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8XZ2
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BU of 8xz2 by Molmil
The structural model of a homodimeric D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria
分子名称: D-alanyl-D-alanine dipeptidase
著者Konuma, T, Takai, T, Tsuchiya, C, Nishida, M, Hashiba, M, Yamada, Y, Shirai, H, Motoda, Y, Nagadoi, A, Chikaishi, E, Akagi, K, Akashi, S, Yamazaki, T, Akutsu, H, Oe, A, Ikegami, T.
登録日2024-01-20
公開日2024-05-22
実験手法SOLUTION NMR
主引用文献Analysis of the homodimeric structure of a D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria.
Protein Sci., 33, 2024
6BNH
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BU of 6bnh by Molmil
Solution NMR structures of BRD4 ET domain with JMJD6 peptide
分子名称: Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6, Bromodomain-containing protein 4
著者Konuma, T, Yu, D, Zhao, C, Ju, Y, Sharma, R, Ren, C, Zhang, Q, Zhou, M.-M, Zeng, L.
登録日2017-11-16
公開日2017-12-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural Mechanism of the Oxygenase JMJD6 Recognition by the Extraterminal (ET) Domain of BRD4.
Sci Rep, 7, 2017
8I60
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BU of 8i60 by Molmil
Crystal structure of GAS41 YEATS domain in complex with histone H3K27cr
分子名称: ALA-ARG-KCR-SER-ALA-PRO, GLYCEROL, SULFATE ION, ...
著者Konuma, T, Zhou, M.-M.
登録日2023-01-26
公開日2023-07-26
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Histone H3 lysine 27 crotonylation mediates gene transcriptional repression in chromatin.
Mol.Cell, 83, 2023
8XE7
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BU of 8xe7 by Molmil
Crystal structure of human Sirt2 without Sirt2-specific insertion
分子名称: NAD-dependent protein deacetylase sirtuin-2, ZINC ION
著者Konuma, T, Akashi, S.
登録日2023-12-11
公開日2024-05-22
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Biophysical insights into the dimer formation of human Sirtuin 2.
Protein Sci., 33, 2024
7XGA
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BU of 7xga by Molmil
NMR strucutre of chimeric protein for model of PHD-Stella complex
分子名称: Chimera of E3 ubiquitin-protein ligase UHRF1 and Developmental pluripotency-associated protein 3, ZINC ION
著者Kobayashi, N, Konuma, T, Arita, K.
登録日2022-04-04
公開日2022-12-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for the unique multifaceted interaction of DPPA3 with the UHRF1 PHD finger.
Nucleic Acids Res., 50, 2022
3KZA
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BU of 3kza by Molmil
Crystal structure of Gyuba, a patched chimera of b-lactglobulin
分子名称: Beta-lactoglobulin
著者Tsuge, H, Ohtomo, H, Utsunomiya, H, Konuma, T, Ikeguchi, M.
登録日2009-12-08
公開日2010-12-22
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and stability of Gyuba, a patched chimera of b-lactoglobulin
Protein Sci., 20, 2011
6HUM
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BU of 6hum by Molmil
Structure of the photosynthetic complex I from Thermosynechococcus elongatus
分子名称: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, IRON/SULFUR CLUSTER, ...
著者Schuller, J.M, Schuller, S.K, Kurisu, G, Engel, B.D, Nowaczyk, M.M.
登録日2018-10-09
公開日2019-01-09
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.34 Å)
主引用文献Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer.
Science, 363, 2019
5U5S
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BU of 5u5s by Molmil
Solution structures of Brd2 second bromodomain in complex with stat3 peptide
分子名称: Bromodomain-containing protein 2, Stat3 peptide
著者Zeng, L, Zhou, M.-M.
登録日2016-12-07
公開日2017-03-22
最終更新日2023-11-15
実験手法SOLUTION NMR
主引用文献Distinct Roles of Brd2 and Brd4 in Potentiating the Transcriptional Program for Th17 Cell Differentiation.
Mol. Cell, 65, 2017
8IIZ
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BU of 8iiz by Molmil
Crystal structure of MBP fused GAS41 YEATS domain in complex with H3K27ac peptide
分子名称: GLYCEROL, Histone H3.1, Maltodextrin-binding protein,YEATS domain-containing protein 4, ...
著者Kikuchi, M, Umehara, T.
登録日2023-02-24
公開日2023-11-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain.
Proc.Natl.Acad.Sci.USA, 120, 2023
8IIY
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BU of 8iiy by Molmil
Crystal structure of MBP fused GAS41 YEATS domain in complex with H3K14ac peptide
分子名称: GLYCEROL, Histone H3.1, Maltodextrin-binding protein,YEATS domain-containing protein 4, ...
著者Kikuchi, M, Umehara, T.
登録日2023-02-24
公開日2023-11-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain.
Proc.Natl.Acad.Sci.USA, 120, 2023
8IJ0
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BU of 8ij0 by Molmil
Crystal structure of GAS41 YEATS domain in complex with H3K9ac peptide
分子名称: GLYCEROL, Histone H3.1, PENTAETHYLENE GLYCOL, ...
