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1N3G
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Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia coli
分子名称: Protein yfiA
著者Rak, A, Kalinin, A, Shcherbakov, D, Bayer, P.
登録日2002-10-28
公開日2003-01-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia col
Biochem.Biophys.Res.Commun., 299, 2002
1UKV
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BU of 1ukv by Molmil
Structure of RabGDP-dissociation inhibitor in complex with prenylated YPT1 GTPase
分子名称: GERAN-8-YL GERAN, GTP-binding protein YPT1, GUANOSINE-5'-DIPHOSPHATE, ...
著者Rak, A, Pylypenko, O, Durek, T, Watzke, A, Kushnir, S, Brunsveld, L, Waldmann, H, Goody, R.S, Alexandrov, K.
登録日2003-09-01
公開日2004-09-01
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure of Rab GDP-dissociation inhibitor in complex with prenylated YPT1 GTPase
Science, 302, 2003
1VG9
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BU of 1vg9 by Molmil
The crystal structures of the REP-1 protein in complex with C-terminally truncated Rab7 protein
分子名称: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Rak, A, Pylypenko, O, Niculae, A, Pyatkov, K, Goody, R.S, Alexandrov, K.
登録日2004-04-23
公開日2004-07-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
Cell(Cambridge,Mass.), 117, 2004
1VG8
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BU of 1vg8 by Molmil
GPPNHP-Bound Rab7
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein Rab-7
著者Rak, A, Pylypenko, O, Niculae, A, Pyatkov, K, Goody, R.S, Alexandrov, K.
登録日2004-04-23
公開日2004-07-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
Cell(Cambridge,Mass.), 117, 2004
1VG1
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GDP-Bound Rab7
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related protein Rab-7
著者Rak, A, Pylypenko, O, Niculae, A, Pyatkov, K, Goody, R.S, Alexandrov, K.
登録日2004-04-22
公開日2004-07-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
Cell(Cambridge,Mass.), 117, 2004
1VG0
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BU of 1vg0 by Molmil
The crystal structures of the REP-1 protein in complex with monoprenylated Rab7 protein
分子名称: CHLORIDE ION, GERAN-8-YL GERAN, GUANOSINE-5'-DIPHOSPHATE, ...
著者Rak, A, Pylypenko, O, Niculae, A, Pyatkov, K, Goody, R.S, Alexandrov, K.
登録日2004-04-22
公開日2004-07-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
Cell(Cambridge,Mass.), 117, 2004
1FKM
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BU of 1fkm by Molmil
CRYSTAL STRUCTURE OF THE YPT/RAB-GAP DOMAIN OF GYP1P
分子名称: PROTEIN (GYP1P)
著者Rak, A, Fedorov, R, Alexandrov, K, Albert, S, Goody, R.S, Gallwitz, D, Scheidig, A.J.
登録日2000-08-09
公開日2001-02-09
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the GAP domain of Gyp1p: first insights into interaction with Ypt/Rab proteins.
EMBO J., 19, 2000
1CTN
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BU of 1ctn by Molmil
CRYSTAL STRUCTURE OF A BACTERIAL CHITINASE AT 2.3 ANGSTROMS RESOLUTION
分子名称: CHITINASE A
著者Perrakis, A, Tews, I, Dauter, Z, Wilson, K.S, Vorgias, C.E.
登録日1994-10-10
公開日1995-02-07
最終更新日2019-08-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of a bacterial chitinase at 2.3 A resolution.
Structure, 2, 1994
4MB7
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BU of 4mb7 by Molmil
Crystal Structure of a viral DNA glycosylase
分子名称: Endonuclease 8-like L720, SULFATE ION, ZINC ION
著者Prakash, A, Eckenroth, B.E, Doublie, S.
登録日2013-08-19
公開日2013-10-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural investigation of a viral ortholog of human NEIL2/3 DNA glycosylases.
