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3AA5
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BU of 3aa5 by Molmil
A52F E.coli RNase HI
Descriptor: Ribonuclease HI
Authors:Takano, K.
Deposit date:2009-11-11
Release date:2010-10-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein core adaptability: crystal structures of the cavity-filling variants of Escherichia coli RNase HI
Protein Pept.Lett., 17, 2010
3AA3
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BU of 3aa3 by Molmil
A52L E. coli RNase HI
Descriptor: Ribonuclease HI
Authors:Takano, K.
Deposit date:2009-11-11
Release date:2010-10-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein core adaptability: crystal structures of the cavity-filling variants of Escherichia coli RNase HI
Protein Pept.Lett., 17, 2010
7YUZ
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BU of 7yuz by Molmil
Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor AP8784
Descriptor: AP8784, GUANOSINE-5'-DIPHOSPHATE, IODIDE ION, ...
Authors:Irie, M, Fukami, T.A, Tanada, M, Ohta, A, Torizawa, T.
Deposit date:2022-08-18
Release date:2023-07-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.878 Å)
Cite:Validation of a New Methodology to Create Oral Drugs beyond the Rule of 5 for Intracellular Tough Targets.
J.Am.Chem.Soc., 145, 2023
7YV1
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BU of 7yv1 by Molmil
Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor LUNA18 and KA30L Fab
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, KA30L Fab H-chain, ...
Authors:Irie, M, Fukami, T.A, Matsuo, A, Saka, K, Nishimura, M, Saito, H, Torizawa, T, Tanada, M, Ohta, A.
Deposit date:2022-08-18
Release date:2023-07-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.454 Å)
Cite:Validation of a New Methodology to Create Oral Drugs beyond the Rule of 5 for Intracellular Tough Targets.
J.Am.Chem.Soc., 145, 2023
6KS2
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BU of 6ks2 by Molmil
Structure of anti-Ghrelin receptor antibody
Descriptor: Fab7881 Heavy Chain (FabH), Fab7881 Light Chain (FabL)
Authors:Shiimura, Y, Horita, S, Asada, H, Hirata, K, Iwata, S, Kojima, M.
Deposit date:2019-08-23
Release date:2020-08-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.753 Å)
Cite:Structure of an antagonist-bound ghrelin receptor reveals possible ghrelin recognition mode.
Nat Commun, 11, 2020
6KO5
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BU of 6ko5 by Molmil
Complex structure of Ghrelin receptor with Fab
Descriptor: 6-(4-bromanyl-2-fluoranyl-phenoxy)-2-methyl-3-[[(3~{S})-1-propan-2-ylpiperidin-3-yl]methyl]pyrido[3,2-d]pyrimidin-4-one, Chimera of Soluble cytochrome b562 and Growth hormone secretagogue receptor type 1, Fab7881 Heavy Chain, ...
Authors:Shiimura, Y, Horita, S, Asada, H, Hirata, K, Iwata, S, Kojima, M.
Deposit date:2019-08-08
Release date:2020-08-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of an antagonist-bound ghrelin receptor reveals possible ghrelin recognition mode.
Nat Commun, 11, 2020
6AI6
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BU of 6ai6 by Molmil
Crystal structure of SpCas9-NG
Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9/Csn1, DNA (28-MER), ...
Authors:Nishimasu, H, Hirano, S, Ishitani, R, Nureki, O.
Deposit date:2018-08-21
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Engineered CRISPR-Cas9 nuclease with expanded targeting space
Science, 361, 2018
6E7D
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BU of 6e7d by Molmil
Structure of the inhibitory NKR-P1B receptor bound to the host-encoded ligand, Clr-b
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, C-type lectin domain family 2 member D, Killer cell lectin-like receptor subfamily B member 1B allele B, ...
Authors:Balaji, G.R, Rossjohn, J, Berry, R.
Deposit date:2018-07-26
Release date:2018-10-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Recognition of host Clr-b by the inhibitory NKR-P1B receptor provides a basis for missing-self recognition.
Nat Commun, 9, 2018
3W9Z
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BU of 3w9z by Molmil
Crystal structure of DusC
Descriptor: FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase C
Authors:Chen, M, Yu, J, Tanaka, Y, Tanaka, I, Yao, M.