著者Kikuchi, M, Umehara, T.
登録日2023-02-24
公開日2023-11-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain.
Proc.Natl.Acad.Sci.USA, 120, 2023
6A7K
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BU of 6a7k by Molmil
X-ray structure of NdhS from T. elongatus
分子名称: ACETIC ACID, Tlr0636 protein
著者Umeno, K, Misumi, Y, Tanaka, H, Kurisu, G.
登録日2018-07-03
公開日2019-01-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer.
Science, 363, 2019
6LF1
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BU of 6lf1 by Molmil
SeviL, a GM1b/asialo-GM1 binding lectin
分子名称: CHLORIDE ION, SeviL
著者Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
登録日2019-11-28
公開日2020-12-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
6LF2
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BU of 6lf2 by Molmil
SeviL bound to asialo-GM1 saccharide
分子名称: SeviL, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
登録日2019-11-28
公開日2020-12-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
7EIF
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BU of 7eif by Molmil
Crystal structure of GAS41 YEATS domain
分子名称: GLYCEROL, YEATS domain-containing protein 4
著者Kikuchi, M, Umehara, T.
登録日2021-03-30
公開日2022-04-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain.
Proc.Natl.Acad.Sci.USA, 120, 2023
5Z9C
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BU of 5z9c by Molmil
Solution NMR structures of BRD4 first bromodomain with small compound MMQO
分子名称: 8-methoxy-6-methylquinolin-4(1H)-one, Bromodomain-containing protein 4
著者Zeng, L, Zhou, M.-M.
登録日2018-02-02
公開日2018-02-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A New Quinoline BRD4 Inhibitor Targets a Distinct Latent HIV-1 Reservoir for Reactivation from Other "Shock" Drugs.
J. Virol., 92, 2018
7CKA
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BU of 7cka by Molmil
The structure of Glycine max (Soybean) Heme oxygenase 1
分子名称: CITRIC ACID, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
著者Tohda, R, Tanaka, H, Kurisu, G.
登録日2020-07-16
公開日2020-12-30
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献Crystal structure of higher plant heme oxygenase-1 and its mechanism of interaction with ferredoxin.
J.Biol.Chem., 296, 2020
2MGW
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BU of 2mgw by Molmil
Solution Structure of the UBA Domain of Human NBR1
分子名称: Next to BRCA1 gene 1 protein
著者Walinda, E, Morimoto, D, Sugase, K, Komatsu, M, Tochio, H, Shirakawa, M.
登録日2013-11-09
公開日2014-04-09
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin.
J.Biol.Chem., 289, 2014
2MJ5
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BU of 2mj5 by Molmil
Structure of the UBA Domain of Human NBR1 in Complex with Ubiquitin
分子名称: Next to BRCA1 gene 1 protein, Polyubiquitin-C
著者Walinda, E, Morimoto, D, Sugase, K, Komatsu, M, Tochio, H, Shirakawa, M.
登録日2013-12-25
公開日2014-04-09
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin.
J.Biol.Chem., 289, 2014
2NDF
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BU of 2ndf by Molmil
Solution NMR structures of AF9 yeats domain in complex with histon H3 acetylation at K18
分子名称: Histone H3 peptide, Protein AF-9
著者Zeng, L, Zhou, M.
登録日2016-05-19
公開日2016-09-07
最終更新日2023-11-15
実験手法SOLUTION NMR
主引用文献Structural Insights into Histone Crotonyl-Lysine Recognition by the AF9 YEATS Domain.
Structure, 24, 2016
2NDG
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BU of 2ndg by Molmil
Solution NMR structures of AF9 yeats domain in complex with histone H3 crotonylation at K18
分子名称: Histone H3 peptide, Protein AF-9
著者Zeng, L, Zhou, M.
登録日2016-05-19
公開日2016-09-07
最終更新日2023-11-15
実験手法SOLUTION NMR
主引用文献Structural Insights into Histone Crotonyl-Lysine Recognition by the AF9 YEATS Domain.
Structure, 24, 2016
2ND0
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BU of 2nd0 by Molmil
Solution NMR structures of BRD4 ET domain with LANA peptide
分子名称: Bromodomain-containing protein 4, LANA
著者Zeng, L, Zhou, M.
登録日2016-04-18
公開日2016-06-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4.
Structure, 24, 2016
2NCZ
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BU of 2ncz by Molmil
Solution NMR structures of BRD4 ET domain in complex with NSD3_1 peptide
分子名称: Bromodomain-containing protein 4, Histone-lysine N-methyltransferase NSD3
著者Zeng, L, Zhou, M.
登録日2016-04-18
公開日2016-06-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4.
Structure, 24, 2016
2ND1
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BU of 2nd1 by Molmil
Solution NMR structures of BRD4 ET domain in complex with NSD3_3 peptide
分子名称: Bromodomain-containing protein 4, Histone-lysine N-methyltransferase NSD3
著者Zeng, L, Zhou, M.
登録日2016-04-19
公開日2016-06-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4.
Structure, 24, 2016

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