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3ADW
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BU of 3adw by Molmil
Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate and 15-oxo-eicosatetraenoic acid
Descriptor: (5-methoxy-1H-indol-3-yl)acetic acid, (5E,8E,11Z,13E)-15-oxoicosa-5,8,11,13-tetraenoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ADX
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BU of 3adx by Molmil
Human PPARgamma ligand-binding domain in complex with indomethacin and nitro-233
Descriptor: 3-[5-(2-nitropent-1-en-1-yl)furan-2-yl]benzoic acid, INDOMETHACIN, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Shiraki, T, Oyama, T, Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
2ZVV
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BU of 2zvv by Molmil
Crystal structure of Proliferating cellular nuclear antigen 1 and Short peptide from human P21
Descriptor: Cyclin-dependent kinase inhibitor 1, Proliferating cellular nuclear antigen 1, SULFATE ION
Authors:Strzalka, W, Oyama, T, Tori, K, Morikawa, K.
Deposit date:2008-11-21
Release date:2009-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the Arabidopsis thaliana proliferating cell nuclear antigen 1 and 2 proteins complexed with the human p21 C-terminal segment
Protein Sci., 18, 2009
2ZVW
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BU of 2zvw by Molmil
Crystal structure of Proliferating cell nuclear antigen 2 and Short peptide from human P21
Descriptor: Cyclin-dependent kinase inhibitor 1, Proliferating cell nuclear antigen 2, SULFATE ION
Authors:Strzalka, W, Oyama, T, Tori, K, Morikawa, K.
Deposit date:2008-11-21
Release date:2009-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the Arabidopsis thaliana proliferating cell nuclear antigen 1 and 2 proteins complexed with the human p21 C-terminal segment
Protein Sci., 18, 2009
6M04
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BU of 6m04 by Molmil
Structure of the human homo-hexameric LRRC8D channel at 4.36 Angstroms
Descriptor: Volume-regulated anion channel subunit LRRC8D
Authors:Nakamura, R, Kasuya, G, Yokoyama, T, Shirouzu, M, Ishitani, R, Nureki, O.
Deposit date:2020-02-20
Release date:2020-06-17
Method:ELECTRON MICROSCOPY (4.36 Å)
Cite:Cryo-EM structure of the volume-regulated anion channel LRRC8D isoform identifies features important for substrate permeation.
Commun Biol, 3, 2020
5HNZ
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BU of 5hnz by Molmil
Structural basis of backwards motion in kinesin-14: plus-end directed nKn669 in the nucleotide-free state
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Shigematsu, H, Yokoyama, T, Kikkawa, M, Shirouzu, M, Nitta, R.
Deposit date:2016-01-19
Release date:2016-08-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (5.8 Å)
Cite:Structural Basis of Backwards Motion in Kinesin-1-Kinesin-14 Chimera: Implication for Kinesin-14 Motility
Structure, 24, 2016
5HNX
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BU of 5hnx by Molmil
Structural basis of backwards motion in kinesin-14: minus-end directed nKn664 in the nucleotide-free state
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Shigematsu, H, Yokoyama, T, Kikkawa, M, Shirouzu, M, Nitta, R.
Deposit date:2016-01-19
Release date:2016-08-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structural Basis of Backwards Motion in Kinesin-1-Kinesin-14 Chimera: Implication for Kinesin-14 Motility
Structure, 24, 2016
5HNW
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BU of 5hnw by Molmil
Structural basis of backwards motion in kinesin-14: minus-end directed nKn664 in the AMPPNP state
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Shigematsu, H, Yokoyama, T, Kikkawa, M, Shirouzu, M, Nitta, R.
Deposit date:2016-01-19
Release date:2016-08-10
Last modified:2018-07-25
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structural Basis of Backwards Motion in Kinesin-1-Kinesin-14 Chimera: Implication for Kinesin-14 Motility
Structure, 24, 2016
7DPA
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BU of 7dpa by Molmil
Cryo-EM structure of the human ELMO1-DOCK5-Rac1 complex
Descriptor: Dedicator of cytokinesis protein 5, Engulfment and cell motility protein 1, Ras-related C3 botulinum toxin substrate 1
Authors:Kukimoto-Niino, M, Katsura, K, Kaushik, R, Ehara, H, Yokoyama, T, Uchikubo-Kamo, T, Mishima-Tsumagari, C, Yonemochi, M, Ikeda, M, Hanada, K, Zhang, K.Y.J, Shirouzu, M.
Deposit date:2020-12-18
Release date:2021-08-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structure of the human ELMO1-DOCK5-Rac1 complex.
Sci Adv, 7, 2021
7DT8
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BU of 7dt8 by Molmil
Crystal structure of V30M mutated transthyretin in complex with 4-chloro-9-oxo-9H-xanthene-2-carboxylic acid
Descriptor: 4-chloranyl-9-oxidanylidene-xanthene-2-carboxylic acid, CALCIUM ION, Transthyretin
Authors:Kitakami, R, Yokoyama, T, Mizuguchi, M.
Deposit date:2021-01-04
Release date:2021-10-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis.
Bioorg.Med.Chem., 44, 2021
7DT3
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BU of 7dt3 by Molmil
Crystal structure of human transthyretin in complex with 4-chloro-9,10-dioxo-9,10-dihydroanthracene-2-carboxylic acid
Descriptor: 4-chloranyl-9,10-bis(oxidanylidene)anthracene-2-carboxylic acid, CALCIUM ION, Transthyretin
Authors:Kitakami, R, Yokoyama, T, Mizuguchi, M.
