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8TK0
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Structure of Gabija AB complex
分子名称: Endonuclease GajA
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2023-07-24
公開日2024-04-24
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.23 Å)
主引用文献Molecular basis of Gabija anti-phage supramolecular assemblies.
Nat.Struct.Mol.Biol., 2024
8TJY
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Structure of Gabija AB complex
分子名称: Endonuclease GajA, Gabija protein GajB
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2023-07-24
公開日2024-04-24
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (2.79 Å)
主引用文献Molecular basis of Gabija anti-phage supramolecular assemblies.
Nat.Struct.Mol.Biol., 2024
8TK1
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Structure of Gabija AB complex 1
分子名称: Endonuclease GajA, Gabija protein GajB
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2023-07-25
公開日2024-04-24
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (2.98 Å)
主引用文献Molecular basis of Gabija anti-phage supramolecular assemblies.
Nat.Struct.Mol.Biol., 2024
5GJB
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Zika virus NS3 helicase in complex with ssRNA
分子名称: NS3 helicase, RNA (5'-R(*AP*GP*AP*UP*CP*AP*A)-3')
著者Tian, H.L, Ji, X.Y, Yang, X.Y, Zhang, Z.X, Lu, Z.K, Yang, K.L, Chen, C, Zhao, Q, Chi, H, Mu, Z.Y, Xie, W, Wang, Z.F, Lou, H.Q, Yang, H.T, Rao, Z.H.
登録日2016-06-28
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.702 Å)
主引用文献Structural basis of Zika virus helicase in recognizing its substrates
Protein Cell, 7, 2016
5GJC
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Zika virus NS3 helicase in complex with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, NS3 helicase
著者Tian, H.L, Ji, X.Y, Yang, X.Y, Zhang, Z.X, Lu, Z.K, Yang, K.L, Chen, C, Zhao, Q, Chi, H, Mu, Z.Y, Xie, W, Wang, Z.F, Lou, H.Q, Yang, H.T, Rao, Z.H.
登録日2016-06-28
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Structural basis of Zika virus helicase in recognizing its substrates
Protein Cell, 7, 2016
8FEX
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Inactivate state of Maribacter polysiphoniae Argonuate (short pAgo system)
分子名称: TIR-APAZ, short pAgo
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2022-12-06
公開日2023-08-23
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8SP3
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BU of 8sp3 by Molmil
Asymmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid
分子名称: MAGNESIUM ION, TIR-APAZ, guide RNA, ...
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2023-05-01
公開日2023-08-23
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.52 Å)
主引用文献Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8SPO
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Tetramerized activation of MapSPARTA bound with NAD+
分子名称: MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Piwi domain-containing protein, ...
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2023-05-03
公開日2023-08-23
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (2.98 Å)
主引用文献Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8SP0
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Symmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid
分子名称: MAGNESIUM ION, TIR-APAZ, guide RNA, ...
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2023-05-01
公開日2023-08-23
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.33 Å)
主引用文献Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8SQU
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BU of 8squ by Molmil
Monomeric MapSPARTA bound with guide RNA and target DNA hybrid
分子名称: MAGNESIUM ION, TIR-APAZ, guide RNA, ...
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2023-05-04
公開日2023-08-23
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.28 Å)
主引用文献Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8SUX
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BU of 8sux by Molmil
Structure of E. coli PtuA hexamer
分子名称: ADENOSINE-5'-TRIPHOSPHATE, PtuA
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2023-05-13
公開日2024-01-10
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense.
Nat.Struct.Mol.Biol., 31, 2024
8FFI
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BU of 8ffi by Molmil
Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding
分子名称: MAGNESIUM ION, TIR-APAZ, guide RNA, ...
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2022-12-08
公開日2023-08-23
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
5Z8H
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BU of 5z8h by Molmil
APC with an inhibitor
分子名称: Adenomatous polyposis coli protein, GLYCEROL, Peptide inhibitor
著者Zhang, J, Yang, X.Y, Song, K.
登録日2018-01-31
公開日2019-02-06
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献APC with an inhibitor
To Be Published
5XBN
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BU of 5xbn by Molmil
crystal structure of Wss1 from saccharomyces cerevisiae
分子名称: Wss1p, ZINC ION
著者Dong, Y.H, Yang, X.Y, Wang, W.J.
登録日2017-03-20
公開日2018-03-28
実験手法X-RAY DIFFRACTION (1.761 Å)
主引用文献crystal structure of Wss1 from saccharomyces cerevisiae
To Be Published
5XBV
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BU of 5xbv by Molmil
Crystal structure of Wss1 mutant from saccharomyces cerevisiae
分子名称: Wss1p, ZINC ION
著者Dong, Y.H, Yang, X.Y, Wang, W.J.
登録日2017-03-21
公開日2018-03-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.804 Å)
主引用文献crystal structure of Wss1 mutant from saccharomyces cerevisiae
To Be Published
7YW5
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BU of 7yw5 by Molmil
Crystal Structure of the ITS1 processing by human ribonuclease ISG20L2 with mutation D327A
分子名称: Interferon-stimulated 20 kDa exonuclease-like 2
著者Yang, X.Y, Liu, X.H.
登録日2022-08-21
公開日2024-01-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.77 Å)
主引用文献Molecular mechanism of human ISG20L2 for the ITS1 cleavage in the processing of 18S precursor ribosomal RNA.
Nucleic Acids Res., 52, 2024
7YW3
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BU of 7yw3 by Molmil
Crystal structure of tRNA 2'-phosphotransferase from Homo sapiens
分子名称: 1,2-ETHANEDIOL, [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate, tRNA 2'-phosphotransferase 1
著者Yang, X.Y, Liu, X.H.
登録日2022-08-21
公開日2023-07-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and biochemical insights into the molecular mechanism of TRPT1 for nucleic acid ADP-ribosylation.
Nucleic Acids Res., 51, 2023
7YW4
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BU of 7yw4 by Molmil
Crystal structure of tRNA 2'-phosphotransferase from Saccharomyces cerevisiae
分子名称: D(-)-TARTARIC ACID, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, tRNA 2'-phosphotransferase
著者Yang, X.Y, Liu, X.H.
登録日2022-08-21
公開日2023-07-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Structural and biochemical insights into the molecular mechanism of TRPT1 for nucleic acid ADP-ribosylation.
Nucleic Acids Res., 51, 2023
7YW2
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BU of 7yw2 by Molmil
Crystal structure of tRNA 2'-phosphotransferase from Mus musculus
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, GLYCINE, ...
著者Yang, X.Y, Liu, X.H.
登録日2022-08-21
公開日2023-07-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Structural and biochemical insights into the molecular mechanism of TRPT1 for nucleic acid ADP-ribosylation.
Nucleic Acids Res., 51, 2023
4Y21
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BU of 4y21 by Molmil
Crystal Structure of Munc13-1 MUN domain
分子名称: Protein unc-13 homolog A
著者Yang, X.Y, Wang, S, Sheng, Y, Zhang, M, Zou, W.J, Wu, L.J, Kang, L.J, Rizo, J, Zhang, R.G, Xu, T, Ma, C.
登録日2015-02-09
公開日2015-06-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Syntaxin opening by the MUN domain underlies the function of Munc13 in synaptic-vesicle priming.
Nat.Struct.Mol.Biol., 22, 2015
5Y6N
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BU of 5y6n by Molmil
Zika virus helicase in complex with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Helicase domain from Genome polyprotein, MANGANESE (II) ION
著者Yang, X.Y, Chen, C, Tian, H.L, Chi, H, Mu, Z.Y, Zhang, T.Q, Yang, K.L, Zhao, Q, Liu, X.H, Wang, Z.F, Ji, X.Y, Yang, H.T.
登録日2017-08-12
公開日2018-07-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.571 Å)
主引用文献Mechanism of ATP hydrolysis by the Zika virus helicase.
FASEB J., 32, 2018
5Y6M
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BU of 5y6m by Molmil
Zika virus helicase in complex with ADP-AlF3
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Helicase domain from Genome polyprotein, ...
著者Yang, X.Y, Chen, C, Tian, H.L, Chi, H, Mu, Z.Y, Zhang, T.Q, Yang, K.L, Zhao, Q, Liu, X.H, Wang, Z.F, Ji, X.Y, Yang, H.T.
登録日2017-08-12
公開日2018-07-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.002 Å)
主引用文献Mechanism of ATP hydrolysis by the Zika virus helicase.
FASEB J., 32, 2018
5JKP
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BU of 5jkp by Molmil
Crystal structure of immunity protein Pa5087 from Pseudomonas aeruginosa
分子名称: Uncharacterized protein
著者Li, Z.Q, Gao, Z.Q, She, Z, Dong, Y.H.
登録日2016-04-26
公開日2016-08-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.106 Å)
主引用文献Structural analysis of Pseudomonas aeruginosa H3-T6SS immunity proteins
Febs Lett., 590, 2016
5JJO
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The crystal structure of immunity protein PA5088 from Pseudomonas aeruginosa
分子名称: GOLD ION, Uncharacterized protein
著者Li, Z.Q, Gao, Z.Q, She, Z, Dong, Y.H.
登録日2016-04-24
公開日2016-08-31
実験手法X-RAY DIFFRACTION (2.002 Å)
主引用文献Structural analysis of Pseudomonas aeruginosa H3-T6SS immunity proteins
Febs Lett., 590, 2016
8J69
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BU of 8j69 by Molmil
Crystal structure of HORMA domain-containing protein 1 (HORMAD1) from Homo sapiens
分子名称: HORMA domain-containing protein 1
著者Yang, X.Y, Liu, X.H.
登録日2023-04-25
公開日2023-09-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.67 Å)
主引用文献Structural and biochemical insights into the interaction mechanism underlying HORMAD1 and its partner proteins.
Structure, 31, 2023

 

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