Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7K36
DownloadVisualize
BU of 7k36 by Molmil
Cryo-EM structure of STRIPAK complex
分子名称: INOSITOL HEXAKISPHOSPHATE, MANGANESE (II) ION, MOB-like protein phocein, ...
著者Jeong, B.-C, Bai, X.C.
登録日2020-09-10
公開日2021-03-10
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structure of the Hippo signaling integrator human STRIPAK.
Nat.Struct.Mol.Biol., 28, 2021
3NVK
DownloadVisualize
BU of 3nvk by Molmil
Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle
分子名称: 50S ribosomal protein L7Ae, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, NOP5/NOP56 related protein, ...
著者Xue, S, Wang, R, Li, H.
登録日2010-07-08
公開日2011-07-20
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.209 Å)
主引用文献Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle.
Mol.Cell, 39, 2010
2MNY
DownloadVisualize
BU of 2mny by Molmil
NMR Structure of KDM5B PHD1 finger
分子名称: Lysine-specific demethylase 5B, ZINC ION
著者Zhang, Y, Yang, H.R, Guo, X, Rong, N.Y, Song, Y.J, Xu, Y.W, Lan, W.X, Xu, Y.H, Cao, C.
登録日2014-04-16
公開日2014-08-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The PHD1 finger of KDM5B recognizes unmodified H3K4 during the demethylation of histone H3K4me2/3 by KDM5B.
Protein Cell, 5, 2014
3NVM
DownloadVisualize
BU of 3nvm by Molmil
Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle
分子名称: Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, NOP5/NOP56 related protein
著者Xue, S, Wang, R, Li, H.
登録日2010-07-08
公開日2011-07-20
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.408 Å)
主引用文献Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle.
Mol.Cell, 39, 2010
8J5P
DownloadVisualize
BU of 8j5p by Molmil
Cryo-EM structure of native RC-LH complex from Roseiflexus castenholzii at 2,000lux
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 2-methyl-3-[(2E,6E,10E,14E,18E,22E,26E,30E,34E,38E)-3,7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,1 4,18,22,26,30,34,38,42-undecaen-1-yl]naphthalene-1,4-dione, Alpha subunit of light-harvesting 1, ...
著者Xu, X, Xin, J.
登録日2023-04-24
公開日2023-09-20
最終更新日2023-10-04
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Carotenoid assembly regulates quinone diffusion and the Roseiflexus castenholzii reaction center-light harvesting complex architecture.
Elife, 12, 2023
8J5O
DownloadVisualize
BU of 8j5o by Molmil
Cryo-EM structure of native RC-LH complex from Roseiflexus castenholzii at 100lux
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 2-methyl-3-[(2E,6E,10E,14E,18E,22E,26E,30E,34E,38E)-3,7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,1 4,18,22,26,30,34,38,42-undecaen-1-yl]naphthalene-1,4-dione, Alpha subunit of light-harvesting 1, ...
著者Xu, X, Xin, J.
登録日2023-04-24
公開日2023-09-20
最終更新日2023-10-04
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Carotenoid assembly regulates quinone diffusion and the Roseiflexus castenholzii reaction center-light harvesting complex architecture.
Elife, 12, 2023
2MNZ
DownloadVisualize
BU of 2mnz by Molmil
NMR Structure of KDM5B PHD1 finger in complex with H3K4me0(1-10aa)
分子名称: H3K4me0, Lysine-specific demethylase 5B, ZINC ION
著者Zhang, Y, Yang, H.R, Guo, X, Rong, N.Y, Song, Y.J, Xu, Y.W, Lan, W.X, Xu, Y.H, Cao, C.
登録日2014-04-16
公開日2014-08-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The PHD1 finger of KDM5B recognizes unmodified H3K4 during the demethylation of histone H3K4me2/3 by KDM5B.
Protein Cell, 5, 2014
3NVI
DownloadVisualize
BU of 3nvi by Molmil
Structure of N-terminal truncated Nop56/58 bound with L7Ae and box C/D RNA
分子名称: 50S ribosomal protein L7Ae, NOP5/NOP56 related protein, RNA (5'-R(*CP*UP*CP*UP*GP*AP*CP*CP*GP*AP*AP*AP*GP*GP*CP*GP*UP*GP*AP*UP*GP*AP*GP*C)-3')
著者Li, H, Xue, S, Wang, R.
登録日2010-07-08
公開日2011-07-20
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.709 Å)
主引用文献Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle.
Mol.Cell, 39, 2010
6B1E
DownloadVisualize
BU of 6b1e by Molmil
The structure of DPP4 in complex with Vildagliptin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-{[(1r,3s,5R,7S)-3-hydroxytricyclo[3.3.1.1~3,7~]decan-1-yl]amino}-1-{(2S)-2-[(E)-iminomethyl]pyrrolidin-1-yl}ethan-1-o ne, ...
