5EPD
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![BU of 5epd by Molmil](/molmil-images/mine/5epd) | Crystal structure of Glycerol Trinitrate Reductase XdpB from Agrobacterium sp. R89-1 (Apo form) | 分子名称: | Glycerol trinitrate reductase | 著者 | Kolenko, P, Zahradnik, J, Zuskova, I, Cerny, J, Palyzova, A, Kyslikova, E, Schneider, B. | 登録日 | 2015-11-11 | 公開日 | 2016-11-23 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form. PLoS ONE, 13, 2018
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5EH1
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![BU of 5eh1 by Molmil](/molmil-images/mine/5eh1) | Crystal structure of the extracellular part of receptor 2 of human interferon gamma | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CYSTEINE, GLYCEROL, ... | 著者 | Kolenko, P, Mikulecky, P, Zahradnik, J, Dohnalek, J, Koval, T, Cerny, J, Necasova, I, Schneider, B. | 登録日 | 2015-10-27 | 公開日 | 2016-08-17 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structure of human interferon-gamma receptor 2 reveals the structural basis for receptor specificity. Acta Crystallogr D Struct Biol, 72, 2016
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4OC0
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![BU of 4oc0 by Molmil](/molmil-images/mine/4oc0) | X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CCIBzL, a urea-based inhibitor N~2~-[(1-carboxycyclopropyl)carbamoyl]-N~6~-(4-iodobenzoyl)-L-lysine | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | 著者 | Pavlicek, J, Ptacek, J, Cerny, J, Byun, Y, Skultetyova, L, Pomper, M, Lubkowski, J, Barinka, C. | 登録日 | 2014-01-08 | 公開日 | 2014-05-21 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Structural characterization of P1'-diversified urea-based inhibitors of glutamate carboxypeptidase II. Bioorg.Med.Chem.Lett., 24, 2014
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4OC3
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![BU of 4oc3 by Molmil](/molmil-images/mine/4oc3) | X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CFIBzL, a urea-based inhibitor N~2~-{[(1S)-1-carboxy-2-(furan-2-yl)ethyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Pavlicek, J, Ptacek, J, Cerny, J, Byun, Y, Skultetyova, L, Pomper, M, Lubkowski, J, Barinka, C. | 登録日 | 2014-01-08 | 公開日 | 2014-05-21 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.79 Å) | 主引用文献 | Structural characterization of P1'-diversified urea-based inhibitors of glutamate carboxypeptidase II. Bioorg.Med.Chem.Lett., 24, 2014
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4OC2
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![BU of 4oc2 by Molmil](/molmil-images/mine/4oc2) | X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CEIBzL, a urea-based inhibitor N~2~-{[(1S)-1-carboxybut-3-yn-1-yl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Pavlicek, J, Ptacek, J, Cerny, J, Byun, Y, Skultetyova, L, Pomper, M, Lubkowski, J, Barinka, C. | 登録日 | 2014-01-08 | 公開日 | 2014-05-21 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Structural characterization of P1'-diversified urea-based inhibitors of glutamate carboxypeptidase II. Bioorg.Med.Chem.Lett., 24, 2014
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4OC1
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![BU of 4oc1 by Molmil](/molmil-images/mine/4oc1) | X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with COIBzL, a urea-based inhibitor (2S)-2-[({(1S)-1-carboxy-2-[(2S)-oxiran-2-yl]ethyl}carbamoyl)amino]-6-[(4-iodobenzoyl)amino]hexanoic acid | 分子名称: | (2S)-2-[({(1S)-1-carboxy-2-[(2S)-oxiran-2-yl]ethyl}carbamoyl)amino]-6-[(4-iodobenzoyl)amino]hexanoic acid (non-preferred name), 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Pavlicek, J, Ptacek, J, Cerny, J, Byun, Y, Skultetyova, L, Pomper, M, Lubkowski, J, Barinka, C. | 登録日 | 2014-01-08 | 公開日 | 2014-05-21 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Structural characterization of P1'-diversified urea-based inhibitors of glutamate carboxypeptidase II. Bioorg.Med.Chem.Lett., 24, 2014
