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3IIA
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BU of 3iia by Molmil
Crystal structure of apo (91-244) RIa subunit of cAMP-dependent protein kinase
分子名称: GLYCEROL, cAMP-dependent protein kinase type I-alpha regulatory subunit
著者Sjoberg, T.J, Kim, C, Kornev, A.P, Taylor, S.S.
登録日2009-07-31
公開日2010-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Cyclic AMP analog blocks kinase activation by stabilizing inactive conformation: conformational selection highlights a new concept in allosteric inhibitor design.
Mol.Cell Proteomics, 10, 2011
1ZN0
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BU of 1zn0 by Molmil
Coordinates of RRF and EF-G fitted into Cryo-EM map of the 50S subunit bound with both EF-G (GDPNP) and RRF
分子名称: 16S RIBOSOMAL RNA, ELONGATION FACTOR G, Ribosome recycling factor
著者Gao, N, Zavialov, A.V, Li, W, Sengupta, J, Valle, M, Gursky, R.P, Ehrenberg, M, Frank, J.
登録日2005-05-11
公開日2005-06-14
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (15.5 Å)
主引用文献Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
1ZN1
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BU of 1zn1 by Molmil
Coordinates of RRF fitted into Cryo-EM map of the 70S post-termination complex
分子名称: 30S ribosomal protein S12, Ribosome recycling factor, ribosomal 16S RNA, ...
著者Gao, N, Zavialov, A.V, Li, W, Sengupta, J, Valle, M, Gursky, R.P, Ehrenberg, M, Frank, J.
登録日2005-05-11
公開日2005-06-14
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (14.1 Å)
主引用文献Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
2HVD
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BU of 2hvd by Molmil
Human nucleoside diphosphate kinase A complexed with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase A
著者Giraud, M.-F, Georgescauld, F, Lascu, I, Dautant, A.
登録日2006-07-28
公開日2006-09-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal Structures of S120G Mutant and Wild Type of Human Nucleoside Diphosphate Kinase A in Complex with ADP
J.Bioenerg.Biomembr., 38, 2006
2HVE
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BU of 2hve by Molmil
S120G mutant of human nucleoside diphosphate kinase A complexed with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase A
著者Giraud, M.-F, Georgescauld, F, Lascu, I, Dautant, A.
登録日2006-07-28
公開日2006-09-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.402 Å)
主引用文献Crystal Structures of S120G Mutant and Wild Type of Human Nucleoside Diphosphate Kinase A in Complex with ADP
J.Bioenerg.Biomembr., 38, 2006
8B6A
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BU of 8b6a by Molmil
Crystal structure of BfrB protein from Bacteroides fragilis NCTC 9343
分子名称: Conserved hypothetical lipoprotein, GLYCEROL, SULFATE ION
著者Antonyuk, S.V, Strange, R.W, Olczak, T.
登録日2022-09-26
公開日2023-05-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Bacteroides fragilis expresses three proteins similar to Porphyromonas gingivalis HmuY: Hemophore-like proteins differentially evolved to participate in heme acquisition in oral and gut microbiomes.
Faseb J., 37, 2023
5LV6
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BU of 5lv6 by Molmil
N-terminal motif dimerization of EGFR transmembrane domain in bicellar environment
分子名称: Epidermal growth factor receptor
著者Bragin, P, Bocharov, E, Mineev, K, Bocharova, O, Arseniev, A.
登録日2016-09-12
公開日2017-04-05
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献The Conformation of the Epidermal Growth Factor Receptor Transmembrane Domain Dimer Dynamically Adapts to the Local Membrane Environment.
Biochemistry, 56, 2017
4WYJ
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BU of 4wyj by Molmil
Adenovirus 3 head domain mutant V239D
分子名称: Fiber protein, SULFATE ION
著者Lieber, A, Zubieta, C, Fender, P.
登録日2014-11-17
公開日2015-07-01
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Preclinical safety and efficacy studies with an affinity-enhanced epithelial junction opener and PEGylated liposomal doxorubicin.
Mol Ther Methods Clin Dev, 2, 2015
4XEB
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BU of 4xeb by Molmil
The structure of P. funicolosum Cel7A
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Glucanase, ...
