, 442, 2006
2E7S
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BU of 2e7s by Molmil
Crystal structure of the yeast Sec2p GEF domain
Descriptor: Rab guanine nucleotide exchange factor SEC2
Authors:Fukai, S, Sato, Y, Nureki, O.
Deposit date:2007-01-12
Release date:2007-02-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Asymmetric Coiled-Coil Structure with Guanine Nucleotide Exchange Activity
Structure, 15, 2007
2EF1
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BU of 2ef1 by Molmil
Crystal structure of the extracellular domain of human CD38
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADP-ribosyl cyclase 1
Authors:Kukimoto-Niino, M, Nureki, O, Murayama, K, Shirouzu, M, Katada, T, Hara-Yokoyama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-20
Release date:2007-02-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the extracellular domain of human CD38
To be Published
2EQB
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BU of 2eqb by Molmil
Crystal structure of the Rab GTPase Sec4p, the Sec2p GEF domain, and phosphate complex
Descriptor: PHOSPHATE ION, Rab guanine nucleotide exchange factor SEC2, Ras-related protein SEC4
Authors:Sato, Y, Fukai, S, Ishitani, R, Nureki, O.
Deposit date:2007-03-30
Release date:2007-05-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the Sec4p{middle dot}Sec2p complex in the nucleotide exchanging intermediate state
Proc.Natl.Acad.Sci.Usa, 104, 2007
2DRA
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BU of 2dra by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDCC and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CCA-adding enzyme, MAGNESIUM ION, ...
Authors:Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
Deposit date:2006-06-08
Release date:2006-11-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR5
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BU of 2dr5 by Molmil
Complex structure of CCA adding enzyme with mini-helix lacking CCA
Descriptor: CCA-adding enzyme, SULFATE ION, tRNA (32-MER)
Authors:Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
Deposit date:2006-06-08
Release date:2006-10-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DRB
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BU of 2drb by Molmil
Complex structure of CCA-adding enzyme with tRNAminiCCA
Descriptor: CCA-adding enzyme, SULFATE ION, tRNA (35-MER)
Authors:Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
Deposit date:2006-06-08
Release date:2006-11-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR7
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BU of 2dr7 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDC
Descriptor: CCA-adding enzyme, SULFATE ION, tRNA (33-MER)
Authors:Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
Deposit date:2006-06-08
Release date:2006-11-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DVI
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BU of 2dvi by Molmil
Complex structure of CCA-adding enzyme, mini-DCC and CTP
Descriptor: CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
Deposit date:2006-07-31
Release date:2006-11-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
4YZI
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BU of 4yzi by Molmil
Crystal structure of blue-shifted channelrhodopsin mutant (T198G/G202A)
Descriptor: OLEIC ACID, RETINAL, Sensory opsin A,Archaeal-type opsin 2, ...
Authors:Kato, H.E, Kamiya, M, Ishitani, R, Hayashi, S, Nureki, O.
Deposit date:2015-03-25
Release date:2015-05-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Atomistic design of microbial opsin-based blue-shifted optogenetics tools.
Nat Commun, 6, 2015
1IYW
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BU of 1iyw by Molmil
Preliminary Structure of Thermus thermophilus Ligand-Free Valyl-tRNA Synthetase
Descriptor: Valyl-tRNA Synthetase
Authors:Fukai, S, Nureki, O, Sekine, S, Shimada, A, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-09-10
Release date:2003-06-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (4 Å)
Cite:Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase
RNA, 9, 2003
1IUG
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BU of 1iug by Molmil
The crystal structure of aspartate aminotransferase which belongs to subgroup IV from Thermus thermophilus
Descriptor: PHOSPHATE ION, putative aspartate aminotransferase
Authors:Katsura, Y, Shirouzu, M, Yamaguchi, H, Ishitani, R, Nureki, O, Kuramitsu, S, Hayashi, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-04
Release date:2003-11-25
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV.
Proteins, 55, 2004
1J1V
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BU of 1j1v by Molmil
Crystal structure of DnaA domainIV complexed with DnaAbox DNA
Descriptor: 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3', 5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3', Chromosomal replication initiator protein dnaA
Authors:Fujikawa, N, Kurumizaka, H, Nureki, O, Terada, T, Shirouzu, M, Katayama, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-12-18
Release date:2003-04-22
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of replication origin recognition by the DnaA protein
NUCLEIC ACIDS RES., 31, 2003
1J3E
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BU of 1j3e by Molmil
Crystal Structure of the E.coli SeqA protein complexed with N6-methyladenine- guanine mismatch DNA