Dna Repair, 12, 2013
4NRV
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BU of 4nrv by Molmil
Crystal Structure of non-edited human NEIL1
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Endonuclease 8-like 1
著者Prakash, A, Doublie, S.
登録日2013-11-27
公開日2014-01-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.601 Å)
主引用文献Genome and cancer single nucleotide polymorphisms of the human NEIL1 DNA glycosylase: Activity, structure, and the effect of editing.
Dna Repair, 14, 2014
4NRW
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BU of 4nrw by Molmil
MvNei1-G86D
分子名称: 5'-D(*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*C)-3', 5'-D(*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3', formamidopyrimidine-DNA glycosylase
著者Prakash, A, Doublie, S.
登録日2013-11-27
公開日2014-01-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.845 Å)
主引用文献Genome and cancer single nucleotide polymorphisms of the human NEIL1 DNA glycosylase: Activity, structure, and the effect of editing.
Dna Repair, 14, 2014
3A8Y
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BU of 3a8y by Molmil
Crystal structure of the complex between the BAG5 BD5 and Hsp70 NBD
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BAG family molecular chaperone regulator 5, Heat shock 70 kDa protein 1
著者Arakawa, A, Handa, N, Ohsawa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-10-13
公開日2010-03-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange
Structure, 18, 2010
3AY9
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BU of 3ay9 by Molmil
Crystal structure of human Hsp70 NBD in the ADP-, Mg ion-, and K ion-bound state
分子名称: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ...
著者Arakawa, A, Handa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-05-03
公開日2011-12-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Biochemical and structural studies on the high affinity of Hsp70 for ADP.
Protein Sci., 20, 2011
3ATV
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BU of 3atv by Molmil
Crystal structure of human Hsp70 NBD in the ADP-bound and Mg ion-free state
分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, Heat shock 70 kDa protein 1A/1B, ...
著者Arakawa, A, Handa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-01-13
公開日2011-12-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Biochemical and structural studies on the high affinity of Hsp70 for ADP.
Protein Sci., 20, 2011
3ATU
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BU of 3atu by Molmil
Crystal structure of human Hsp70 NBD in the ADP- and Mg ion-bound state
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, ADENOSINE-5'-DIPHOSPHATE, Heat shock 70 kDa protein 1A/1B, ...
著者Arakawa, A, Handa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-01-13
公開日2011-12-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Biochemical and structural studies on the high affinity of Hsp70 for ADP.
Protein Sci., 20, 2011
8BW0
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BU of 8bw0 by Molmil
Structure of CEACAM5 A3-B3 domain in Complex with Tusamitamab Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Carcinoembryonic antigen-related cell adhesion molecule 5, ...
著者Kumar, A, Bertrand, T, Rapisarda, C, Rak, A.
登録日2022-12-06
公開日2024-01-24
実験手法ELECTRON MICROSCOPY (3.11 Å)
主引用文献Structural insights into epitope-paratope interactions of monoclonal antibody targeting CEACAM5-expressing tumors
Res Sq, 2023
8ARF
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BU of 8arf by Molmil
Crystal structure of the N-terminal parallel dimeric coiled-coil region of the human kinetochore associated protein Spindly
分子名称: Protein Spindly
著者Perrakis, A, Ahmad, M.U.
登録日2022-08-16
公開日2022-09-07
最終更新日2022-09-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Conformational transitions of the Spindly adaptor underlie its interaction with Dynein and Dynactin.
J.Cell Biol., 221, 2022
6QCG
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BU of 6qcg by Molmil
PCNA complex with Cdt1 N-terminal PIP-box peptide
分子名称: DNA replication factor Cdt1, Proliferating cell nuclear antigen
著者Perrakis, A, von Castelmur, E.
登録日2018-12-28
公開日2019-01-23
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Direct binding of Cdt2 to PCNA is important for targeting the CRL4Cdt2E3 ligase activity to Cdt1.
Life Sci Alliance, 1, 2018
7BFZ
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BU of 7bfz by Molmil
X-ray structure of human prostate-specific membrane antigen(PSMA) in complex with a inhibitor Glu-490
分子名称: (((S)-1-carboxy-5-((E)-2-cyano-3-(5-(1-(3-methoxy-3-oxopropyl)-1,2,3,4-tetrahydroquinolin-6-yl)thiophen-2-yl)acrylamido)pentyl)carbamoyl)-L-glutamic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Rakhimbekova, A, Motlova, L, Barinka, C.
登録日2021-01-05
公開日2021-08-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献A prostate-specific membrane antigen activated molecular rotor for real-time fluorescence imaging.
Nat Commun, 12, 2021
8Q5N
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BU of 8q5n by Molmil
Apo form of restriction endonuclease NhoI.
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Restriction endonuclease (NhoI)
著者Rafalski, D, Krakowska, A, Bochtler, M.
登録日2023-08-09
公開日2024-07-17
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural analysis of the BisI family of modification dependent restriction endonucleases.
To Be Published
2MPH
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BU of 2mph by Molmil
Solution Structure of human FK506 binding Protein 25
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP3
著者Shin, J, Prakash, A, Yoon, H.
登録日2014-05-18
公開日2015-05-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis of nucleic acid recognition by FK506-binding protein 25 (FKBP25), a nuclear immunophilin.
Nucleic Acids Res., 44, 2016
5D75
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BU of 5d75 by Molmil
Crystal structure of Human FKBD25 in complex with FK506
分子名称: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500), Peptidyl-prolyl cis-trans isomerase FKBP3
著者Rajan, S, Prakash, A, Yoon, H.S.
登録日2015-08-13
公開日2016-04-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Crystal structure of the FK506 binding domain of human FKBP25 in complex with FK506.
Protein Sci., 25, 2016
3ZLS
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BU of 3zls by Molmil
Crystal structure of MEK1 in complex with fragment 6
分子名称: 1H-PYRROLO[2,3-B]PYRIDINE-3-CARBOXYLIC ACID, DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1, SODIUM ION
著者Amaning, K, Lowinsky, M, Vallee, F, Steier, V, Marcireau, C, Ugolini, A, Delorme, C, McCort, G, Andouche, C, Vougier, S, Llopart, S, Halland, N, Rak, A.
登録日2013-02-04
公開日2013-05-22
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Use of Virtual Screening and Differential Scanning Fluorimetry for the Rapid Identification of Fragments Active Against Mek1.
Bioorg.Med.Chem.Lett., 23, 2013
3ZM4
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BU of 3zm4 by Molmil
Crystal structure of MEK1 in complex with fragment 1
分子名称: 7-chloranyl-6-[(3S)-pyrrolidin-3-yl]oxy-2H-isoquinolin-1-one, DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1
著者Amaning, K, Lowinsky, M, Vallee, F, Steier, V, Marcireau, C, Ugolini, A, Delorme, C, McCort, G, Andouche, C, Vougier, S, Llopart, S, Halland, N, Rak, A.
登録日2013-02-05
公開日2013-05-22
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献The Use of Virtual Screening and Differential Scanning Fluorimetry for the Rapid Identification of Fragments Active Against Mek1.
Bioorg.Med.Chem.Lett., 23, 2013
3ZLY
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Crystal structure of MEK1 in complex with fragment 8
分子名称: 3-AMINO-1H-INDAZOLE-4-CARBONITRILE, DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1, SODIUM ION
著者Amaning, K, Lowinsky, M, Vallee, F, Steier, V, Marcireau, C, Ugolini, A, Delorme, C, McCort, G, Andouche, C, Vougier, S, Llopart, S, Halland, N, Rak, A.
登録日2013-02-04
公開日2013-05-22
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献The Use of Virtual Screening and Differential Scanning Fluorimetry for the Rapid Identification of Fragments Active Against Mek1.
Bioorg.Med.Chem.Lett., 23, 2013

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