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4OC4
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![BU of 4oc4 by Molmil](/molmil-images/mine/4oc4) | X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CPIBzL, a urea-based inhibitor N~2~-{[(1S)-1-carboxy-2-(pyridin-4-yl)ethyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | 著者 | Pavlicek, J, Ptacek, J, Cerny, J, Byun, Y, Skultetyova, L, Pomper, M, Lubkowski, J, Barinka, C. | 登録日 | 2014-01-08 | 公開日 | 2014-05-21 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | 主引用文献 | Structural characterization of P1'-diversified urea-based inhibitors of glutamate carboxypeptidase II. Bioorg.Med.Chem.Lett., 24, 2014
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4OC5
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![BU of 4oc5 by Molmil](/molmil-images/mine/4oc5) | X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CHIBzL, a urea-based inhibitor N~2~-{[(S)-carboxy(4-hydroxyphenyl)methyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | 著者 | Pavlicek, J, Ptacek, J, Cerny, J, Byun, Y, Skultetyova, L, Pomper, M, Lubkowski, J, Barinka, C. | 登録日 | 2014-01-08 | 公開日 | 2014-05-21 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structural characterization of P1'-diversified urea-based inhibitors of glutamate carboxypeptidase II. Bioorg.Med.Chem.Lett., 24, 2014
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4W9Y
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![BU of 4w9y by Molmil](/molmil-images/mine/4w9y) | |
8AQ8
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![BU of 8aq8 by Molmil](/molmil-images/mine/8aq8) | FAD-dependent monooxygenase from Stenotrophomonas maltophilia | 分子名称: | 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | 著者 | Maly, M, Kolenko, P, Duskova, J, Skalova, T, Dohnalek, J. | 登録日 | 2022-08-11 | 公開日 | 2023-07-12 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | 主引用文献 | Tetracycline-modifying enzyme SmTetX from Stenotrophomonas maltophilia. Acta Crystallogr.,Sect.F, 79, 2023
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7AVC
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![BU of 7avc by Molmil](/molmil-images/mine/7avc) | DoBi scaffold based on PIH1D1 N-terminal domain | 分子名称: | GLYCEROL, PIH1 domain-containing protein 1, SODIUM ION | 著者 | Kolenko, P, Pham, N.P, Pavlicek, J, Mikulecky, P, Schneider, B. | 登録日 | 2020-11-05 | 公開日 | 2021-02-10 | 最終更新日 | 2024-01-31 | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | 主引用文献 | Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution. Viruses, 13, 2021
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2LUF
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![BU of 2luf by Molmil](/molmil-images/mine/2luf) | |
6T3O
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![BU of 6t3o by Molmil](/molmil-images/mine/6t3o) | |
6SKH
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![BU of 6skh by Molmil](/molmil-images/mine/6skh) | X-ray structure of human glutamate carboxypeptidase II (GCPII) - the E424M inactive mutant, in complex with a inhibitor sulfamide inhibitor GluAsp | 分子名称: | (2~{S})-2-[[(2~{S})-1,4-bis(oxidanyl)-1,4-bis(oxidanylidene)butan-2-yl]sulfamoylamino]pentanedioic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Motlova, L, Novakova, Z, Barinka, C. | 登録日 | 2019-08-15 | 公開日 | 2020-08-26 | 最終更新日 | 2024-01-31 | 実験手法 | X-RAY DIFFRACTION (1.58 Å) | 主引用文献 | Structural, Biochemical, and Computational Characterization of Sulfamides as Bimetallic Peptidase Inhibitors. J.Chem.Inf.Model., 2024
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6ROS
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![BU of 6ros by Molmil](/molmil-images/mine/6ros) | REP related 18-mer DNA | 分子名称: | REP related 18-mer DNA from C. hominis, STRONTIUM ION | 著者 | Kolenko, P, Svoboda, J, Schneider, B. | 登録日 | 2019-05-13 | 公開日 | 2020-07-08 | 最終更新日 | 2024-05-01 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches. Acta Crystallogr D Struct Biol, 76, 2020