Deposit date:2013-04-19
Release date:2013-07-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of dihydrouridine synthase C (DusC) from Escherichia coli
Acta Crystallogr.,Sect.F, 69, 2013
5ZG3
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BU of 5zg3 by Molmil
Crystal structure of the GluA2o LBD in complex with glutamate and TAK-137
Descriptor: 9-(4-phenoxyphenyl)-3,4-dihydro-2H-2lambda~6~-pyrido[2,1-c][1,2,4]thiadiazine-2,2-dione, ACETATE ION, GLUTAMIC ACID, ...
Authors:Sogabe, S, Igaki, S, Hirokawa, A, Zama, Y, Lane, W, Snell, G.
Deposit date:2018-03-07
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:TAK-137, an AMPA-R potentiator with little agonistic effect, has a wide therapeutic window.
Neuropsychopharmacology, 44, 2019
5ZG1
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BU of 5zg1 by Molmil
Crystal structure of the GluA2o LBD in complex with glutamate and Compound-2
Descriptor: 9-(4-~{tert}-butylphenyl)-3,4-dihydropyrido[2,1-c][1,2,4]thiadiazine 2,2-dioxide, GLUTAMIC ACID, GLYCEROL, ...
Authors:Sogabe, S, Igaki, S, Hirokawa, A, Zama, Y, Lane, W, Snell, G.
Deposit date:2018-03-07
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:TAK-137, an AMPA-R potentiator with little agonistic effect, has a wide therapeutic window.
Neuropsychopharmacology, 44, 2019
5ZG2
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BU of 5zg2 by Molmil
Crystal structure of the GluA2o LBD in complex with ZK200775 and Compound-2
Descriptor: 9-(4-~{tert}-butylphenyl)-3,4-dihydropyrido[2,1-c][1,2,4]thiadiazine 2,2-dioxide, ACETATE ION, GLYCEROL, ...
Authors:Sogabe, S, Igaki, S, Hirokawa, A, Zama, Y, Lane, W, Snell, G.
Deposit date:2018-03-07
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:TAK-137, an AMPA-R potentiator with little agonistic effect, has a wide therapeutic window.
Neuropsychopharmacology, 44, 2019
5ZG0
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BU of 5zg0 by Molmil
Crystal structure of the GluA2o LBD in complex with glutamate and Compound-1
Descriptor: 9-{4-[(propan-2-yl)oxy]phenyl}-3,4-dihydro-2H-2lambda~6~-pyrido[2,1-c][1,2,4]thiadiazine-2,2-dione, ACETATE ION, GLUTAMIC ACID, ...
Authors:Sogabe, S, Igaki, S, Hirokawa, A, Zama, Y, Lane, W, Snell, G.
Deposit date:2018-03-07
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:TAK-137, an AMPA-R potentiator with little agonistic effect, has a wide therapeutic window.
Neuropsychopharmacology, 44, 2019
5TZN
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BU of 5tzn by Molmil
Structure of the viral immunoevasin m12 (Smith) bound to the natural killer cell receptor NKR-P1B (B6)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein family protein m12, ...
Authors:Berry, R, Rossjohn, J.
Deposit date:2016-11-22
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Viral Immunoevasin Controls Innate Immunity by Targeting the Prototypical Natural Killer Cell Receptor Family.
Cell, 169, 2017
3CPP
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BU of 3cpp by Molmil
CRYSTAL STRUCTURE OF THE CARBON MONOXY-SUBSTRATE-CYTOCHROME P450-CAM TERNARY COMPLEX
Descriptor: CAMPHOR, CARBON MONOXIDE, CYTOCHROME P450-CAM, ...
Authors:Raag, R, Poulos, T.L.
Deposit date:1989-07-05
Release date:1990-04-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the carbon monoxide-substrate-cytochrome P-450CAM ternary complex.
Biochemistry, 28, 1989
5ZFU
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BU of 5zfu by Molmil
Structure of the ExbB/ExbD hexameric complex (ExbB6ExbD3TM)
Descriptor: 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB
Authors:Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S.
