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7UB6
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SARS-CoV-2 Omicron-BA.2 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Stalls, V, Acharya, P.
登録日2022-03-14
公開日2022-04-20
最終更新日2022-07-13
実験手法ELECTRON MICROSCOPY (3.52 Å)
主引用文献Cryo-EM structures of SARS-CoV-2 Omicron BA.2 spike.
Cell Rep, 39, 2022
7UB5
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BU of 7ub5 by Molmil
SARS-CoV-2 Omicron-BA.2 3-RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-Omicron-BA.2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Stalls, V, Acharya, P.
登録日2022-03-14
公開日2022-04-20
最終更新日2022-07-13
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Cryo-EM structures of SARS-CoV-2 Omicron BA.2 spike.
Cell Rep, 39, 2022
5UKP
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BU of 5ukp by Molmil
Structure of unliganded anti-gp120 CD4bs antibody DH522.1 Fab
分子名称: DH522.1 Fab fragment heavy chain, DH522.1 Fab fragment light chain
著者Nicely, N.I.
登録日2017-01-23
公開日2017-12-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Initiation of HIV neutralizing B cell lineages with sequential envelope immunizations.
Nat Commun, 8, 2017
5UKN
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BU of 5ukn by Molmil
Structure of unliganded anti-gp120 CD4bs antibody DH522UCA Fab
分子名称: CHLORIDE ION, DH522UCA Fab fragment heavy chain, DH522UCA Fab fragment light chain
著者Nicely, N.I.
登録日2017-01-23
公開日2017-12-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Initiation of HIV neutralizing B cell lineages with sequential envelope immunizations.
Nat Commun, 8, 2017
5UKO
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BU of 5uko by Molmil
Structure of unliganded anti-gp120 CD4bs antibody DH522IA Fab
分子名称: DH522IA Fab fragment heavy chain, DH522IA Fab fragment light chain
著者Nicely, N.I.
登録日2017-01-23
公開日2017-12-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Initiation of HIV neutralizing B cell lineages with sequential envelope immunizations.
Nat Commun, 8, 2017
5UKR
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BU of 5ukr by Molmil
Structure of unliganded anti-gp120 CD4bs antibody DH522.2 Fab in complex with a gp120 core
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Chimeric B.YU2 gp120 core derived from HIV-1 Env, DH522.2 Fab fragment heavy chain, ...
著者Nicely, N.I.
登録日2017-01-23
公開日2017-12-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.712 Å)
主引用文献Initiation of HIV neutralizing B cell lineages with sequential envelope immunizations.
Nat Commun, 8, 2017
5UKQ
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BU of 5ukq by Molmil
Structure of unliganded anti-gp120 CD4bs antibody DH522.2 Fab
分子名称: DH522.2 Fab fragment heavy chain, DH522.2 Fab fragment light chain, GLYCEROL
著者Nicely, N.I.
登録日2017-01-23
公開日2017-12-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Initiation of HIV neutralizing B cell lineages with sequential envelope immunizations.
Nat Commun, 8, 2017
7BH8
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BU of 7bh8 by Molmil
3H4-Fab HLA-E-VL9 co-complex
分子名称: 3H4 Fab heavy chain, 3H4 Fab light chain, Beta-2-microglobulin, ...
著者Walters, L.C, Rozbesky, D.
登録日2021-01-10
公開日2022-04-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mouse and human antibodies bind HLA-E-leader peptide complexes and enhance NK cell cytotoxicity.
Commun Biol, 5, 2022
2A6T
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BU of 2a6t by Molmil
Crystal structure of S.pombe mRNA decapping enzyme Dcp2p
分子名称: SPAC19A8.12
著者She, M, Chen, N, Song, H.
登録日2005-07-04
公開日2005-12-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure and functional analysis of Dcp2p from Schizosaccharomyces pombe
Nat.Struct.Mol.Biol., 13, 2006
5IQ7
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BU of 5iq7 by Molmil
Crystal structure of 10E8-S74W Fab in complex with an HIV-1 gp41 peptide.
分子名称: 10E8-S74W Heavy Chain, 10E8-S74W Light Chain, gp41 MPER peptide
著者Ofek, G, Kwon, Y.D, Caruso, W, Kwong, P.D.
登録日2016-03-10
公開日2016-04-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.2869 Å)
主引用文献Optimization of the Solubility of HIV-1-Neutralizing Antibody 10E8 through Somatic Variation and Structure-Based Design.
J.Virol., 90, 2016
5IQ9
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BU of 5iq9 by Molmil
Crystal structure of 10E8v4 Fab in complex with an HIV-1 gp41 peptide.
分子名称: 10E8v4 Heavy Chain, 10E8v4 Light Chain, gp41 MPER peptide
著者Ofek, G, Kwon, Y.D, Caruso, W, Kwong, P.D.
登録日2016-03-10
公開日2016-04-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Optimization of the Solubility of HIV-1-Neutralizing Antibody 10E8 through Somatic Variation and Structure-Based Design.
J.Virol., 90, 2016
7UPY
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BU of 7upy by Molmil
An antibody from single human VH-rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Zhang, J, Luo, S, Kreutzberger, A, Kirchhausen, T, Chen, B, Haynes, B, Alt, F.
登録日2022-04-18
公開日2022-08-10
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献An antibody from single human V H -rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion.
Sci Immunol, 7, 2022
7UPX
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BU of 7upx by Molmil
Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment (local refinement of the RBD and Fab variable domains)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, SP1-77 Fab heavy chain, SP1-77 Fab light chain, ...
