Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1S76
DownloadVisualize
BU of 1s76 by Molmil
T7 RNA polymerase alpha beta methylene ATP elongation complex
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA (5'-D(P*GP*CP*CP*GP*TP*GP*CP*GP*CP*AP*TP*TP*CP*GP*CP*CP*GP*TP*GP*TP*T)-3'), DNA (5'-D(P*TP*TP*TP*AP*CP*GP*TP*TP*GP*CP*GP*CP*AP*CP*GP*GP*C)-3'), ...
著者Yin, Y.W, Steitz, T.A.
登録日2004-01-29
公開日2004-03-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献The structural mechanism of translocation and helicase activity in T7 RNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1S77
DownloadVisualize
BU of 1s77 by Molmil
T7 RNAP product pyrophosphate elongation complex
分子名称: DNA (5'-D(*GP*CP*CP*GP*TP*GP*CP*GP*CP*AP*TP*TP*CP*GP*CP*CP*GP*TP*GP*TP*T)-3'), DNA (5'-D(*TP*TP*TP*AP*CP*GP*TP*TP*GP*CP*GP*CP*AP*CP*GP*GP*C)-3'), DNA-directed RNA polymerase, ...
著者Yin, Y.W, Steitz, T.A.
登録日2004-01-29
公開日2004-03-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献The structural mechanism of translocation and helicase activity in T7 RNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1MSW
DownloadVisualize
BU of 1msw by Molmil
Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase
分子名称: DNA-directed RNA polymerase, Non-Template DNA, RNA message, ...
著者Yin, Y.W, Steitz, T.A.
登録日2002-09-19
公開日2002-11-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis for the Transition from Initiation to Elongation Transcription in T7 RNA Polymerase
Science, 298, 2002
4MKW
DownloadVisualize
BU of 4mkw by Molmil
Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence
分子名称: 5methylC DNA dodecamer, MAGNESIUM ION
著者Yin, Y.W.
登録日2013-09-05
公開日2013-11-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.219 Å)
主引用文献Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence.
Biochemistry, 52, 2013
8PE9
DownloadVisualize
BU of 8pe9 by Molmil
Complex between DDR1 DS-like domain and PRTH-101 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Liu, J, Chiang, H, Xiong, W, Laurent, V, Griffiths, S.C, Duelfer, J, Deng, H, Sun, X, Yin, Y.W, Li, W, Audoly, L.P, An, Z, Schuerpf, T, Li, R, Zhang, N.
登録日2023-06-13
公開日2023-06-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.152 Å)
主引用文献A highly selective humanized DDR1 mAb reverses immune exclusion by disrupting collagen fiber alignment in breast cancer.
J Immunother Cancer, 11, 2023
7R6V
DownloadVisualize
BU of 7r6v by Molmil
Human EXOG complexed with dRP-containing DNA
分子名称: DNA (5'-D(*CP*GP*CP*AP*CP*GP*TP*CP*AP*GP*AP*A)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*GP*TP*GP*CP*G)-3'), MAGNESIUM ION, ...
著者Szymanski, M.R, Yin, Y.W.
登録日2021-06-23
公開日2022-08-24
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Human EXOG possesses strong AP hydrolysis activity
To Be Published
8D37
DownloadVisualize
BU of 8d37 by Molmil
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in replication conformer
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (25-MER), ...
著者Park, J, Yin, Y.W.
登録日2022-05-31
公開日2023-05-24
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (2.65 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
8D33
DownloadVisualize
BU of 8d33 by Molmil
Human mitochondrial DNA polymerase gamma ternary complex with GC basepair
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (25-MER), ...
著者Park, J, Yin, Y.W.
登録日2022-05-31
公開日2023-05-24
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (2.46 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
8D3R
DownloadVisualize
BU of 8d3r by Molmil
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in intermediate conformer
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*TP*AP*T)-3'), ...
著者Park, J, Yin, Y.W.