Deposit date:2018-03-07
Release date:2018-05-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
5ZFP
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BU of 5zfp by Molmil
Structure of the ExbB/ExbD hexameric complex
Descriptor: Biopolymer transport protein ExbB
Authors:Maki-Yonekura, S, Matsuoka, R, Yonekura, K.
Deposit date:2018-03-06
Release date:2018-05-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
5ZFV
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BU of 5zfv by Molmil
Structure of the ExbB/ExbD pentameric complex (ExbB5ExbD1TM)
Descriptor: 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB
Authors:Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S.
Deposit date:2018-03-07
Release date:2018-05-09
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
1AHL
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BU of 1ahl by Molmil
ANTHOPLEURIN-A,NMR, 20 STRUCTURES
Descriptor: ANTHOPLEURIN-A
Authors:Pallaghy, P.K, Scanlon, M.J, Monks, S.A, Norton, R.S.
Deposit date:1994-10-28
Release date:1995-11-14
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Three-dimensional structure in solution of the polypeptide cardiac stimulant anthopleurin-A.
Biochemistry, 34, 1995
1VEC
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BU of 1vec by Molmil
Crystal structure of the N-terminal domain of rck/p54, a human DEAD-box protein
Descriptor: ATP-dependent RNA helicase p54, L(+)-TARTARIC ACID, ZINC ION
Authors:Hogetsu, K, Matsui, T, Yukihiro, Y, Tanaka, M, Sato, T, Kumasaka, T, Tanaka, N.
Deposit date:2004-03-29
Release date:2004-04-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural insight of human DEAD-box protein rck/p54 into its substrate recognition with conformational changes
Genes Cells, 11, 2006
1OFV
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BU of 1ofv by Molmil
FLAVODOXIN FROM ANACYSTIS NIDULANS: REFINEMENT OF TWO FORMS OF THE OXIDIZED PROTEIN
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVODOXIN
Authors:Smith, W.W, Pattridge, K.A, Luschinsky, C.L, Ludwig, M.L.
Deposit date:1992-06-22
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Refined structures of oxidized flavodoxin from Anacystis nidulans.
J.Mol.Biol., 294, 1999
7YL5
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BU of 7yl5 by Molmil
Cell surface protein YwfG protein complexed with mannose
Descriptor: CALCIUM ION, GRAM_POS_ANCHORING domain-containing protein, SULFATE ION, ...
Authors:Tsuchiya, W, Fujimoto, Z, Suzuki, C.
Deposit date:2022-07-25
Release date:2023-06-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Cell-surface protein YwfG of Lactococcus lactis binds to alpha-1,2-linked mannose.
Plos One, 18, 2023
7YL4
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BU of 7yl4 by Molmil
Cell surface protein YwfG protein (apo form)
Descriptor: CALCIUM ION, GRAM_POS_ANCHORING domain-containing protein, SULFATE ION
Authors:Tsuchiya, W, Fujimoto, Z, Suzuki, C.
Deposit date:2022-07-25
Release date:2023-06-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Cell-surface protein YwfG of Lactococcus lactis binds to alpha-1,2-linked mannose.
Plos One, 18, 2023
7YL6
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BU of 7yl6 by Molmil
Cell surface protein YwfG protein complexed with alpha-1,2-mannobiose
Descriptor: CALCIUM ION, GRAM_POS_ANCHORING domain-containing protein, SULFATE ION, ...
Authors:Tsuchiya, W, Fujimoto, Z, Suzuki, C.
Deposit date:2022-07-25
Release date:2023-06-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Cell-surface protein YwfG of Lactococcus lactis binds to alpha-1,2-linked mannose.
Plos One, 18, 2023
2YV0
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BU of 2yv0 by Molmil
Structural and Thermodynamic Analyses of E. coli ribonuclease HI Variant with Quintuple Thermostabilizing Mutations
Descriptor: Ribonuclease HI
Authors:Haruki, M, Motegi, T, Tadokoro, T, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2007-04-06
Release date:2008-03-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and thermodynamic analyses of Escherichia coli RNase HI variant with quintuple thermostabilizing mutations.
Febs J., 274, 2007

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