著者Zhang, J, Luo, S, Kreutzberger, A, Kirchhausen, T, Chen, B, Haynes, B, Alt, F.
登録日2022-04-18
公開日2022-08-10
最終更新日2023-08-23
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献An antibody from single human V H -rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion.
Sci Immunol, 7, 2022
7UPW
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BU of 7upw by Molmil
Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Zhang, J, Luo, S, Kreutzberger, A, Kirchhausen, T, Chen, B, Haynes, B, Alt, F.
登録日2022-04-18
公開日2022-08-10
最終更新日2023-08-23
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献An antibody from single human V H -rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion.
Sci Immunol, 7, 2022
4DQO
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BU of 4dqo by Molmil
Crystal Structure of PG16 Fab in Complex with V1V2 Region from HIV-1 strain ZM109
分子名称: 1FD6-V1V2 scaffold ZM109 HIV-1 strain, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PG16 Fab Heavy Chain, ...
著者Pancera, M, McLellan, J.S, Kwong, P.D.
登録日2012-02-16
公開日2013-03-06
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.438 Å)
主引用文献Structural basis for diverse N-glycan recognition by HIV-1-neutralizing V1-V2-directed antibody PG16.
Nat.Struct.Mol.Biol., 20, 2013
5UIX
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BU of 5uix by Molmil
Crystal Structure of the DH576 CD4bs Fab (unliganded) from the RV305 HIV Vaccine Trial
分子名称: DH576 Fab heavy chain, DH576 Fab light chain
著者Fera, D, Harrison, S.C.
登録日2017-01-15
公開日2017-03-08
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Boosting of HIV envelope CD4 binding site antibodies with long variable heavy third complementarity determining region in the randomized double blind RV305 HIV-1 vaccine trial.
PLoS Pathog., 13, 2017
8V1L
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BU of 8v1l by Molmil
Crystal structure of the NTF2L domain of human G3BP1 in complex with small molecule
分子名称: N-[(2S)-2-fluoro-4,4-dimethylpentanoyl]-3-hydroxy-L-valyl-(betaS)-beta-methyl-L-phenylalanyl-D-alanyl-N-benzyl-N,O-dimethyl-L-homoserinamide, Ras GTPase-activating protein-binding protein 1
著者Hughes, M.P, Taylor, J.P.
登録日2023-11-20
公開日2024-02-14
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Identification of small molecule inhibitors of G3BP-driven stress granule formation.
J.Cell Biol., 223, 2024
3D3K
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BU of 3d3k by Molmil
Crystal structure of human Edc3p
分子名称: Enhancer of mRNA-decapping protein 3
著者Ling, S.H.M.
登録日2008-05-12
公開日2008-08-26
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of human Edc3 and its functional implications
Mol.Cell.Biol., 28, 2008
3D3J
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BU of 3d3j by Molmil
Crystal structure of human Edc3p
分子名称: Enhancer of mRNA-decapping protein 3
著者Ling, S.H.M.
登録日2008-05-12
公開日2008-08-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of human Edc3 and its functional implications
Mol.Cell.Biol., 28, 2008
4B6H
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BU of 4b6h by Molmil
Structure of hDcp1a in complex with proline rich sequence of PNRC2
分子名称: MRNA-DECAPPING ENZYME 1A, PROLINE-RICH NUCLEAR RECEPTOR COACTIVATOR 2
著者Lai, T, Song, H.
登録日2012-08-13
公開日2013-03-06
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Basis of the Pnrc2-Mediated Link between Mrna Surveillance and Decapping.
Structure, 20, 2012
2QKL
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BU of 2qkl by Molmil
The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex
分子名称: LEAD (II) ION, SPAC19A8.12 protein, SPBC3B9.21 protein
著者She, M, Chen, N, Song, H.
登録日2007-07-11
公開日2008-03-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Structural basis of dcp2 recognition and activation by dcp1.
Mol.Cell, 29, 2008
2QKM
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BU of 2qkm by Molmil
The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, SPAC19A8.12 protein, SPBC3B9.21 protein
著者She, M, Song, H.
登録日2007-07-11
公開日2008-04-15
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis of dcp2 recognition and activation by dcp1.
Mol.Cell, 29, 2008
5IQZ
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BU of 5iqz by Molmil
Crystal structure of N-terminal domain of Human SIRT7
分子名称: SIRT7 protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Thakur, K.G, Priyanka, A.
登録日2016-03-11
公開日2016-07-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.334 Å)
主引用文献Crystal structure of the N-terminal domain of human SIRT7 reveals a three-helical domain architecture
Proteins, 84, 2016
1XMM
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BU of 1xmm by Molmil
Structure of human Dcps bound to m7GDP
分子名称: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE, PHOSPHATE ION, ...
著者Chen, N, Song, H.
登録日2004-10-04
公開日2005-03-22
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures of human DcpS in ligand-free and m7GDP-bound forms suggest a dynamic mechanism for scavenger mRNA decapping.
J.Mol.Biol., 347, 2005
1XML
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BU of 1xml by Molmil
Structure of human Dcps
分子名称: PHOSPHATE ION, heat shock-like protein 1
著者Chen, N, Song, H.
登録日2004-10-04
公開日2005-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of human DcpS in ligand-free and m7GDP-bound forms suggest a dynamic mechanism for scavenger mRNA decapping.
J.Mol.Biol., 347, 2005

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