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8Q04
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BU of 8q04 by Molmil
Chlorella sorokiniana Rubisco: D4 symmetry imposed
Descriptor: Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small subunit, chloroplastic
Authors:Barrett, J, Blaza, J.N, Mackinder, L.C.M.
Deposit date:2023-07-27
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (2.39 Å)
Cite:A promiscuous mechanism to phase separate eukaryotic carbon fixation
To Be Published
8Q05
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BU of 8q05 by Molmil
Chlorella sorokiniana Rubisco with CsLinker (alpha3-alpha4) bound: D4 symmetry expanded
Descriptor: CsLinker (alpha3-alpha4), Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small subunit, ...
Authors:Barrett, J, Blaza, J.N, Mackinder, L.C.M.
Deposit date:2023-07-27
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:A promiscuous mechanism to phase separate eukaryotic carbon fixation
To Be Published
3FZD
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BU of 3fzd by Molmil
Mutation of Asn28 disrupts the enzymatic activity and dimerization of SARS 3CLpro
Descriptor: 3C-like proteinase
Authors:Barrila, J, Gabelli, S, Bacha, U, Amzel, L.M, Freire, E.
Deposit date:2009-01-25
Release date:2010-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Mutation of Asn28 disrupts the dimerization and enzymatic activity of SARS 3CL(pro) .
Biochemistry, 49, 2010
7Y72
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BU of 7y72 by Molmil
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Descriptor: Fab E7 heavy chain, Fab E7 light chain, Spike glycoprotein
Authors:Chia, W.N, Tan, C.W, Tan, A.W.K, Young, B, Starr, T.N, Lopez, E, Fibriansah, G, Barr, J, Cheng, S, Yeoh, A.Y.Y, Yap, W.C, Lim, B.L, Ng, T.S, Sia, W.R, Zhu, F, Chen, S, Zhang, J, Greaney, A.J, Chen, M, Au, G.G, Paradkar, P, Peiris, M, Chung, A.W, Bloom, J.D, Lye, D, Lok, S.M, Wang, L.F.
Deposit date:2022-06-21
Release date:2023-08-02
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (4.03 Å)
Cite:Potent pan huACE2-dependent sarbecovirus neutralizing monoclonal antibodies isolated from a BNT162b2-vaccinated SARS survivor.
Sci Adv, 9, 2023
7Y71
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BU of 7y71 by Molmil
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab E7 heavy chain, ...
Authors:Chia, W.N, Tan, C.W, Tan, A.W.K, Young, B, Starr, T.N, Lopez, E, Fibriansah, G, Barr, J, Cheng, S, Yeoh, A.Y.Y, Yap, W.C, Lim, B.L, Ng, T.S, Sia, W.R, Zhu, F, Chen, S, Zhang, J, Greaney, A.J, Chen, M, Au, G.G, Paradkar, P, Peiris, M, Chung, A.W, Bloom, J.D, Lye, D, Lok, S.M, Wang, L.F.
Deposit date:2022-06-21
Release date:2023-08-02
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Potent pan huACE2-dependent sarbecovirus neutralizing monoclonal antibodies isolated from a BNT162b2-vaccinated SARS survivor.
Sci Adv, 9, 2023
4V69
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BU of 4v69 by Molmil
Ternary complex-bound E.coli 70S ribosome.
Descriptor: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Villa, E, Sengupta, J, Trabuco, L.G, LeBarron, J, Baxter, W.T, Shaikh, T.R, Grassucci, R.A, Nissen, P, Ehrenberg, M, Schulten, K, Frank, J.
Deposit date:2008-12-11
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
Proc.Natl.Acad.Sci.USA, 106, 2009
4UPD
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BU of 4upd by Molmil
Open conformation of O. piceae sterol esterase mutant I544W
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, STEROL ESTERASE, TRIETHYLENE GLYCOL, ...
Authors:Gutierrez-Fernandez, J, Vaquero, M.E, Prieto, A, Barriuso, J, Gonzalez, M.J, Hermoso, J.A.
Deposit date:2014-06-16
Release date:2014-09-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of Ophiostoma Piceae Sterol Esterase: Structural Insights Into Activation Mechanism and Product Release.
J.Struct.Biol., 187, 2014
5K0W
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BU of 5k0w by Molmil
Crystal structure of the metallo-beta-lactamase GOB-18 from Elizabethkingia meningoseptica
Descriptor: CHLORIDE ION, Class B carbapenemase GOB-18, GLYCEROL, ...
Authors:Buschiazzo, A, Larrieux, N, Vila, A.J, Lisa, M.N, Moran-Barrio, J.
