5DDQ
 
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5DDR
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5DDP
 | | L-glutamine riboswitch bound with L-glutamine | | 分子名称: | GLUTAMINE, MAGNESIUM ION, RNA (61-MER), ... | | 著者 | Ren, A, Patel, D.J. | | 登録日 | 2015-08-25 | | 公開日 | 2015-12-23 | | 最終更新日 | 2024-03-06 | | 実験手法 | X-RAY DIFFRACTION (2.302 Å) | | 主引用文献 | Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep, 13, 2015
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5DDO
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5K7E
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5K7C
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5K7D
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4ZNP
 | | The structure of A pfI Riboswitch Bound to ZMP | | 分子名称: | AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, MAGNESIUM ION, pfI Riboswitch | | 著者 | Ren, A, Patel, D.J, Rajashankar, R.K. | | 登録日 | 2015-05-05 | | 公開日 | 2015-08-26 | | 最終更新日 | 2024-03-06 | | 実験手法 | X-RAY DIFFRACTION (2.94 Å) | | 主引用文献 | Global RNA Fold and Molecular Recognition for a pfl Riboswitch Bound to ZMP, a Master Regulator of One-Carbon Metabolism.
Structure, 23, 2015
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4RGF
 | | Crystal structure of the in-line aligned env22 twister ribozyme soaked with Mn2+ | | 分子名称: | MAGNESIUM ION, MANGANESE (II) ION, POTASSIUM ION, ... | | 著者 | Ren, A, Rajashankar, K.R, Simanshu, D, Patel, D. | | 登録日 | 2014-09-30 | | 公開日 | 2014-12-03 | | 最終更新日 | 2024-02-28 | | 実験手法 | X-RAY DIFFRACTION (3.2008 Å) | | 主引用文献 | In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme.
Nat Commun, 5, 2014
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4RGE
 | | Crystal structure of the in-line aligned env22 twister ribozyme | | 分子名称: | MAGNESIUM ION, env22 twister ribozyme | | 著者 | Ren, A, Rajashankar, K.R, Simanshu, D, Patel, D. | | 登録日 | 2014-09-30 | | 公開日 | 2014-12-03 | | 最終更新日 | 2024-02-28 | | 実験手法 | X-RAY DIFFRACTION (2.89 Å) | | 主引用文献 | In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme.
Nat Commun, 5, 2014
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6LAU
 | | the wildtype SAM-VI riboswitch bound to SAH | | 分子名称: | CESIUM ION, GUANOSINE-5'-TRIPHOSPHATE, RNA (54-MER), ... | | 著者 | Ren, A, Sun, A. | | 登録日 | 2019-11-13 | | 公開日 | 2020-01-01 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (3.109 Å) | | 主引用文献 | SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
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6LAZ
 | | the wildtype SAM-VI riboswitch bound to a N-mustard SAM analog M1 | | 分子名称: | (2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-hydroxyethyl)amino]-2-azaniumyl-butanoate, MAGNESIUM ION, RNA (55-MER), ... | | 著者 | Ren, A, Sun, A. | | 登録日 | 2019-11-13 | | 公開日 | 2020-01-01 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.76 Å) | | 主引用文献 | SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
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6LAS
 | | the wildtype SAM-VI riboswitch bound to SAM | | 分子名称: | RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A | | 著者 | Ren, A, Sun, A. | | 登録日 | 2019-11-13 | | 公開日 | 2020-01-01 | | 実験手法 | X-RAY DIFFRACTION (2.708 Å) | | 主引用文献 | SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
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4X0G
 | | Structure of Bsg25A binding with DNA | | 分子名称: | ACETATE ION, Blastoderm-specific gene 25A, DNA (5'-D(*GP*TP*TP*CP*CP*AP*AP*TP*TP*GP*GP*AP*A)-3') | | 著者 | Ren, A. | | 登録日 | 2014-11-21 | | 公開日 | 2015-01-21 | | 最終更新日 | 2023-09-27 | | 実験手法 | X-RAY DIFFRACTION (3.2065 Å) | | 主引用文献 | Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family.
Genes Dev., 29, 2015
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6JQ6
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6JQ5
 | | The structure of Hatchet Ribozyme | | 分子名称: | MAGNESIUM ION, RNA (82-MER) | | 著者 | Ren, A, Zheng, L. | | 登録日 | 2019-03-29 | | 公開日 | 2019-06-12 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.059 Å) | | 主引用文献 | Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA, 116, 2019
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4IX7
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5DUN
 | | The crystal structure of OMe substituted twister ribozyme | | 分子名称: | MAGNESIUM ION, POTASSIUM ION, RNA (54-MER) | | 著者 | Ren, A, Patel, D.J, Micura, R, Rajashankar, K.R. | | 登録日 | 2015-09-19 | | 公開日 | 2015-10-28 | | 最終更新日 | 2023-09-27 | | 実験手法 | X-RAY DIFFRACTION (2.64 Å) | | 主引用文献 | A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class.
Angew.Chem.Int.Ed.Engl., 54, 2015
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6LAX
 | | the mutant SAM-VI riboswitch (U6C) bound to SAM | | 分子名称: | RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A | | 著者 | Sun, A, Ren, A. | | 登録日 | 2019-11-13 | | 公開日 | 2020-01-01 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | | 主引用文献 | SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
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5Y87
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5Y85
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7W27
 | | Crystal structure of BEND3-BEN4-DNA complex | | 分子名称: | BEN domain-containing protein 3, DNA (5'-D(P*GP*GP*AP*CP*CP*CP*AP*CP*GP*CP*AP*GP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*GP*CP*GP*TP*GP*GP*GP*TP*C)-3') | | 著者 | Zheng, L, Ren, A. | | 登録日 | 2021-11-22 | | 公開日 | 2022-02-23 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.49 Å) | | 主引用文献 | Distinct structural bases for sequence-specific DNA binding by mammalian BEN domain proteins.
Genes Dev., 36, 2022
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4YAZ
 | | 3',3'-cGAMP riboswitch bound with 3',3'-cGAMP | | 分子名称: | 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, MAGNESIUM ION, POTASSIUM ION, ... | | 著者 | Ren, A.M, Patel, D.J, Rajashankar, R.K. | | 登録日 | 2015-02-18 | | 公開日 | 2015-04-15 | | 最終更新日 | 2023-09-27 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch.
Cell Rep, 11, 2015
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4YB1
 | | 20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP | | 分子名称: | 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, MAGNESIUM ION, RNA (91-MER), ... | | 著者 | Ren, A.M, Patel, D.J, Rajashankar, R.K. | | 登録日 | 2015-02-18 | | 公開日 | 2015-04-15 | | 最終更新日 | 2024-02-28 | | 実験手法 | X-RAY DIFFRACTION (2.081 Å) | | 主引用文献 | Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch.
Cell Rep, 11, 2015
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4YB0
 | | 3',3'-cGAMP riboswitch bound with c-di-GMP | | 分子名称: | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | | 著者 | Ren, A.M, Patel, D.J, Rajashankar, R.K. | | 登録日 | 2015-02-18 | | 公開日 | 2015-04-15 | | 最終更新日 | 2023-09-27 | | 実験手法 | X-RAY DIFFRACTION (2.121 Å) | | 主引用文献 | Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch.
Cell Rep, 11, 2015
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