Descriptor: 5'-D(*AP*AP*GP*GP*(6MA)P*TP*CP*CP*AP*A)-3', 5'-D(*TP*TP*GP*GP*AP*GP*CP*CP*TP*T)-3', SeqA protein
Authors:Fujikawa, N, Kurumizaka, H, Nureki, O, Tanaka, Y, Yamazoe, M, Hiraga, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-01-24
Release date:2004-05-18
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein
Nucleic Acids Res., 32, 2004
5AXW
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BU of 5axw by Molmil
Crystal structure of Staphylococcus aureus Cas9 in complex with sgRNA and target DNA (TTGGGT PAM)
Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, DNA (28-MER), ...
Authors:Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2015-08-01
Release date:2015-09-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of Staphylococcus aureus Cas9.
Cell, 162, 2015
5B2O
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BU of 5b2o by Molmil
Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGG PAM)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Hirano, H, Nishimasu, H, Nakane, T, Ishitani, R, Nureki, O.
Deposit date:2016-02-01
Release date:2016-03-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and Engineering of Francisella novicida Cas9
Cell, 164, 2016
1HLV
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BU of 1hlv by Molmil
CRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNA
Descriptor: CENP-B BOX DNA, MAJOR CENTROMERE AUTOANTIGEN B
Authors:Tanaka, Y, Nureki, O, Kurumizaka, H, Fukai, S, Kawaguchi, S, Ikuta, M, Iwahara, J, Okazaki, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-12-04
Release date:2002-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA.
EMBO J., 20, 2001
5AYN
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BU of 5ayn by Molmil
Crystal structure of a bacterial homologue of iron transporter ferroportin in outward-facing state
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, POTASSIUM ION, Solute carrier family 39 (Iron-regulated transporter)
Authors:Taniguchi, R, Kato, H.E, Font, J, Deshpande, C.N, Ishitani, R, Jormakka, M, Nureki, O.
Deposit date:2015-08-25
Release date:2015-11-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Outward- and inward-facing structures of a putative bacterial transition-metal transporter with homology to ferroportin
Nat Commun, 6, 2015
5B2R
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BU of 5b2r by Molmil
Crystal structure of the Streptococcus pyogenes Cas9 VQR variant in complex with sgRNA and target DNA (TGA PAM)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CRISPR-associated endonuclease Cas9, ...
Authors:Hirano, S, Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2016-02-02
Release date:2016-03-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Altered PAM Specificities of Engineered CRISPR-Cas9
Mol.Cell, 61, 2016
5B83
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BU of 5b83 by Molmil
Crystal structure of Optineurin UBAN in complex with linear ubiquitin
Descriptor: Optineurin, tetra ubiquitin
Authors:Ishii, R, Nureki, O.
Deposit date:2016-06-12
Release date:2016-09-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.694 Å)
Cite:Linear ubiquitination is involved in the pathogenesis of optineurin-associated amyotrophic lateral sclerosis
Nat Commun, 7, 2016
5AYO
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BU of 5ayo by Molmil
Crystal structure of a bacterial homologue of iron transporter ferroportin in inward-facing state
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, POTASSIUM ION, Solute carrier family 39 (Iron-regulated transporter), ...
Authors:Taniguchi, R, Kato, H.E, Font, J, Deshpande, C.N, Ishitani, R, Jormakka, M, Nureki, O.
Deposit date:2015-08-25
Release date:2015-11-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Outward- and inward-facing structures of a putative bacterial transition-metal transporter with homology to ferroportin
Nat Commun, 6, 2015
5AYM
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BU of 5aym by Molmil
Crystal structure of a bacterial homologue of iron transporter ferroportin in outward-facing state with soaked iron
Descriptor: FE (II) ION, Solute carrier family 39 (Iron-regulated transporter)
Authors:Taniguchi, R, Kato, H.E, Font, J, Deshpande, C.N, Ishitani, R, Jormakka, M, Nureki, O.
Deposit date:2015-08-25
Release date:2015-11-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Outward- and inward-facing structures of a putative bacterial transition-metal transporter with homology to ferroportin
Nat Commun, 6, 2015
1HZD
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BU of 1hzd by Molmil
CRYSTAL STRUCTURE OF HUMAN AUH PROTEIN, AN RNA-BINDING HOMOLOGUE OF ENOYL-COA HYDRATASE
Descriptor: AU-BINDING PROTEIN/ENOYL-COA HYDRATASE
Authors:Kurimoto, K, Fukai, S, Nureki, O, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-01-24
Release date:2001-12-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of human AUH protein, a single-stranded RNA binding homolog of enoyl-CoA hydratase.
Structure, 9, 2001
1IT8
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BU of 1it8 by Molmil
Crystal structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii complexed with archaeosine precursor, preQ0
Descriptor: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, MAGNESIUM ION, ZINC ION, ...
Authors:Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-01-11
Release date:2002-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002

238582

数据于2025-07-09公开中

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