Deposit date:2016-05-17
Release date:2016-08-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal Structure of the Metallo-beta-Lactamase GOB in the Periplasmic Dizinc Form Reveals an Unusual Metal Site.
Antimicrob.Agents Chemother., 60, 2016
1TW9
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BU of 1tw9 by Molmil
Glutathione Transferase-2, apo form, from the nematode Heligmosomoides polygyrus
Descriptor: glutathione S-transferase 2
Authors:Schuller, D.J, Liu, Q, Kriksunov, I.A, Campbell, A.M, Barrett, J, Brophy, P.M, Hao, Q.
Deposit date:2004-06-30
Release date:2004-08-03
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of a new class of glutathione transferase from the model human hookworm nematode Heligmosomoides polygyrus.
Proteins, 61, 2005
3DG4
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BU of 3dg4 by Molmil
Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF1-bound termination complex
Descriptor: 16S Ribosomal RNA from E. coli, 23S RibosomaL RNA from E. coli
Authors:Gao, H, LeBarron, J, Frank, J.
Deposit date:2008-06-12
Release date:2009-02-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (12.8 Å)
Cite:Ribosomal Dynamics: Intrinsic Instability of a Moleculaar Machine
To be published
3DG0
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BU of 3dg0 by Molmil
Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of EF-G-bound translocation complex
Descriptor: 16S Ribosomal RNA from E. coli, 23S Ribosomal RNA from E. coli
Authors:Gao, H, LeBarron, J, Frank, J.
Deposit date:2008-06-12
Release date:2009-02-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Ribosomal Dynamics: Intrinsic Instability of a Moleculaar Machine
To be published
3DG5
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BU of 3dg5 by Molmil
Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF3-bound termination complex
Descriptor: 16S Ribosomal RNA from E. coli, 23S Ribosomal RNA from E. coli
Authors:Gao, H, LeBarron, J, Frank, J.
Deposit date:2008-06-12
Release date:2009-02-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (15.5 Å)
Cite:Ribosomal Dynamics: Intrinsic Instability of a Moleculaar Machine
To be published
3DG2
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BU of 3dg2 by Molmil
Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of a pretranslocation complex
Descriptor: 16S Ribosomal RNA from E. coli, 23S Ribosomal RNA from E. coli
Authors:Gao, H, LeBarron, J, Frank, J.
Deposit date:2008-06-12
Release date:2009-02-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Ribosomal Dynamics: Intrinsic Instability of a Moleculaar Machine
To be published
1JYF
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BU of 1jyf by Molmil
Structure of the Dimeric Lac Repressor with an 11-residue C-terminal Deletion.
Descriptor: GLYCEROL, Lactose Operon Repressor
Authors:Bell, C.E, Barry, J, Matthews, K.S, Lewis, M.
Deposit date:2001-09-12
Release date:2001-10-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of a variant of lac repressor with increased thermostability and decreased affinity for operator.
J.Mol.Biol., 313, 2001
1JYE
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BU of 1jye by Molmil
Structure of a Dimeric Lac Repressor with C-terminal Deletion and K84L Substitution
Descriptor: GLYCEROL, Lactose Operon Repressor
Authors:Bell, C.E, Barry, J, Matthews, K.S, Lewis, M.
Deposit date:2001-09-12
Release date:2001-10-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of a variant of lac repressor with increased thermostability and decreased affinity for operator.
J.Mol.Biol., 313, 2001
4BE4
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BU of 4be4 by Molmil
Closed conformation of O. piceae sterol esterase
Descriptor: 1,4-DIETHYLENE DIOXIDE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gutierrez-Fernandez, J, Vaquero, M.E, Prieto, A, Barriuso, J, Gonzalez, M.J, Hermoso, J.A.
Deposit date:2013-03-05
Release date:2014-03-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of Ophiostoma Piceae Sterol Esterase: Structural Insights Into Activation Mechanism and Product Release.
J.Struct.Biol., 187, 2014
4BE9
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BU of 4be9 by Molmil
Open conformation of O. piceae sterol esterase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Gutierrez-Fernandez, J, Vaquero, M.E, Prieto, A, Barriuso, J, Gonzalez, M.J, Hermoso, J.A.
Deposit date:2013-03-06
Release date:2014-03-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of Ophiostoma Piceae Sterol Esterase: Structural Insights Into Activation Mechanism and Product Release.
J.Struct.Biol., 187, 2014
1ZL9
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BU of 1zl9 by Molmil
Crystal Structure of a major nematode C.elegans specific GST (CE01613)
Descriptor: GLUTATHIONE, glutathione S-transferase 5
Authors:Kriksunov, I.A, Liu, Q, Schuller, D.J, Campbell, A.M, Barrett, J, Brophy, P.M, Hao, Q.