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6ROR
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![BU of 6ror by Molmil](/molmil-images/mine/6ror) | REP related 18-mer DNA | 分子名称: | REP related 18-mer DNA from C. hominis, STRONTIUM ION | 著者 | Kolenko, P, Svoboda, J, Schneider, B. | 登録日 | 2019-05-13 | 公開日 | 2020-07-08 | 最終更新日 | 2024-05-15 | 実験手法 | X-RAY DIFFRACTION (2.601 Å) | 主引用文献 | Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches. Acta Crystallogr D Struct Biol, 76, 2020
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6ROU
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![BU of 6rou by Molmil](/molmil-images/mine/6rou) | REP related 18-mer DNA | 分子名称: | REP related 18-mer DNA from H. parasuis, STRONTIUM ION | 著者 | Kolenko, P, Svoboda, J, Schneider, B. | 登録日 | 2019-05-13 | 公開日 | 2020-07-08 | 最終更新日 | 2024-05-01 | 実験手法 | X-RAY DIFFRACTION (2.902 Å) | 主引用文献 | Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches. Acta Crystallogr D Struct Biol, 76, 2020
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6SGP
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![BU of 6sgp by Molmil](/molmil-images/mine/6sgp) | X-ray structure of human glutamate carboxypeptidase II (GCPII) - the E424M inactive mutant, in complex with a sulfamide inhibitor GluGlu | 分子名称: | (2~{S})-2-[[(2~{S})-1,5-bis(oxidanyl)-1,5-bis(oxidanylidene)pentan-2-yl]sulfamoylamino]pentanedioic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Barinka, C, Shukla, S, Motlova, L. | 登録日 | 2019-08-05 | 公開日 | 2020-08-26 | 最終更新日 | 2024-01-31 | 実験手法 | X-RAY DIFFRACTION (1.58 Å) | 主引用文献 | Structural, Biochemical, and Computational Characterization of Sulfamides as Bimetallic Peptidase Inhibitors. J.Chem.Inf.Model., 2024
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2DM5
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![BU of 2dm5 by Molmil](/molmil-images/mine/2dm5) | Thermodynamic Penalty Arising From Burial of a Ligand Polar Group Within a Hydrophobic Pocket of a Protein Receptor | 分子名称: | CADMIUM ION, Major Urinary Protein, OCTANE-1,8-DIOL | 著者 | Barratt, E, Bronowska, A, Vondrasek, J, Bingham, R, Phillips, S, Homans, S.W. | 登録日 | 2006-04-20 | 公開日 | 2006-10-17 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Thermodynamic penalty arising from burial of a ligand polar group within a hydrophobic pocket of a protein receptor J.Mol.Biol., 362, 2006
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7Z7W
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![BU of 7z7w by Molmil](/molmil-images/mine/7z7w) | REP-related Chom18 variant with double GC base pairing | 分子名称: | Chom18-GC DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z82
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![BU of 7z82 by Molmil](/molmil-images/mine/7z82) | REP-related Chom18 variant with double AG mismatch | 分子名称: | Chom18-AG DNA, STRONTIUM ION | 著者 | Svoboda, J, Kolenko, P, Berdar, D, Schneider, B. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7U
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![BU of 7z7u by Molmil](/molmil-images/mine/7z7u) | REP-related Chom18 variant with double CG base pair | 分子名称: | Chom18-CG DNA, STRONTIUM ION | 著者 | Svoboda, J, Kolenko, P, Berdar, D, Schneider, B. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7L
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![BU of 7z7l by Molmil](/molmil-images/mine/7z7l) | REP-related Chom18 variant with double AC mismatch | 分子名称: | Chom18-AC DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7Y
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![BU of 7z7y by Molmil](/molmil-images/mine/7z7y) | REP-related Chom18 variant with double GT mismatch | 分子名称: | Chom18-GT DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7Z
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![BU of 7z7z by Molmil](/molmil-images/mine/7z7z) | REP-related Chom18 variant with double TA base pair | 分子名称: | Chom18-TA DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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