著者Alahuhta, P.M, Lunin, V.V.
登録日2014-12-23
公開日2016-06-22
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Engineering enhanced cellobiohydrolase activity
Nat Commun, 9(1), 2018
6B7L
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BU of 6b7l by Molmil
Aeromonas veronii immune modulator A
分子名称: CHLORIDE ION, FORMIC ACID, immune modulator A
著者Sweeney, E.S, Remington, S.J, Perkins, A.
登録日2017-10-04
公開日2018-10-03
最終更新日2022-03-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A bacterial immunomodulatory protein with lipocalin-like domains facilitates host-bacteria mutualism in larval zebrafish.
Elife, 7, 2018
7VNW
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BU of 7vnw by Molmil
Crystal Structure of tRNAVal from Sulfolobus Tokodaii(Dephosphorylated)
分子名称: RNA (78-MER)
著者Yamashita, S, Ohira, T, Suzuki, T, Tomtia, K.
登録日2021-10-12
公開日2022-05-04
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance.
Nature, 605, 2022
7VNV
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BU of 7vnv by Molmil
Crystal Structure of tRNAVal from Sulfolobus Tokodaii
分子名称: RNA (78-MER)
著者Yamashita, S, Ohira, T, Suzuki, T, Tomtia, K.
登録日2021-10-12
公開日2022-05-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance.
Nature, 605, 2022
6R2H
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BU of 6r2h by Molmil
Crystal structure of Apo PinO from Porphyromonas gingivitis
分子名称: GLYCEROL, HmuY protein
著者Antonyuk, S.V, Bielecki, M, Strange, R.W, Capper, M, Olczak, T, Olczak, M.
登録日2019-03-17
公開日2020-01-15
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Prevotella intermedia produces two proteins homologous to Porphyromonas gingivalis HmuY but with different heme coordination mode.
Biochem.J., 477, 2020
4URG
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BU of 4urg by Molmil
Crystal Structure of GGDEF domain from T.maritima (active-like dimer)
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DIGUANYLATE CYCLASE
著者Deepthi, A, Liew, C.W, Liang, Z.X, Swaminathan, K, Lescar, J.
登録日2014-06-30
公開日2014-10-08
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of a Diguanylate Cyclase from Thermotoga Maritima: Insights Into Activation, Feedback Inhibition and Thermostability
Plos One, 9, 2014
4L0Y
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BU of 4l0y by Molmil
Crystal structure of Runx1 and Ets1 bound to TCR alpha promoter (crystal form 1)
分子名称: 5'-D(*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3', 5'-D(*GP*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*T)-3', Protein C-ets-1, ...
著者Tahirov, T.H.
登録日2013-06-01
公開日2014-03-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis of Ets1 activation by Runx1.
Leukemia, 28, 2014
4L18
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BU of 4l18 by Molmil
Crystal structure of Runx1 and Ets1 bound to TCR alpha promoter (crystal form 3)
分子名称: 5'-D(*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3', 5'-D(*GP*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*T)-3', GLYCEROL, ...
著者Tahirov, T.H.
登録日2013-06-02
公開日2014-03-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of Ets1 activation by Runx1.
Leukemia, 28, 2014
4L0Z
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BU of 4l0z by Molmil
Crystal structure of Runx1 and Ets1 bound to TCR alpha promoter (crystal form 2)
分子名称: 5'-D(*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3', 5'-D(*GP*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*T)-3', Protein C-ets-1, ...
著者Tahirov, T.H.
登録日2013-06-01
公開日2014-03-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis of Ets1 activation by Runx1.
Leukemia, 28, 2014
5B36
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BU of 5b36 by Molmil
Crystal Structure of the O-Phosphoserine Sulfhydrylase from Aeropyrum pernix Complexed with Cysteine
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CYSTEINE, PYRIDOXAL-5'-PHOSPHATE, ...
著者Nakamura, T, Takeda, E, Kawai, Y, Kataoka, M, Ishikawa, K.