Deposit date:2021-01-04
Release date:2021-10-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.198 Å)
Cite:Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis.
Bioorg.Med.Chem., 44, 2021
7DT5
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BU of 7dt5 by Molmil
Crystal structure of human transthyretin in complex with 4-chloro-9-oxo-9H-xanthene-2-carboxylic acid
Descriptor: 4-chloranyl-9-oxidanylidene-xanthene-2-carboxylic acid, CALCIUM ION, Transthyretin
Authors:Kitakami, R, Yokoyama, T, Mizuguchi, M.
Deposit date:2021-01-04
Release date:2021-10-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis.
Bioorg.Med.Chem., 44, 2021
7DT6
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BU of 7dt6 by Molmil
Crystal structure of V30M mutated transthyretin in complex with purpurin
Descriptor: Purpurin, Transthyretin
Authors:Kitakami, R, Yokoyama, T, Mizuguchi, M.
Deposit date:2021-01-04
Release date:2021-10-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis.
Bioorg.Med.Chem., 44, 2021
5TNT
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BU of 5tnt by Molmil
Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Coagulation factor IX, N-[(1S,4S,7R)-2-(3-amino-4-chloro[1,2]oxazolo[5,4-c]pyridin-7-yl)-2-azabicyclo[2.2.1]heptan-7-yl]-2-chloro-4-(3-methyl-1H-1,2,4-triazol-1-yl)benzamide, ...
Authors:Sakurada, I, Endo, T, Hikita, K, Hirabayashi, T, Hosaka, Y, Kato, Y, Maeda, Y, Matsumoto, S, Mizuno, T, Nagasue, A, Nishimura, T, Shimada, S, Shinozaki, M, Taguchi, K, Takeuchi, K, Yokoyama, T, Hruza, A, Reichert, P, Zhang, T, Wood, H.B, Nakao, K, Furusako, S.
Deposit date:2016-10-14
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
5TNO
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BU of 5tno by Molmil
Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Coagulation factor IX, SODIUM ION, ...
Authors:Sakurada, I, Endo, T, Hikita, K, Hirabayashi, T, Hosaka, Y, Kato, Y, Maeda, Y, Matsumoto, S, Mizuno, T, Nagasue, H, Nishimura, T, Shimada, S, Shinozaki, M, Taguchi, K, Takeuchi, K, Yokoyama, T, Hruza, A, Reichert, P, Zhang, T, Wood, H.B, Nakao, K, Furusako, S.
Deposit date:2016-10-14
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
8JDM
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BU of 8jdm by Molmil
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2023-05-14
Release date:2023-12-06
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
8JDL
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BU of 8jdl by Molmil
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2023-05-14
Release date:2023-12-06
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.42 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
8JDJ
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BU of 8jdj by Molmil
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2023-05-14
Release date:2023-12-06
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
8JDK
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BU of 8jdk by Molmil
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2023-05-14
Release date:2023-12-06
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.26 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
1F75
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BU of 1f75 by Molmil
CRYSTAL STRUCTURE OF UNDECAPRENYL DIPHOSPHATE SYNTHASE FROM MICROCOCCUS LUTEUS B-P 26
Descriptor: SULFATE ION, UNDECAPRENYL PYROPHOSPHATE SYNTHETASE
Authors:Fujihashi, M, Zhang, Y.-W, Higuchi, Y, Li, X.-Y, Koyama, T, Miki, K.
Deposit date:2000-06-26
Release date:2001-03-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of cis-prenyl chain elongating enzyme, undecaprenyl diphosphate synthase.
Proc.Natl.Acad.Sci.USA, 98, 2001
8IFC
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BU of 8ifc by Molmil
Arbekacin-bound E.coli 70S ribosome in the PURE system
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Tomono, J, Asano, K, Chiashi, T, Tanaka, Y, Yokoyama, T.
Deposit date:2023-02-17
Release date:2024-02-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside.
J.Biochem., 175, 2024
8JX2
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BU of 8jx2 by Molmil
alpha-Hemolysin(G122S/K147R)-SpyTag/SpyCatcher head to head 14-mer
Descriptor: alpha hemolysin fused with spy-catcher, alpha hemolysin fused with spy-tag
Authors:Ishii, Y, Naito, K, Yokoyama, T, Tanaka, Y, Matsuura, T.
Deposit date:2023-06-30
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:alpha-Hemolysin(G122S/K147R)-SpyTag/SpyCatcher head to head 14-mer
To Be Published
8JX3
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BU of 8jx3 by Molmil
alpha-Hemolysin(G122S/K147R/K237C)-SpyTag/SpyCatcher head to head 14-mer
Descriptor: alpha hemolysin fused with spy-catcher, alpha hemolysin fused with spy-tag
Authors:Ishii, Y, Naito, K, Yokoyama, T, Tanaka, Y, Matsuura, T.
Deposit date:2023-06-30
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:alpha-Hemolysin(G122S/K147R)-SpyTag/SpyCatcher head to head 14-mer
To Be Published
8IFE
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BU of 8ife by Molmil
Arbekacin-added human 80S ribosome
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Tomono, J, Asano, K, Chiashi, T, Tanaka, Y, Yokoyama, T.
Deposit date:2023-02-17
Release date:2024-02-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside.
J.Biochem., 175, 2024
8IFD
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BU of 8ifd by Molmil
Dibekacin-added human 80S ribosome
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Tomono, J, Asano, K, Chiashi, T, Tanaka, Y, Yokoyama, T.
Deposit date:2023-02-17
Release date:2024-02-14
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside.
J.Biochem., 175, 2024

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