Deposit date:2005-05-05
Release date:2005-05-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structure of a major nematode C.elegans specific GST (CE01613)
To be Published
3D62
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BU of 3d62 by Molmil
Development of Broad-Spectrum Halomethyl Ketone Inhibitors Against Coronavirus Main Protease 3CLpro
Descriptor: 3C-like proteinase, benzyl (2-oxopropyl)carbamate
Authors:Bacha, U, Barrila, J, Gabelli, S.B, Kiso, Y, Amzel, L.M, Freire, E.
Deposit date:2008-05-18
Release date:2008-07-01
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Development of broad-spectrum halomethyl ketone inhibitors against coronavirus main protease 3CL(pro).
Chem.Biol.Drug Des., 72, 2008
6G0Y
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BU of 6g0y by Molmil
X-ray structure of M-21 protein complex
Descriptor: Matrix M2-1, Phosphoprotein, ZINC ION
Authors:Edwards, T.A, Barr, J.
Deposit date:2018-03-20
Release date:2018-11-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:The Structure of the Human Respiratory Syncytial Virus M2-1 Protein Bound to the Interaction Domain of the Phosphoprotein P Defines the Orientation of the Complex.
Mbio, 9, 2018
8B6U
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BU of 8b6u by Molmil
Mpf2Ba1 monomer
Descriptor: MAGNESIUM ION, Mpf2Ba1
Authors:Marini, G, Poland, B, Leininger, C, Lukoyanova, N, Spielbauer, D, Barry, J, Altier, D, Lum, A, Scolaro, E, Perez-Ortega, C, Yalpani, N, Sandahl, G, Mabry, T, Klever, J, Nowatzki, T, Zhao, J.Z, Sethi, A, Kassa, A, Crane, V, Lu, A, Nelson, M.E, Eswar, N, Topf, M, Saibil, H.R.
Deposit date:2022-09-27
Release date:2023-05-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.134 Å)
Cite:Structural journey of an insecticidal protein against western corn rootworm.
Nat Commun, 14, 2023
8B6W
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BU of 8b6w by Molmil
Mpf2Ba1 pore
Descriptor: MAGNESIUM ION, Mpf2Ba1
Authors:Marini, G, Poland, B, Leininger, C, Lukoyanova, N, Spielbauer, D, Barry, J, Altier, D, Lum, A, Scolaro, E, Perez Ortega, C, Yalpani, N, Sandahl, G, Mabry, T, Klever, J, Nowatzki, T, Zhao, J.Z, Sethi, A, Kassa, A, Crane, V, Lu, A, Nelson, M.E, Eswar, N, Topf, M, Saibil, H.R.
Deposit date:2022-09-27
Release date:2023-05-31
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural journey of an insecticidal protein against western corn rootworm.
Nat Commun, 14, 2023
8B6V
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BU of 8b6v by Molmil
Mp2Ba1 pre-pore
Descriptor: MAGNESIUM ION, Mpf2Ba1
Authors:Marini, G, Poland, B, Leininger, C, Lukoyanova, N, Spielbauer, D, Barry, J, Altier, D, Lum, A, Scolaro, E, Perez Ortega, C, Yalpani, N, Sandahl, G, Mabry, T, Klever, J, Nowatzki, T, Zhao, J.Z, Sethi, A, Kassa, A, Crane, V, Lu, A, Nelson, M.E, Eswar, N, Topf, M, Saibil, H.R.
Deposit date:2022-09-27
Release date:2023-05-31
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural journey of an insecticidal protein against western corn rootworm.
Nat Commun, 14, 2023
2GFW
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BU of 2gfw by Molmil
Structure of wild type E. coli FabF (KASII)
Descriptor: 3-oxoacyl-[acyl-carrier-protein] synthase 2
Authors:Soisson, S.M, Parthasarathy, G.
Deposit date:2006-03-23
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Platensimycin is a selective FabF inhibitor with potent antibiotic properties.
Nature, 441, 2006
2GFX
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BU of 2gfx by Molmil
Structure of E. coli FabF(C163Q) in complex with Platensimycin
Descriptor: 3-oxoacyl-[acyl-carrier-protein] synthase 2, PLATENSIMYCIN
Authors:Soisson, S.M, Parthasarathy, G.
Deposit date:2006-03-23
Release date:2006-05-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Platensimycin is a selective FabF inhibitor with potent antibiotic properties.
Nature, 441, 2006

 

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