著者Scapin, G.
登録日2017-09-18
公開日2017-09-27
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献A comparative study of the binding properties, dipeptidyl peptidase-4 (DPP-4) inhibitory activity and glucose-lowering efficacy of the DPP-4 inhibitors alogliptin, linagliptin, saxagliptin, sitagliptin and vildagliptin in mice.
Endocrinol Diabetes Metab, 1, 2018
6B1O
DownloadVisualize
BU of 6b1o by Molmil
The structure of DPP4 in complex with Vildagliptin Analog
分子名称: (2S)-2-amino-1-[(1S,3S,5S)-3-(aminomethyl)-2-azabicyclo[3.1.0]hexan-2-yl]-2-[(1r,3R,5S,7S)-3,5-dihydroxytricyclo[3.3.1.1~3,7~]decan-1-yl]ethan-1-one, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Scapin, G.
登録日2017-09-18
公開日2017-09-27
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献A comparative study of the binding properties, dipeptidyl peptidase-4 (DPP-4) inhibitory activity and glucose-lowering efficacy of the DPP-4 inhibitors alogliptin, linagliptin, saxagliptin, sitagliptin and vildagliptin in mice.
Endocrinol Diabetes Metab, 1, 2018
6BEK
DownloadVisualize
BU of 6bek by Molmil
Structure of sIHF bound to an 8bp palindromic DNA
分子名称: DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3'), POTASSIUM ION, SCO1480
著者Guarne, A, Nanji, T.N, Shen, Y.
登録日2017-10-25
公開日2018-10-31
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Streptomyces IHF uses multiple interfaces to bind DNA.
Biochim Biophys Acta Gen Subj, 1863, 2019
1JRU
DownloadVisualize
BU of 1jru by Molmil
NMR STRUCTURE OF THE UBX DOMAIN FROM P47 (ENERGY MINIMISED AVERAGE)
分子名称: p47 protein
著者Yuan, X.M, Shaw, A, Zhang, X.D, Kondo, H, Lally, J, Freemont, P.S, Matthews, S.J.
登録日2001-08-15
公開日2001-08-17
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure and interaction surface of the C-terminal domain from p47: a major p97-cofactor involved in SNARE disassembly.
J.Mol.Biol., 311, 2001
3OZI
DownloadVisualize
BU of 3ozi by Molmil
Crystal structure of the TIR domain from the flax disease resistance protein L6
分子名称: COBALT (II) ION, L6tr
著者Ve, T, Bernoux, M, Williams, S, Valkov, E, Warren, C, Hatters, D, Ellis, J.G, Dodds, P.N, Kobe, B.
登録日2010-09-25
公開日2011-04-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural and Functional Analysis of a Plant Resistance Protein TIR Domain Reveals Interfaces for Self-Association, Signaling, and Autoregulation.
Cell Host Microbe, 9, 2011
3P8B
DownloadVisualize
BU of 3p8b by Molmil
X-ray crystal structure of Pyrococcus furiosus transcription elongation factor Spt4/5
分子名称: BETA-MERCAPTOETHANOL, DNA-directed RNA polymerase, subunit e'', ...
著者Murakami, K.S, Klein, B.J.
登録日2010-10-13
公開日2011-01-26
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献RNA polymerase and transcription elongation factor Spt4/5 complex structure.
Proc.Natl.Acad.Sci.USA, 108, 2011
7L4X
DownloadVisualize
BU of 7l4x by Molmil
YTH Domain of Human YTHDC1 with dsDNA Comprising Single N6mA joined by two six-bp DNA duplexes in P3221 Crystal
分子名称: 1,2-ETHANEDIOL, YTH domain-containing protein 1, ssDNA w/N6A
著者Horton, J.R, Cheng, X.
登録日2020-12-21
公開日2021-11-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Human MettL3-MettL14 RNA adenine methyltransferase complex is active on double-stranded DNA containing lesions.
Nucleic Acids Res., 49, 2021
7L4Y
DownloadVisualize
BU of 7l4y by Molmil
YTH Domain of Human YTHDC1 with dsDNA Comprising Single N6mA joined by Two Six-bp DNA Duplexes in P212121 Crystal
分子名称: 1,2-ETHANEDIOL, YTH domain-containing protein 1, ssDNA 13mer
著者Horton, J.R, Cheng, X.
登録日2020-12-21
公開日2021-11-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Human MettL3-MettL14 RNA adenine methyltransferase complex is active on double-stranded DNA containing lesions.
Nucleic Acids Res., 49, 2021
7L4V
DownloadVisualize
BU of 7l4v by Molmil
C-terminal bZIP domain of human C/EBPbeta Bound to DNA with Consensus Recognition with GT Mismatch
分子名称: 1,2-ETHANEDIOL, CCAAT/enhancer-binding protein beta, DNA Strand 1, ...