登録日2022-06-01
公開日2023-05-24
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
8D42
DownloadVisualize
BU of 8d42 by Molmil
Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (composite)
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*TP*AP*T)-3'), ...
著者Park, J, Yin, Y.W.
登録日2022-06-01
公開日2023-05-24
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (2.91 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
8UDK
DownloadVisualize
BU of 8udk by Molmil
Human Mitochondrial DNA Polymerase gamma R853A Ternary Complex
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (24-MER), DNA (28-MER), ...
著者Park, J, Herrmann, G.K, Yin, Y.W.
登録日2023-09-28
公開日2024-06-05
実験手法X-RAY DIFFRACTION (3.43 Å)
主引用文献An interaction network in the polymerase active site is a prerequisite for Watson-Crick base pairing in Pol gamma.
Sci Adv, 10, 2024
8UDL
DownloadVisualize
BU of 8udl by Molmil
Human Mitochondrial DNA Polymerase Gamma Binary Complex
分子名称: DNA (5'-D(P*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*TP*AP*C)-3'), DNA (5'-D(P*AP*GP*GP*TP*AP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*T)-3'), DNA polymerase subunit gamma-1, ...
著者Park, J, Yin, Y.W.
登録日2023-09-28
公開日2024-06-05
実験手法ELECTRON MICROSCOPY (2.37 Å)
主引用文献An interaction network in the polymerase active site is a prerequisite for Watson-Crick base pairing in Pol gamma.
Sci Adv, 10, 2024
2PI4
DownloadVisualize
BU of 2pi4 by Molmil
T7RNAP complexed with a phi10 protein and initiating GTPs.
分子名称: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, 5'-D(*CP*TP*TP*CP*CP*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP*AP*TP*TP*A)-3', 5'-D(*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*T)-3', ...
著者Kennedy, W.P, Momand, J.R, Yin, Y.W.
登録日2007-04-12
公開日2007-06-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase.
J.Mol.Biol., 370, 2007
2PI5
DownloadVisualize
BU of 2pi5 by Molmil
T7 RNA polymerase complexed with a phi10 promoter
分子名称: 5'-D(*CP*TP*TP*C*CP*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP*AP*TP*TP*A)-3', 5'-D(*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*T)-3', DNA-directed RNA polymerase
著者Kennedy, W.P, Momand, J.R, Yin, Y.W.
登録日2007-04-12
公開日2007-06-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase.
J.Mol.Biol., 370, 2007
3IKL
DownloadVisualize
BU of 3ikl by Molmil
Crystal structure of Pol gB delta-I4.
分子名称: DNA polymerase subunit gamma-2, mitochondrial
著者Lee, Y.S, Kennedy, W.D, Yin, Y.W.
登録日2009-08-06
公開日2010-08-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural insight into processive human mitochondrial DNA synthesis and disease-related polymerase mutations.
Cell(Cambridge,Mass.), 139, 2009
3IKM
DownloadVisualize
BU of 3ikm by Molmil
Crystal structure of human mitochondrial DNA polymerase holoenzyme
分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2
著者Lee, Y.-S, Kennedy, W.D, Yin, Y.W.
登録日2009-08-06
公開日2009-11-03
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.24 Å)
主引用文献Structural insight into processive human mitochondrial DNA synthesis and disease-related polymerase mutations.
Cell(Cambridge,Mass.), 139, 2009
7R6T
DownloadVisualize
BU of 7r6t by Molmil
Human EXOG complexed with dRP-containing DNA
分子名称: DNA (5'-D(*CP*GP*CP*AP*CP*GP*TP*CP*AP*GP*A)-3'), DNA (5'-D(3DR)P*CP*TP*GP*AP*CP*GP*TP*GP*C)-3'), MAGNESIUM ION, ...
著者Szymanski, M.R, Yin, Y.W.
登録日2021-06-23
公開日2022-08-24
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Human EXOG possesses strong AP hydrolysis activity
To Be Published
4ZTZ
DownloadVisualize
BU of 4ztz by Molmil
Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (25-MER), DNA (5'-D(P*AP*AP*GP*AP*CP*GP*AP*GP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*GP*TP*AP*C)-3'), ...
著者Szymanski, M.R, Yin, Y.W.
登録日2015-05-15
公開日2015-09-23
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.442 Å)
主引用文献Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase
EMBO J., 34, 2015
5C53
DownloadVisualize
BU of 5c53 by Molmil
Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma
分子名称: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE, DNA (26-MER), DNA (5'-D(*AP*AP*AP*AP*CP*GP*AP*GP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*GP*TP*AP*C)-3'), ...
著者Sohl, C.D, Szymanski, M.R, Mislak, A.C, Shumate, C.K, Amiralaei, S, Schinazi, R.F, Anderson, K.S, Yin, Y.W.
登録日2015-06-19
公開日2016-01-27
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.567 Å)
主引用文献Probing the structural and molecular basis of nucleotide selectivity by human mitochondrial DNA polymerase gamma.
Proc.Natl.Acad.Sci.USA, 112, 2015
5C52
DownloadVisualize
BU of 5c52 by Molmil
Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma
分子名称: DNA (26-MER), DNA (5'-D(*AP*AP*AP*AP*CP*GP*AP*GP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*GP*TP*AP*C)-3'), DNA polymerase subunit gamma-1, ...
著者Sohl, C.D, Szymanski, M.R, Mislak, A.C, Shumate, C.K, Amiralaei, S, Schinazi, R.F, Anderson, K.S, Yin, Y.W.
登録日2015-06-19
公開日2016-05-11
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.637 Å)
主引用文献Probing the structural and molecular basis of nucleotide selectivity by human mitochondrial DNA polymerase gamma.
Proc.Natl.Acad.Sci.USA, 112, 2015
4ZTU
DownloadVisualize
BU of 4ztu by Molmil
Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase
分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (25-MER), DNA (5'-D(P*AP*AP*GP*AP*CP*GP*AP*GP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*GP*TP*AP*C)-3'), ...
著者Szymanski, M.R, Kuznestov, V.B, Shumate, C.K, Meng, Q, Lee, Y.-S, Patel, G, Patel, S.S, Yin, Y.W.
登録日2015-05-15
公開日2015-09-23
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.299 Å)
主引用文献Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase
EMBO J., 34, 2015
5T40
DownloadVisualize
BU of 5t40 by Molmil
A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme
分子名称: MAGNESIUM ION, Nuclease EXOG, mitochondrial, ...
著者Szymanski, M.R, Yin, W.Y.
登録日2016-08-27
公開日2017-05-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease.
Nat Commun, 8, 2017
5T3V
DownloadVisualize
BU of 5t3v by Molmil
A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme
分子名称: MANGANESE (II) ION, Nuclease EXOG, mitochondrial, ...
著者Szymanski, M.R, Yin, W.Y.
登録日2016-08-26
公開日2017-05-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease.
Nat Commun, 8, 2017
5T4I
DownloadVisualize
BU of 5t4i by Molmil
A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme
分子名称: DNA (5'-D(*GP*CP*AP*CP*GP*TP*CP*AP*G)-3'), DNA (5'-D(P*CP*TP*GP*AP*CP*GP*TP*GP*C)-3'), MANGANESE (II) ION, ...
著者Szymanski, M.R, Yin, W.Y.
登録日2016-08-29
公開日2017-05-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.389 Å)
主引用文献A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease.
Nat Commun, 8, 2017
5T5C
DownloadVisualize
BU of 5t5c by Molmil
A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme
分子名称: DNA (5'-D(P*CP*TP*GP*AP*CP*GP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*CP*GP*TP*CP*AP*G)-3'), MAGNESIUM ION, ...
著者Szymanski, M.R, Yin, W.Y.
登録日2016-08-30
公開日2017-05-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.851 Å)
主引用文献A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease.
Nat Commun, 8, 2017

 

12>

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon