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8R8Q
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Lysosomal peptide transporter
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycosylated lysosomal membrane protein, Major facilitator superfamily domain-containing protein 1
著者Jungnickel, K.E.J, Loew, C.
登録日2023-11-29
公開日2024-05-01
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (4.08 Å)
主引用文献MFSD1 with its accessory subunit GLMP functions as a general dipeptide uniporter in lysosomes
Nature Cell Biology, 2024
8K5Y
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Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
分子名称: (3-azanyl-4-fluoranyl-5,7,8,9-tetrahydropyrido[4,3-c]azepin-6-yl)-[6-(2-oxidanylpropan-2-yl)-1H-indol-2-yl]methanone, CALCIUM ION, DIHYDROGENPHOSPHATE ION, ...
著者Kamitani, M, Mima, M, Nishikawa-Shimono, R.
登録日2023-07-24
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Discovery of novel indole derivatives as potent and selective inhibitors of proMMP-9 activation.
Bioorg.Med.Chem.Lett., 97, 2023
8K5X
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Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
分子名称: (6-cyclopropyl-1~{H}-indol-2-yl)-(5,7,8,9-tetrahydropyrido[4,3-c]azepin-6-yl)methanone, CALCIUM ION, CHLORIDE ION, ...
著者Kamitani, M, Mima, M, Nishikawa-Shimono, R.
登録日2023-07-24
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Discovery of novel indole derivatives as potent and selective inhibitors of proMMP-9 activation.
Bioorg.Med.Chem.Lett., 97, 2023
8K5W
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Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
分子名称: 2-[[5-fluoranyl-7-(methylamino)-1H-indol-2-yl]carbonyl]-N-(2-pyrrol-1-ylethyl)-3,4-dihydro-1H-isoquinoline-7-carboxamide, CALCIUM ION, DIHYDROGENPHOSPHATE ION, ...
著者Kamitani, M, Mima, M, Nishikawa-Shimono, R.
登録日2023-07-24
公開日2023-12-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Discovery of novel indole derivatives as potent and selective inhibitors of proMMP-9 activation.
Bioorg.Med.Chem.Lett., 97, 2023
8K5V
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Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
分子名称: 6,7-dihydro-4H-[1,3]oxazolo[4,5-c]pyridin-5-yl-(7-ethyl-2H-indazol-3-yl)methanone, CALCIUM ION, DIHYDROGENPHOSPHATE ION, ...
著者Kamitani, M, Mima, M, Nishikawa-Shimono, R.
登録日2023-07-24
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Discovery of novel indole derivatives as potent and selective inhibitors of proMMP-9 activation.
Bioorg.Med.Chem.Lett., 97, 2023
1TCG
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STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS
分子名称: MU-CONOTOXIN GIIIA
著者Kohda, D, Lancelin, J.-M, Inagaki, F, Wakamatsu, K.
登録日1992-12-12
公開日1994-01-31
最終更新日2017-11-29
実験手法SOLUTION NMR
主引用文献Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations.
Biochemistry, 31, 1992
1TCJ
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STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS
分子名称: MU-CONOTOXIN GIIIA
著者Kohda, D, Lancelin, J.-M, Inagaki, F, Wakamatsu, K.
登録日1992-12-12
公開日1994-01-31
最終更新日2017-11-29
実験手法SOLUTION NMR
主引用文献Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations.
Biochemistry, 31, 1992
1HJB
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CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
分子名称: CCAAT/ENHANCER BINDING PROTEIN BETA, DNA (5'-(*CP*CP*GP*CP*AP*AP*CP*CP*AP*CP* AP*GP*AP*GP*TP*TP*TP*GP*GP*AP*AP*AP*TP*CP*TP*T)-3'), DNA (5'-(*GP*AP*AP*GP*AP*TP*TP*TP*CP*CP* AP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP*TP*TP*GP*CP*G)-3'), ...
著者Tahirov, T.H, Ogata, K.
登録日2001-01-11
公開日2001-03-09
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta
Cell(Cambridge,Mass.), 104, 2001
1HJC
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CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
分子名称: DNA (5'-(*GP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP* TP*TP*GP*CP*G)-3'), DNA (5'-(CP*CP*GP*CP*AP*AP*CP*CP*AP*CP*AP* GP*AP*GP*TP*T)-3'), RUNT-RELATED TRANSCRIPTION FACTOR 1
著者Tahirov, T.H, Ogata, K.
登録日2001-01-11
公開日2001-03-09
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta
Cell(Cambridge,Mass.), 104, 2001
1IO4
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CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
分子名称: CAAT/ENHANCER BINDING PROTEIN BETA, CORE-BINDING FACTOR, BETA SUBUNIT, ...
著者Tahirov, T.H, Ogata, K.
登録日2001-01-10
公開日2001-03-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta.
Cell(Cambridge,Mass.), 104, 2001
1TCK
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BU of 1tck by Molmil
STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS
分子名称: MU-CONOTOXIN GIIIA
著者Lancelin, J.-M, Kohda, D, Inagaki, F.
登録日1992-12-12
公開日1994-01-31
最終更新日2017-11-29
実験手法SOLUTION NMR
主引用文献Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations.
Biochemistry, 31, 1992
1TCH
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BU of 1tch by Molmil
STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS
分子名称: MU-CONOTOXIN GIIIA
著者Lancelin, J.-M, Kohda, D, Inagaki, F.
登録日1992-12-12
公開日1994-01-31
最終更新日2017-11-29
実験手法SOLUTION NMR
主引用文献Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations.
Biochemistry, 31, 1992
8K4Z
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BU of 8k4z by Molmil
Crystal structure of human MMP-7 in complex with inhibitor
分子名称: CALCIUM ION, CHLORIDE ION, IODIDE ION, ...
著者Kamitani, M, Mima, M, Oka, Y.
登録日2023-07-20
公開日2024-04-17
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Discovery of TP0628103: A Selective MMP-7 Inhibitor Based on the Mitigation of OATP Substrate Recognition through Isoelectric Point Shift Strategy
To Be Published
8A51
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BU of 8a51 by Molmil
Crystal structure of HSF2BP-BRME1 complex
分子名称: 1,2-ETHANEDIOL, Break repair meiotic recombinase recruitment factor 1, CHLORIDE ION, ...
著者Miron, S, Legrand, P, Ropars, V, Ghouil, R, Zinn-Justin, S.
登録日2022-06-13
公開日2023-07-05
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献BRCA2-HSF2BP oligomeric ring disassembly by BRME1 promotes homologous recombination.
Sci Adv, 9, 2023
8A50
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Crystal structure of HSF2BP-ALPHA1 tetramer
分子名称: Heat shock factor 2-binding protein, PHOSPHATE ION
著者Miron, S, Legrand, P, Ropars, V, Ghouil, R, Zinn-Justin, S.
登録日2022-06-13
公開日2023-07-05
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.484 Å)
主引用文献BRCA2-HSF2BP oligomeric ring disassembly by BRME1 promotes homologous recombination.
Sci Adv, 9, 2023
7VQ0
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Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A.
登録日2021-10-18
公開日2022-07-20
実験手法ELECTRON MICROSCOPY (3.03 Å)
主引用文献A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron.
Commun Biol, 5, 2022
7VPY
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Crystal structure of the neutralizing nanobody P86 against SARS-CoV-2
分子名称: 1,2-ETHANEDIOL, Nanobody, SULFATE ION
著者Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A.
登録日2021-10-18
公開日2022-07-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron.
Commun Biol, 5, 2022
1HSR
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BU of 1hsr by Molmil
BINDING MODE OF BENZHYDROXAMIC ACID TO ARTHROMYCES RAMOSUS PEROXIDASE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BENZHYDROXAMIC ACID, CALCIUM ION, ...
著者Fukuyama, K, Itakura, H.
登録日1997-07-01
公開日1998-07-01
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Binding mode of benzhydroxamic acid to Arthromyces ramosus peroxidase shown by X-ray crystallographic analysis of the complex at 1.6 A resolution.
FEBS Lett., 412, 1997
7XWA
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Crystal structure of the receptor binding domain of SARS-CoV-2 Omicron BA.4/5 variant spike protein in complex with its receptor ACE2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
著者Suzuki, T, Kimura, K, Hashiguchi, T.
登録日2022-05-26
公開日2022-09-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.36 Å)
主引用文献Virological characteristics of the SARS-CoV-2 Omicron BA.2 subvariants, including BA.4 and BA.5.
Cell, 185, 2022
5B5P
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BU of 5b5p by Molmil
Crystal structure of the catalytic domain of MMP-13 complexed with 4-oxo-N-(3-(2-(1H-1,2,4-triazol-3-ylsulfanyl)ethoxy)benzyl)-3,4-dihydroquinazoline-2-carboxamide
分子名称: 4-oxo-N-{3-[2-(1H-1,2,4-triazol-3-ylsulfanyl)ethoxy]benzyl}-3,4-dihydroquinazoline-2-carboxamide, CALCIUM ION, Collagenase 3, ...
著者Oki, H, Tanaka, Y.
登録日2016-05-13
公開日2017-01-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Discovery of Novel, Highly Potent, and Selective Matrix Metalloproteinase (MMP)-13 Inhibitors with a 1,2,4-Triazol-3-yl Moiety as a Zinc Binding Group Using a Structure-Based Design Approach
J. Med. Chem., 60, 2017
1GVD
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BU of 1gvd by Molmil
CRYSTAL STRUCTURE OF C-MYB R2 V103L MUTANT
分子名称: AMMONIUM ION, MYB PROTO-ONCOGENE PROTEIN, SULFATE ION
著者Tahirov, T.H, Ogata, K.
登録日2002-02-08
公開日2003-07-03
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published
1GV5
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BU of 1gv5 by Molmil
CRYSTAL STRUCTURE OF C-MYB R2
分子名称: MYB PROTO-ONCOGENE PROTEIN, SODIUM ION
著者Tahirov, T.H, Ogata, K.
登録日2002-02-06
公開日2003-07-03
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published
5GXQ
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The crystal structure of the nucleosome containing H3.6
分子名称: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Taguchi, H, Xie, Y, Horikoshi, N, Kurumizaka, H.
登録日2016-09-19
公開日2017-04-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8
Biochemistry, 56, 2017
1GUU
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CRYSTAL STRUCTURE OF C-MYB R1
分子名称: MYB PROTO-ONCOGENE PROTEIN, SODIUM ION
著者Tahirov, T.H, Ogata, K.
登録日2002-01-30
公開日2003-06-26
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published
1GV2
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BU of 1gv2 by Molmil
CRYSTAL STRUCTURE OF C-MYB R2R3
分子名称: MYB PROTO-ONCOGENE PROTEIN, SODIUM ION
著者Tahirov, T.H, Ogata, K.
登録日2002-02-05
公開日2003-07-03
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published

221051

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