登録日2016-02-10
公開日2016-03-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Role of F225 in O-phosphoserine sulfhydrylase from Aeropyrum pernix K1
Extremophiles, 20, 2016
5B3A
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BU of 5b3a by Molmil
Crystal Structure of O-Phoshoserine Sulfhydrylase from Aeropyrum pernix in Complexed with the alpha-Aminoacrylate Intermediate
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid, Protein CysO
著者Nakamura, T, Takeda, E, Kawai, Y, Kataoka, M, Ishikawa, K.
登録日2016-02-12
公開日2016-03-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Role of F225 in O-phosphoserine sulfhydrylase from Aeropyrum pernix K1
Extremophiles, 20, 2016
7WKI
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BU of 7wki by Molmil
Structure of the ultra-affinity complex between CFH and a nanobody
分子名称: Anti-CFH nanobody (VHH), Complement factor H
著者Caaveiro, J.M.M, Yokoo, T, Tsumoto, K.
登録日2022-01-10
公開日2022-11-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Antibody recognition of complement factor H reveals a flexible loop involved in atypical hemolytic uremic syndrome pathogenesis.
J.Biol.Chem., 298, 2022
5IT3
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BU of 5it3 by Molmil
Swirm domain of human Lsd1
分子名称: Lysine-specific histone demethylase 1A, MAGNESIUM ION
著者Jeffrey, P.D, Yuan, P.
登録日2016-03-16
公開日2016-05-18
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献A Tlx-interacting peptide of Lsd1 inhibits the proliferation of brain tumor stem cells
To Be Published
8JOW
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BU of 8jow by Molmil
Crystal structure of rabbit antibody with phosphorylated peptide bound
分子名称: ARG-PRO-HIS-PHE-PRO-GLN-PHE-SEP-TYR-SER-ALA-SER, Antibody (scFv), CHLORIDE ION
著者Caaveiro, J.M.M, Kawade, R, Tsumoto, K.
登録日2023-06-08
公開日2024-06-12
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Origin of high binding affinity and selectivity of phosphorylated epitope-specific rabbit antibodies
To Be Published
6LRA
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BU of 6lra by Molmil
The complex structure of PHF core domain peptide of tau and antibody's Fab domain.
分子名称: Fab Heavy Chain, Fab Light Chain, VQIINK
著者Tomohiro, T, Kouki, S, Tomohiro, S, Takahiro, T, Katsushiro, M, Yasuko, I, Katsuhiko, M, Taizo, T, Toshimitsu, I, Koji, T.
登録日2020-01-15
公開日2020-08-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the human tau PHF core domain VQIINK complexed with the Fab domain of monoclonal antibody Tau2r3.
Febs Lett., 2020
6F6O
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BU of 6f6o by Molmil
Structure of Adenovirus 3 fiber head V239D mutant
分子名称: Fiber protein
著者Zubieta, C, Fender, P, Stermann, E, Lieber, A.
登録日2017-12-05
公開日2018-12-19
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Preclinical safety and efficacy studies with an affinity-enhanced epithelial junction opener and PEGylated liposomal doxorubicin.
Mol Ther Methods Clin Dev, 2, 2015
3RGA
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BU of 3rga by Molmil
Crystal structure of epoxide hydrolase for polyether lasalocid A biosynthesis
分子名称: (4R,5S)-3-[(2R)-2-{(2S,2'R,4S,5S,5'R)-2,5'-diethyl-5'-[(1S)-1-hydroxyethyl]-4-methyloctahydro-2,2'-bifuran-5-yl}butanoyl]-4-methyl-5-phenyl-1,3-oxazolidin-2-one, (4R,5S)-3-[(2R,3S,4S)-2-ethyl-5-[(3R)-2-ethyl-3-[2-[(2R,3R)-2-ethyl-3-methyl-oxiran-2-yl]ethyl]oxiran-2-yl]-3-hydroxy-4-methyl-pentanoyl]-4-methyl-5-phenyl-1,3-oxazolidin-2-one, ACETATE ION, ...
著者Hotta, K, Mathews, I.I, Chen, X, Kim, C.-Y.
登録日2011-04-08
公開日2012-03-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Enzymatic catalysis of anti-Baldwin ring closure in polyether biosynthesis
Nature, 483, 2012

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