著者Horton, J.R, Cheng, X.
登録日2020-12-21
公開日2021-11-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Preferential CEBP binding to T:G mismatches and increased C-to-T human somatic mutations.
Nucleic Acids Res., 49, 2021
3NMU
DownloadVisualize
BU of 3nmu by Molmil
Crystal Structure of substrate-bound halfmer box C/D RNP
分子名称: 50S ribosomal protein L7Ae, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, NOP5/NOP56 related protein, ...
著者Li, H, Xue, S, Wang, R.
登録日2010-06-22
公開日2011-05-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.729 Å)
主引用文献Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle.
Mol.Cell, 39, 2010
3NCA
DownloadVisualize
BU of 3nca by Molmil
X-ray structure of ketohexokinase in complex with a thieno pyridinol compound
分子名称: Ketohexokinase, SULFATE ION, thieno[3,2-b]pyridin-7-ol
著者Abad, M.C, Gibbs, A.C, Spurlino, J.C.
登録日2010-06-04
公開日2010-12-22
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.602 Å)
主引用文献Electron density guided fragment-based lead discovery of ketohexokinase inhibitors.
J.Med.Chem., 53, 2010
8K9F
DownloadVisualize
BU of 8k9f by Molmil
Cryo-EM structure of the photosynthetic alternative complex III from Chloroflexus aurantiacus at 2.9 angstrom
分子名称: 1,3-bis(13-methyltetradecanoyloxy)propan-2-yl pentadecanoate, Cytochrome c domain-containing protein, Cytochrome c7-like domain-containing protein, ...
著者Xu, X.
登録日2023-08-01
公開日2024-03-06
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Cryo-EM structure of HQNO-bound Alternative Complex III from the anoxygenic phototrophic bacterium Chloroflexus aurantiacus.
Plant Cell, 2024
8K9E
DownloadVisualize
BU of 8k9e by Molmil
Cryo-EM structure of the photosynthetic alternative complex III from Chloroflexus aurantiacus at 3.3 angstrom
分子名称: 1,3-bis(13-methyltetradecanoyloxy)propan-2-yl pentadecanoate, Cytochrome c domain-containing protein, Cytochrome c7-like domain-containing protein, ...
著者Xu, X.
登録日2023-08-01
公開日2024-03-06
実験手法ELECTRON MICROSCOPY (3.33 Å)
主引用文献Cryo-EM structure of HQNO-bound Alternative Complex III from the anoxygenic phototrophic bacterium Chloroflexus aurantiacus.
Plant Cell, 2024
6NW9
DownloadVisualize
BU of 6nw9 by Molmil
CRYSTAL STRUCTURE OF A TAILSPIKE PROTEIN 3 (TSP3, ORF212) FROM ESCHERICHIA COLI O157:H7 BACTERIOPHAGE CBA120
分子名称: 1,2-ETHANEDIOL, CARBONATE ION, CHLORIDE ION, ...
著者Greenfield, J.Y, Herzberg, O.
登録日2019-02-06
公開日2019-06-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure and tailspike glycosidase machinery of ORF212 from E. coli O157:H7 phage CBA120 (TSP3).
Sci Rep, 9, 2019
7CBQ
DownloadVisualize
BU of 7cbq by Molmil
Crystal structure of PDE4D catalytic domain in complex with Apremilast
分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, N-{2-[(1S)-1-(3-ethoxy-4-methoxyphenyl)-2-(methylsulfonyl)ethyl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}acetamide, ...
著者Zhang, X.L, Xu, Y.C.
登録日2020-06-13
公開日2021-01-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Design, synthesis, and biological evaluation of tetrahydroisoquinolines derivatives as novel, selective PDE4 inhibitors for antipsoriasis treatment.
Eur.J.Med.Chem., 211, 2021
7LNI
DownloadVisualize
BU of 7lni by Molmil
SeMet CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA
分子名称: 1,2-ETHANEDIOL, DNA Strand 1, DNA Strand 2, ...
著者Horton, J.R, Cheng, X, Zhou, J.
登録日2021-02-07
公開日2021-05-19
最終更新日2021-07-14
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Clostridioides difficile specific DNA adenine methyltransferase CamA squeezes and flips adenine out of DNA helix.
Nat Commun, 12, 2021
7LT5
DownloadVisualize
BU of 7lt5 by Molmil
CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Cofactor SAH
分子名称: 1,2-ETHANEDIOL, DNA Strand 1, DNA Strand 2, ...
著者Horton, J.R, Cheng, X, Zhou, J.
登録日2021-02-18
公開日2021-05-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献Clostridioides difficile specific DNA adenine methyltransferase CamA squeezes and flips adenine out of DNA helix.
Nat Commun, 12, 2021

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon